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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    118001 6bbl:B (1.68) BS02 FE 1.18.6.1 GO:0005524 ... P07329 29275221
    118002 6bbl:B (1.68) BS03 FE 1.18.6.1 GO:0005524 ... P07329 29275221
    118003 6bbl:D (1.68) BS01 FE 1.18.6.1 GO:0005524 ... P07329 29275221
    118004 6bbl:D (1.68) BS02 FE 1.18.6.1 GO:0005524 ... P07329 29275221
    118005 6bbn:E (3.514) BS02 MG ? GO:0003777 ... O00139 29980677
    118006 6bbo:A (3.428) BS03 ZN 3.5.4.38 GO:0000932 ... Q6NTF7 29290613
    118007 6bbo:E (3.428) BS03 ZN 3.5.4.38 GO:0000932 ... Q6NTF7 29290613
    118008 6bbp:A (35.0) BS02 MG ?
    3.6.5.2    		 GO:0001726 ... O08967
    P62330    		 29276036
    118009 6bbq:A (35.0) BS02 MG ?
    3.6.5.2    		 GO:0001726 ... O08967
    P62330    		 29276036
    118010 6bbs:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29429876
    118011 6bbt:B (1.9) BS01 CA ? N/A A2T8Y3 30936156
    118012 6bbt:B (1.9) BS02 CA ? N/A A2T8Y3 30936156
    118013 6bbw:A (1.8) BS01 CA ? GO:0046872 ... A0A096ZHB0 30936156
    118014 6bbw:B (1.8) BS01 CA ? GO:0046872 ... A0A096ZHB0 30936156
    118015 6bc0:F (2.198) BS01 MG 3.6.5.2 GO:0000902 ... P61586 29196061
    118016 6bc1:A (2.9) BS02 MG 3.6.5.2 GO:0001764 ... P63000 29196061
    118017 6bc1:B (2.9) BS02 MG 3.6.5.2 GO:0001764 ... P63000 29196061
    118018 6bc9:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29429876
    118019 6bca:C (1.995) BS01 MG 3.6.5.2 GO:0000902 ... P61586 29876405
    118020 6bca:F (1.995) BS01 MG 3.6.5.2 GO:0000902 ... P61586 29876405
    118021 6bcb:F (1.401) BS02 MG 3.6.5.2 GO:0000902 ... P61586 29876405
    118022 6bcc:A (1.8) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29429876
    118023 6bce:A (1.75) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118024 6bce:A (1.75) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118025 6bce:A (1.75) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    118026 6bcf:A (2.92) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118027 6bcf:A (2.92) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118028 6bcf:A (2.92) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    118029 6bcf:D (2.92) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118030 6bcf:D (2.92) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118031 6bcf:D (2.92) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    118032 6bcf:G (2.92) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118033 6bcf:G (2.92) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118034 6bcf:G (2.92) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    118035 6bcf:J (2.92) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118036 6bcf:J (2.92) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118037 6bcg:A (2.9) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118038 6bcg:D (2.9) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118039 6bcg:G (2.9) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118040 6bcg:J (2.9) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118041 6bci:A (2.28) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118042 6bci:A (2.28) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118043 6bci:A (2.28) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    118044 6bcn:A (2.5) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118045 6bcn:A (2.5) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118046 6bcn:A (2.5) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    118047 6bcn:C (2.5) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118048 6bcn:C (2.5) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118049 6bcn:C (2.5) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    118050 6bcn:G (2.5) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118051 6bcn:G (2.5) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118052 6bcn:J (2.5) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118053 6bcn:J (2.5) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118054 6bcn:J (2.5) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    118055 6bcr:A (1.986) BS02 MG ? GO:0005515 ... P27348 30696821
    118056 6bcr:B (1.986) BS02 MG ? GO:0005515 ... P27348 30696821
    118057 6bcr:E (1.986) BS02 MG ? GO:0005515 ... P27348 30696821
    118058 6bcr:F (1.986) BS02 MG ? GO:0005515 ... P27348 30696821
