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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    118201 6bjs:J (5.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29499135
    118202 6bjs:J (5.5) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29499135
    118203 6bk5:A (2.401) BS01 CA 2.3.2.27 GO:0001784 ... F2UL73 29498112
    118204 6bk8:B (3.3) BS03 MG ? GO:0000244 ... P36048 29146870
    118205 6bk8:F (3.3) BS02 ZN ? GO:0000398 ... P38241 29146870
    118206 6bk8:F (3.3) BS03 ZN ? GO:0000398 ... P38241 29146870
    118207 6bk8:G (3.3) BS03 ZN ? GO:0000387 ... Q12046 29146870
    118208 6bk8:I (3.3) BS03 ZN ? GO:0000282 ... P25337 29146870
    118209 6bk8:I (3.3) BS04 ZN ? GO:0000282 ... P25337 29146870
    118210 6bk8:I (3.3) BS05 ZN ? GO:0000282 ... P25337 29146870
    118211 6bk8:O (3.3) BS02 ZN ? GO:0000350 ... Q02775 29146870
    118212 6bkj:A (3.2) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118213 6bkj:A (3.2) BS03 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118214 6bkj:B (3.2) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118215 6bkj:B (3.2) BS03 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118216 6bkj:C (3.2) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118217 6bkj:C (3.2) BS03 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118218 6bkj:D (3.2) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118219 6bkj:D (3.2) BS03 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118220 6bkx:A (1.65) BS01 CA 1.1.1.42 GO:0000287 ... O75874 30004704
    118221 6bkx:B (1.65) BS02 CA 1.1.1.42 GO:0000287 ... O75874 30004704
    118222 6bkx:C (1.65) BS01 CA 1.1.1.42 GO:0000287 ... O75874 30004704
    118223 6bky:C (2.17) BS02 MG 1.1.1.42 GO:0000287 ... O75874 30004704
    118224 6bky:D (2.17) BS01 MG 1.1.1.42 GO:0000287 ... O75874 30004704
    118225 6bky:E (2.17) BS01 MG 1.1.1.42 GO:0000287 ... O75874 30004704
    118226 6bl1:A (2.02) BS01 CA 1.1.1.42 GO:0000287 ... O75874 30004704
    118227 6bl1:B (2.02) BS02 CA 1.1.1.42 GO:0000287 ... O75874 30004704
    118228 6bl1:C (2.02) BS01 CA 1.1.1.42 GO:0000287 ... O75874 30004704
    118229 6bl2:B (1.92) BS01 CA 1.1.1.42 GO:0000287 ... O75874 30004704
    118230 6bl2:C (1.92) BS01 CA 1.1.1.42 GO:0000287 ... O75874 30004704
    118231 6blf:A (2.11) BS02 ZN 3.1.4.17 GO:0004114 ... O00408 N/A
    118232 6blf:B (2.11) BS02 ZN 3.1.4.17 GO:0004114 ... O00408 N/A
    118233 6blo:A (3.401) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29487211
    118234 6blo:A (3.401) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 29487211
    118235 6blo:A (3.401) BS05 MG 2.7.7.6 GO:0000428 ... P04050 29487211
    118236 6blo:B (3.401) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 29487211
    118237 6blo:C (3.401) BS01 ZN ? GO:0000428 ... P16370 29487211
    118238 6blo:I (3.401) BS01 ZN ? GO:0000428 ... P27999 29487211
    118239 6blo:I (3.401) BS02 ZN ? GO:0000428 ... P27999 29487211
    118240 6blo:J (3.401) BS01 ZN ? GO:0000428 ... P22139 29487211
    118241 6blo:L (3.401) BS01 ZN ? GO:0000428 ... P40422 29487211
    118242 6blp:A (3.203) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29487211
    118243 6blp:A (3.203) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 29487211
    118244 6blp:A (3.203) BS05 MG 2.7.7.6 GO:0000428 ... P04050 29487211
    118245 6blp:B (3.203) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 29487211
    118246 6blp:C (3.203) BS01 ZN ? GO:0000428 ... P16370 29487211
    118247 6blp:I (3.203) BS01 ZN ? GO:0000428 ... P27999 29487211
    118248 6blp:I (3.203) BS02 ZN ? GO:0000428 ... P27999 29487211
