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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    119001 6c7i:A (1.713) BS02 ZN 3.1.4.17 GO:0004114 ... O00408 30070482
    119002 6c7i:B (1.713) BS02 ZN 3.1.4.17 GO:0004114 ... O00408 30070482
    119003 6c7i:C (1.713) BS02 ZN 3.1.4.17 GO:0004114 ... O00408 30070482
    119004 6c7i:D (1.713) BS02 ZN 3.1.4.17 GO:0004114 ... O00408 30070482
    119005 6c7j:A (1.85) BS02 ZN 3.1.4.17 GO:0004114 ... O00408 30070482
    119006 6c7j:B (1.85) BS02 ZN 3.1.4.17 GO:0004114 ... O00408 30070482
    119007 6c7j:C (1.85) BS02 ZN 3.1.4.17 GO:0004114 ... O00408 30070482
    119008 6c7j:D (1.85) BS02 ZN 3.1.4.17 GO:0004114 ... O00408 30070482
    119009 6c7k:A (2.5) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 29659842
    119010 6c7k:B (2.5) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 29659842
    119011 6c7k:C (2.5) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 29659842
    119012 6c7k:D (2.5) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 29659842
    119013 6c7o:A (3.15) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 29659842
    119014 6c7o:B (3.15) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 29659842
    119015 6c7p:A (2.6) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 29659842
    119016 6c7p:B (2.6) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 29659842
    119017 6c7w:A (1.28) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29685656
    119018 6c7x:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29685656
    119019 6c7y:A (2.499) BS02 MG 2.7.10.2 GO:0004672 ... P23458 29674694
    119020 6c89:A (1.75006) BS01 ZN 3.5.2.6 N/A E5KIY2 30375382
    119021 6c89:A (1.75006) BS02 ZN 3.5.2.6 N/A E5KIY2 30375382
    119022 6c89:B (1.75006) BS01 ZN 3.5.2.6 N/A E5KIY2 30375382
    119023 6c89:B (1.75006) BS02 ZN 3.5.2.6 N/A E5KIY2 30375382
    119024 6c89:C (1.75006) BS01 ZN 3.5.2.6 N/A E5KIY2 30375382
    119025 6c89:C (1.75006) BS02 ZN 3.5.2.6 N/A E5KIY2 30375382
    119026 6c89:D (1.75006) BS01 ZN 3.5.2.6 N/A E5KIY2 30375382
    119027 6c89:D (1.75006) BS02 ZN 3.5.2.6 N/A E5KIY2 30375382
    119028 6c8p:A (1.635) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 30137983
    119029 6c90:A (2.2) BS02 MG 3.6.4.13 GO:0003676 ... P42285 29844170
    119030 6c9c:A (2.0) BS03 ZN 3.5.1.108 GO:0006796 ... Q02H34 N/A
    119031 6c9y:D (4.25) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 29581236
    119032 6c9y:D (4.25) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29581236
    119033 6c9y:D (4.25) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29581236
    119034 6ca0:D (5.75) BS02 MG 2.7.7.6 GO:0000287 ... P0A8T7 29581236
    119035 6ca0:D (5.75) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29581236
    119036 6ca2:A (2.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 1932029
    119037 6ca4:A (1.623) BS01 MG 3.1.4.- GO:0003824 ... Q5XJA0 29574079
    119038 6ca4:B (1.623) BS01 MG 3.1.4.- GO:0003824 ... Q5XJA0 29574079
    119039 6ca4:C (1.623) BS01 MG 3.1.4.- GO:0003824 ... Q5XJA0 29574079
    119040 6cac:A (1.79) BS01 ZN 3.5.2.6 N/A C7C422 30348667
    119041 6cac:A (1.79) BS02 CO 3.5.2.6 N/A C7C422 30348667
    119042 6cac:A (1.79) BS03 CA 3.5.2.6 N/A C7C422 30348667
    119043 6cac:B (1.79) BS01 ZN 3.5.2.6 N/A C7C422 30348667
    119044 6cac:B (1.79) BS02 CO 3.5.2.6 N/A C7C422 30348667
    119045 6cac:B (1.79) BS03 CA 3.5.2.6 N/A C7C422 30348667
    119046 6cac:C (1.79) BS01 ZN 3.5.2.6 N/A C7C422 30348667
    119047 6cac:C (1.79) BS02 CO 3.5.2.6 N/A C7C422 30348667
    119048 6cac:C (1.79) BS03 CA 3.5.2.6 N/A C7C422 30348667
    119049 6cac:D (1.79) BS01 ZN 3.5.2.6 N/A C7C422 30348667
    119050 6cac:D (1.79) BS02 CO 3.5.2.6 N/A C7C422 30348667
    119051 6cac:D (1.79) BS03 CA 3.5.2.6 N/A C7C422 30348667
    119052 6cae:10 (2.6) BS03 MG ? GO:0003735 ... P60493 29625040
    119053 6cae:10 (2.6) BS04 MG ? GO:0003735 ... P60493 29625040
    119054 6cae:11 (2.6) BS03 MG ? GO:0003735 ... P60494 29625040
    119055 6cae:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 29625040
    119056 6cae:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 29625040
    119057 6cae:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 29625040
    119058 6cae:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 29625040
    119059 6cae:15 (2.6) BS02 MG ? GO:0003735 ... P80339 29625040
    119060 6cae:15 (2.6) BS03 MG ? GO:0003735 ... P80339 29625040
    119061 6cae:15 (2.6) BS04 MG ? GO:0003735 ... P80339 29625040
    119062 6cae:15 (2.6) BS05 ZN ? GO:0003735 ... P80339 29625040
    119063 6cae:16 (2.6) BS02 MG ? GO:0000049 ... P35871 29625040
    119064 6cae:16 (2.6) BS03 ZN ? GO:0000049 ... P35871 29625040
    119065 6cae:16 (2.6) BS04 MG ? GO:0000049 ... P35871 29625040
    119066 6cae:17 (2.6) BS02 MG ? GO:0003735 ... P80340 29625040