    118249 6blp:J (3.203) BS01 ZN ? GO:0000428 ... P22139 29487211
    118250 6blp:L (3.203) BS01 ZN ? GO:0000428 ... P40422 29487211
    118251 6blw:A (1.835) BS03 ZN ? N/A P19544 29294058
    118252 6blw:A (1.835) BS04 ZN ? N/A P19544 29294058
    118253 6blw:A (1.835) BS05 ZN ? N/A P19544 29294058
    118254 6blw:A (1.835) BS06 ZN ? N/A P19544 29294058
    118255 6bm2:A (3.403) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29487211
    118256 6bm2:A (3.403) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 29487211
    118257 6bm2:A (3.403) BS05 MG 2.7.7.6 GO:0000428 ... P04050 29487211
    118258 6bm2:B (3.403) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 29487211
    118259 6bm2:C (3.403) BS01 ZN ? GO:0000428 ... P16370 29487211
    118260 6bm2:I (3.403) BS01 ZN ? GO:0000428 ... P27999 29487211
    118261 6bm2:I (3.403) BS02 ZN ? GO:0000428 ... P27999 29487211
    118262 6bm2:J (3.403) BS01 ZN ? GO:0000428 ... P22139 29487211
    118263 6bm2:L (3.403) BS01 ZN ? GO:0000428 ... P40422 29487211
    118264 6bm4:A (2.951) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29487211
    118265 6bm4:A (2.951) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 29487211
    118266 6bm4:A (2.951) BS05 MG 2.7.7.6 GO:0000428 ... P04050 29487211
    118267 6bm4:C (2.951) BS01 ZN ? GO:0000428 ... P16370 29487211
    118268 6bm4:I (2.951) BS01 ZN ? GO:0000428 ... P27999 29487211
    118269 6bm4:I (2.951) BS02 ZN ? GO:0000428 ... P27999 29487211
    118270 6bm4:J (2.951) BS01 ZN ? GO:0000428 ... P22139 29487211
    118271 6bm4:L (2.951) BS01 ZN ? GO:0000428 ... P40422 29487211
    118272 6bm9:A (2.19) BS01 ZN 3.5.2.6 GO:0016787 ... Q5U7L7 30719972
    118273 6bm9:A (2.19) BS02 ZN 3.5.2.6 GO:0016787 ... Q5U7L7 30719972
    118274 6bm9:B (2.19) BS01 ZN 3.5.2.6 GO:0016787 ... Q5U7L7 30719972
    118275 6bm9:C (2.19) BS01 ZN 3.5.2.6 GO:0016787 ... Q5U7L7 30719972
    118276 6bm9:C (2.19) BS02 ZN 3.5.2.6 GO:0016787 ... Q5U7L7 30719972
    118277 6bm9:D (2.19) BS01 ZN 3.5.2.6 GO:0016787 ... Q5U7L7 30719972
    118278 6bmc:A (2.7) BS02 CO 2.5.1.54 GO:0003849 ... G3XCJ9 30242059
    118279 6bmc:B (2.7) BS01 CO 2.5.1.54 GO:0003849 ... G3XCJ9 30242059
    118280 6bml:A (2.95) BS01 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118281 6bml:A (2.95) BS02 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118282 6bml:B (2.95) BS01 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118283 6bml:B (2.95) BS02 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118284 6bmm:A (2.35) BS01 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118285 6bmm:A (2.35) BS02 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118286 6bmm:B (2.35) BS01 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118287 6bmm:B (2.35) BS02 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118288 6bmn:A (2.25) BS01 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118289 6bmn:A (2.25) BS02 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118290 6bmn:B (2.25) BS01 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118291 6bmn:B (2.25) BS02 ZN 2.3.1.-
    2.3.1.225
    GO:0016409 ... Q5W0Z9 29326245
    118292 6bms:A (2.441) BS01 ZN 2.3.1.-
    2.3.1.225
    GO:0000139 ... F1QXD3 29326245
    118293 6bms:A (2.441) BS02 ZN 2.3.1.-
    2.3.1.225
    GO:0000139 ... F1QXD3 29326245
    118294 6bms:D (2.441) BS01 ZN 2.3.1.-
    2.3.1.225
    GO:0000139 ... F1QXD3 29326245
    118295 6bms:D (2.441) BS02 ZN 2.3.1.-
    2.3.1.225
    GO:0000139 ... F1QXD3 29326245
    118296 6bmt:A (2.403) BS01 CA 1.11.2.2 GO:0004601 ... P05164 29524428
    118297 6bn2:A (1.65) BS01 CA 2.3.1.9 GO:0003985 ... A0A077EEP0 N/A
    118298 6bn7:B (3.501) BS01 ZN ? GO:0005515 ... Q96SW2 29892083
    118299 6bn8:B (3.99004) BS01 ZN ? N/A Q96SW2 29892083
    118300 6bn9:B (4.382) BS01 ZN ? GO:0005515 ... Q96SW2 29892083
    118301 6bnb:B (6.343) BS01 ZN ? GO:0005515 ... Q96SW2 29892083
    118302 6bnc:A (1.5) BS01 ZN ? GO:0016772 ... A0A1E9VP98 29631403
    118303 6bnc:A (1.5) BS02 ZN ? GO:0016772 ... A0A1E9VP98 29631403
    118304 6bnc:B (1.5) BS01 ZN ? GO:0016772 ... A0A1E9VP98 29631403
    118305 6bnc:B (1.5) BS02 ZN ? GO:0016772 ... A0A1E9VP98 29631403
    118306 6bnd:A (1.66) BS01 ZN ? GO:0016772 ... A0A1E9VP98 29631403
    118307 6bnd:B (1.66) BS01 ZN ? GO:0016772 ... A0A1E9VP98 29631403
    118308 6bnf:A (2.33) BS01 ZN ? GO:0016772 ... A0A1E9VP98 29631403
    118309 6bnj:A (1.909) BS02 MG 2.4.2.8 GO:0000166 ... P00492 29161011
    118310 6bnj:B (1.909) BS02 MG 2.4.2.8 GO:0000166 ... P00492 29161011
    118311 6bnj:C (1.909) BS02 MG 2.4.2.8 GO:0000166 ... P00492 29161011
    118312 6bnj:D (1.909) BS02 MG 2.4.2.8 GO:0000166 ... P00492 29161011
    118313 6bnn:A (1.55) BS02 CO 4.4.1.5 GO:0004462 ... B6TPH0 30993890
    118314 6bno:A (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118315 6bno:B (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118316 6bno:E (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118317 6bno:F (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118318 6bno:G (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118319 6bno:H (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118320 6bnp:B (4.6) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118321 6bnp:C (4.6) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118322 6bnp:E (4.6) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118323 6bnp:F (4.6) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118324 6bnp:G (4.6) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118325 6bnp:H (4.6) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118326 6bnq:A (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118327 6bnq:B (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118328 6bnq:C (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118329 6bnq:D (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118330 6bnq:E (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118331 6bnq:F (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118332 6bnq:G (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118333 6bnq:H (5.5) BS01 MG 3.6.4.- GO:0000287 ... P68135 29199952
    118334 6bnx:A (1.8) BS01 CO 4.4.1.5 GO:0004462 ... B6TPH0 30993890
    118335 6bnz:A (1.45) BS01 CO 4.4.1.5 GO:0004462 ... B6TPH0 30993890
    118336 6bo7:A (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118337 6bo7:B (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118338 6bo7:C (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118339 6bo7:D (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118340 6bo7:E (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118341 6bo7:E (2.856) BS02 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118342 6bo7:F (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118343 6bo7:G (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118344 6bo7:H (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118345 6bo7:I (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118346 6bo7:J (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118347 6bo7:K (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118348 6bo7:K (2.856) BS02 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118349 6bo7:L (2.856) BS01 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118350 6bo7:L (2.856) BS02 MG 2.4.2.8 GO:0000166 ... A5K7E9 29161011