    119067 6cae:17 (2.6) BS03 MG ? GO:0003735 ... P80340 29625040
    119068 6cae:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 29625040
    119069 6cae:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 29625040
    119070 6cae:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 29625040
    119071 6cae:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 29625040
    119072 6cae:1D (2.6) BS03 MG ? GO:0002181 ... P60405 29625040
    119073 6cae:1D (2.6) BS04 MG ? GO:0002181 ... P60405 29625040
    119074 6cae:1D (2.6) BS05 MG ? GO:0002181 ... P60405 29625040
    119075 6cae:1D (2.6) BS06 MG ? GO:0002181 ... P60405 29625040
    119076 6cae:1D (2.6) BS07 MG ? GO:0002181 ... P60405 29625040
    119077 6cae:1D (2.6) BS08 MG ? GO:0002181 ... P60405 29625040
    119078 6cae:1D (2.6) BS09 MG ? GO:0002181 ... P60405 29625040
    119079 6cae:1D (2.6) BS10 MG ? GO:0002181 ... P60405 29625040
    119080 6cae:1D (2.6) BS11 MG ? GO:0002181 ... P60405 29625040
    119081 6cae:1D (2.6) BS12 MG ? GO:0002181 ... P60405 29625040
    119082 6cae:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 29625040
    119083 6cae:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 29625040
    119084 6cae:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 29625040
    119085 6cae:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 29625040
    119086 6cae:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 29625040
    119087 6cae:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 29625040
    119088 6cae:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 29625040
    119089 6cae:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 29625040
    119090 6cae:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 29625040
    119091 6cae:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 29625040
    119092 6cae:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 29625040
    119093 6cae:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 29625040
    119094 6cae:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 29625040
    119095 6cae:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 29625040
    119096 6cae:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 29625040
    119097 6cae:1G (2.6) BS06 MG ? GO:0000049 ... Q5SHQ0 29625040
    119098 6cae:1N (2.6) BS02 MG ? GO:0003729 ... P60488 29625040
    119099 6cae:1N (2.6) BS03 MG ? GO:0003729 ... P60488 29625040
    119100 6cae:1N (2.6) BS04 MG ? GO:0003729 ... P60488 29625040
    119101 6cae:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 29625040
    119102 6cae:1O (2.6) BS05 MG ? GO:0003735 ... Q5SHP8 29625040
    119103 6cae:1O (2.6) BS06 MG ? GO:0003735 ... Q5SHP8 29625040
    119104 6cae:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 29625040
    119105 6cae:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 29625040
    119106 6cae:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 29625040
    119107 6cae:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 29625040
    119108 6cae:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 29625040
    119109 6cae:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 29625040
    119110 6cae:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 29625040
    119111 6cae:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 29625040
    119112 6cae:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 29625040
    119113 6cae:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 29625040
    119114 6cae:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 29625040
    119115 6cae:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 29625040
    119116 6cae:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 29625040
    119117 6cae:1T (2.6) BS03 MG ? GO:0003735 ... P60490 29625040
    119118 6cae:1U (2.6) BS02 MG ? GO:0000027 ... P60491 29625040
    119119 6cae:1U (2.6) BS03 MG ? GO:0000027 ... P60491 29625040
    119120 6cae:1U (2.6) BS04 MG ? GO:0000027 ... P60491 29625040
    119121 6cae:1U (2.6) BS05 MG ? GO:0000027 ... P60491 29625040
    119122 6cae:1U (2.6) BS06 MG ? GO:0000027 ... P60491 29625040
    119123 6cae:1U (2.6) BS07 MG ? GO:0000027 ... P60491 29625040
    119124 6cae:1U (2.6) BS08 MG ? GO:0000027 ... P60491 29625040
    119125 6cae:1U (2.6) BS09 MG ? GO:0000027 ... P60491 29625040
    119126 6cae:1V (2.6) BS02 MG ? GO:0003723 ... P60492 29625040
    119127 6cae:1V (2.6) BS03 MG ? GO:0003723 ... P60492 29625040
    119128 6cae:1V (2.6) BS04 MG ? GO:0003723 ... P60492 29625040
    119129 6cae:1V (2.6) BS05 MG ? GO:0003723 ... P60492 29625040
    119130 6cae:1V (2.6) BS06 MG ? GO:0003723 ... P60492 29625040
    119131 6cae:1V (2.6) BS07 MG ? GO:0003723 ... P60492 29625040
    119132 6cae:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 29625040
    119133 6cae:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 29625040