    118351 6boh:AB (3.4) BS02 MG ? GO:0003735 ... P62658 29731232
    118352 6boh:AC (3.4) BS02 ZN ? GO:0003723 ... Q72I15 29731232
    118353 6boh:CA (3.4) BS02 ZN ? GO:0003735 ... P62652 29731232
    118354 6boh:DD (3.4) BS03 MG ? GO:0003735 ... P62657 29731232
    118355 6boh:E (3.4) BS03 MG ? GO:0002181 ... Q72I07 29731232
    118356 6boh:E (3.4) BS04 MG ? GO:0002181 ... Q72I07 29731232
    118357 6boh:GC (3.4) BS02 MG ? GO:0003735 ... Q72JR0 29731232
    118358 6boh:HC (3.4) BS02 ZN ? GO:0003735 ... P62652 29731232
    118359 6boh:IC (3.4) BS02 ZN ? GO:0003735 ... Q72GW3 29731232
    118360 6boh:K (3.4) BS02 MG ? GO:0003729 ... Q72IN1 29731232
    118361 6boh:L (3.4) BS03 MG ? GO:0003735 ... Q72I14 29731232
    118362 6boh:L (3.4) BS04 MG ? GO:0003735 ... Q72I14 29731232
    118363 6boh:M (3.4) BS02 MG ? GO:0003735 ... Q72I23 29731232
    118364 6boh:PA (3.4) BS02 MG ? GO:0003735 ... P62666 29731232
    118365 6boh:RC (3.4) BS02 MG ? GO:0003676 ... P62663 29731232
    118366 6boh:SC (3.4) BS02 MG ? GO:0003723 ... P62664 29731232
    118367 6boh:V (3.4) BS02 ZN ? GO:0003723 ... Q72I15 29731232
    118368 6boh:VA (3.4) BS02 MG ? GO:0000049 ... P61941 29731232
    118369 6boj:A (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    118370 6boj:B (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    118371 6boj:C (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    118372 6boj:D (1.7) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343
    Q08499
    30131563
    118373 6bok:DA (3.55) BS02 ZN ? GO:0003735 ... Q72GW3 29731232
    118374 6bok:E (3.55) BS02 MG ? GO:0002181 ... Q72I07 29731232
    118375 6bok:EA (3.55) BS02 MG N/A GO:0003735 ... N/A 29731232
    118376 6bok:ED (3.55) BS02 MG ? GO:0003723 ... P62661 29731232
    118377 6bok:FC (3.55) BS02 MG ? GO:0003735 ... P62652 29731232
    118378 6bok:G (3.55) BS02 MG ? GO:0003735 ... Q72I05 29731232
    118379 6bok:GC (3.55) BS02 ZN ? GO:0003735 ... Q72GW3 29731232
    118380 6bok:HB (3.55) BS03 MG ? GO:0002181 ... Q72I07 29731232
    118381 6bok:HC (3.55) BS02 MG N/A GO:0003735 ... N/A 29731232
    118382 6bok:IB (3.55) BS02 MG ? GO:0003735 ... Q72I04 29731232
    118383 6bok:J (3.55) BS02 MG ? GO:0003735 ... Q72GV5 29731232
    118384 6bok:J (3.55) BS03 MG ? GO:0003735 ... Q72GV5 29731232
    118385 6bok:J (3.55) BS04 MG ? GO:0003735 ... Q72GV5 29731232
    118386 6bok:JA (3.55) BS02 MG ? GO:0003735 ... P62662 29731232
    118387 6bok:L (3.55) BS03 MG ? GO:0003735 ... Q72I14 29731232
    118388 6bok:LB (3.55) BS02 MG ? GO:0002181 ... Q72I19 29731232
    118389 6bok:M (3.55) BS03 MG ? GO:0003735 ... Q72I23 29731232
    118390 6bok:M (3.55) BS04 MG ? GO:0003735 ... Q72I23 29731232
    118391 6bok:MB (3.55) BS02 MG ? GO:0003735 ... Q72GV5 29731232
    118392 6bok:NA (3.55) BS02 MG ? GO:0003735 ... P62666 29731232
    118393 6bok:PB (3.55) BS02 MG ? GO:0003735 ... Q72I23 29731232
    118394 6bok:R (3.55) BS02 MG ? GO:0000027 ... Q72L76 29731232
    118395 6bok:W (3.55) BS03 MG ? GO:0003723 ... Q72IA7 29731232
    118396 6bok:W (3.55) BS04 MG ? GO:0003723 ... Q72IA7 29731232
    118397 6bok:WB (3.55) BS02 MG ? GO:0003735 ... Q72I09 29731232
    118398 6bok:Y (3.55) BS02 MG ? GO:0003735 ... Q72G84 29731232
    118399 6bok:YB (3.55) BS02 ZN ? GO:0003723 ... Q72I15 29731232
    118400 6box:A (2.412) BS01 ZN 2.1.1.355
    2.1.1.366
    2.1.1.367
    GO:0005634 ... O60016 30051891

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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