    119134 6cae:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 29625040
    119135 6cae:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 29625040
    119136 6cae:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 29625040
    119137 6cae:1X (2.6) BS05 MG ? GO:0000027 ... Q5SHP0 29625040
    119138 6cae:1X (2.6) BS06 MG ? GO:0000027 ... Q5SHP0 29625040
    119139 6cae:1Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 29625040
    119140 6cae:1Y (2.6) BS03 MG ? GO:0003723 ... Q5SHP9 29625040
    119141 6cae:1b (2.6) BS02 MG ? GO:0003735 ... P80371 29625040
    119142 6cae:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 29625040
    119143 6cae:1e (2.6) BS03 MG ? GO:0003723 ... Q5SHQ5 29625040
    119144 6cae:1k (2.6) BS02 MG ? GO:0003735 ... P80376 29625040
    119145 6cae:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 29625040
    119146 6cae:1m (2.6) BS04 MG ? GO:0000049 ... P80377 29625040
    119147 6cae:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 29625040
    119148 6cae:20 (2.6) BS03 MG ? GO:0003735 ... P60493 29625040
    119149 6cae:21 (2.6) BS03 MG ? GO:0003735 ... P60494 29625040
    119150 6cae:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 29625040
    119151 6cae:23 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 29625040
    119152 6cae:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 29625040
    119153 6cae:25 (2.6) BS02 MG ? GO:0003735 ... P80339 29625040
    119154 6cae:25 (2.6) BS03 ZN ? GO:0003735 ... P80339 29625040
    119155 6cae:25 (2.6) BS04 MG ? GO:0003735 ... P80339 29625040
    119156 6cae:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 29625040
    119157 6cae:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 29625040
    119158 6cae:2D (2.6) BS03 MG ? GO:0002181 ... P60405 29625040
    119159 6cae:2D (2.6) BS04 MG ? GO:0002181 ... P60405 29625040
    119160 6cae:2D (2.6) BS05 MG ? GO:0002181 ... P60405 29625040
    119161 6cae:2D (2.6) BS06 MG ? GO:0002181 ... P60405 29625040
    119162 6cae:2D (2.6) BS07 MG ? GO:0002181 ... P60405 29625040
    119163 6cae:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 29625040
    119164 6cae:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 29625040
    119165 6cae:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 29625040
    119166 6cae:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 29625040
    119167 6cae:2G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 29625040
    119168 6cae:2Q (2.6) BS03 MG ? GO:0000049 ... P60489 29625040
    119169 6cae:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 29625040
    119170 6cae:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 29625040
    119171 6cae:2T (2.6) BS03 MG ? GO:0003735 ... P60490 29625040
    119172 6cae:2U (2.6) BS02 MG ? GO:0000027 ... P60491 29625040
    119173 6cae:2U (2.6) BS03 MG ? GO:0000027 ... P60491 29625040
    119174 6cae:2U (2.6) BS04 MG ? GO:0000027 ... P60491 29625040
    119175 6cae:2V (2.6) BS02 MG ? GO:0003723 ... P60492 29625040
    119176 6cae:2V (2.6) BS03 MG ? GO:0003723 ... P60492 29625040
    119177 6cae:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 29625040
    119178 6cae:2W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 29625040
    119179 6cae:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 29625040
    119180 6cae:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 29625040
    119181 6cae:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 29625040
    119182 6cae:2d (2.6) BS03 MG ? GO:0003723 ... P80373 29625040
    119183 6cae:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 29625040
    119184 6cae:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 29625040
    119185 6cae:2k (2.6) BS02 MG ? GO:0003735 ... P80376 29625040
    119186 6cae:2l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 29625040
    119187 6cae:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 29625040
    119188 6cae:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 29625040
    119189 6cae:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 29625040
    119190 6cae:2q (2.6) BS03 MG ? GO:0003735 ... P0DOY7 29625040
    119191 6cae:2t (2.6) BS02 MG ? GO:0003723 ... P80380 29625040
    119192 6cam:A (1.75) BS01 CA ? N/A Q8DTF1 29685986
    119193 6cao:D (3.45) BS02 MG ? GO:0003723 ... P80373 30139800
    119194 6cao:M (3.45) BS02 MG ? GO:0000049 ... P80377 30139800
    119195 6cao:N (3.45) BS02 ZN ? GO:0003735 ... P0DOY6 30139800
    119196 6cao:Q (3.45) BS02 MG ? GO:0003735 ... P0DOY7 30139800
    119197 6cao:S (3.45) BS02 MG ? GO:0003723 ... Q5SHP2 30139800
    119198 6cao:T (3.45) BS02 MG ? GO:0003723 ... P80380 30139800
    119199 6cap:B (3.4) BS02 MG ? GO:0003735 ... P80371 N/A
    119200 6cap:C (3.4) BS02 MG ? GO:0003676 ... P80372 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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