    118059 6bct:A (2.73) BS03 CA ? GO:0004519 ... C7SWF3 30357419
    118060 6bct:A (2.73) BS04 CA ? GO:0004519 ... C7SWF3 30357419
    118061 6bct:A (2.73) BS05 CA ? GO:0004519 ... C7SWF3 30357419
    118062 6bcu:R (3.8) BS02 MG 3.6.5.- GO:0000139 ... Q15382 29236692
    118063 6bcu:S (3.8) BS02 MG 3.6.5.- GO:0000139 ... Q15382 29236692
    118064 6bd0:A (1.45) BS03 CA ? GO:0004519 ... Q4VWW5 N/A
    118065 6bd0:A (1.45) BS04 CA ? GO:0004519 ... Q4VWW5 N/A
    118066 6bd1:A (2.35) BS02 MG ? GO:0005515 ... P27348 30696821
    118067 6bd1:B (2.35) BS02 MG ? GO:0005515 ... P27348 30696821
    118068 6bd1:F (2.35) BS02 MG ? GO:0005515 ... P27348 30696821
    118069 6bd3:A (2.28) BS01 MG 2.2.1.6 GO:0000287 ... P07342 N/A
    118070 6bd3:B (2.28) BS02 MG 2.2.1.6 GO:0000287 ... P07342 N/A
    118071 6bd4:A (2.4) BS01 ZN ? GO:0004888 ... P00268
    Q9ULV1    		 30135577
    118072 6bd9:A (1.982) BS01 MG 2.2.1.6 GO:0000287 ... P07342 N/A
    118073 6bd9:B (1.982) BS03 MG 2.2.1.6 GO:0000287 ... P07342 N/A
    118074 6bda:A (1.88) BS05 MG ? GO:0004519 ... Q4VWW5 N/A
    118075 6bda:A (1.88) BS06 MG ? GO:0004519 ... Q4VWW5 N/A
    118076 6bdj:A (2.15) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    118077 6bdj:U (2.15) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    118078 6bdn:A (1.5) BS01 MG 2.7.11.1 GO:0004672 ... Q9H2K8 N/A
    118079 6bdt:A (2.3) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118080 6bdt:A (2.3) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118081 6bdt:B (2.3) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118082 6bdt:B (2.3) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118083 6bdt:C (2.3) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118084 6bdt:C (2.3) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118085 6bdt:D (2.3) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118086 6bdt:D (2.3) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118087 6bdz:A (3.1) BS01 CA 3.4.24.81 GO:0004222 ... O14672 29224781
    118088 6bdz:A (3.1) BS02 ZN 3.4.24.81 GO:0004222 ... O14672 29224781
    118089 6be6:A (2.8) BS01 ZN 3.4.24.81 GO:0004222 ... O14672 29224781
    118090 6be6:A (2.8) BS02 CA 3.4.24.81 GO:0004222 ... O14672 29224781
    118091 6be6:B (2.8) BS02 ZN 3.4.24.81 GO:0004222 ... O14672 29224781
    118092 6be6:B (2.8) BS03 CA 3.4.24.81 GO:0004222 ... O14672 29224781
    118093 6be6:C (2.8) BS01 ZN 3.4.24.81 GO:0004222 ... O14672 29224781
    118094 6be6:C (2.8) BS02 CA 3.4.24.81 GO:0004222 ... O14672 29224781
    118095 6be6:D (2.8) BS01 ZN 3.4.24.81 GO:0004222 ... O14672 29224781
    118096 6be6:D (2.8) BS02 CA 3.4.24.81 GO:0004222 ... O14672 29224781
    118097 6bea:A (1.97) BS01 CA ? N/A A0A0H2V5A3 31036849
    118098 6bej:A (1.894) BS01 MN N/A GO:0004784 ... N/A 30615696
    118099 6bej:E (1.894) BS01 MN N/A GO:0004784 ... N/A 30615696
    118100 6bel:A (1.898) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29874056
    118101 6bem:A (1.88) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 29874056
    118102 6bff:A (1.7) BS01 MG ? GO:0016410 ... Q93ET8 29234669
    118103 6bff:B (1.7) BS01 MG ? GO:0016410 ... Q93ET8 29234669
    118104 6bfp:A (1.292) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30876891
    118105 6bfy:A (1.81) BS02 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118106 6bfy:B (1.81) BS02 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118107 6bfy:C (1.81) BS02 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118108 6bfy:D (1.81) BS02 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118109 6bfy:E (1.81) BS02 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118110 6bfy:F (1.81) BS02 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118111 6bfz:A (2.21) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118112 6bfz:B (2.21) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118113 6bfz:C (2.21) BS02 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118114 6bfz:D (2.21) BS02 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118115 6bfz:E (2.21) BS01 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118116 6bfz:F (2.21) BS02 MG 4.2.1.11 GO:0000015 ... P0A6P9 30714720
    118117 6bg2:A (1.83) BS02 MN 2.7.11.12 GO:0004672 ... Q13976 N/A
    118118 6bg2:B (1.83) BS02 MN 2.7.11.12 GO:0004672 ... Q13976 N/A
    118119 6bg2:C (1.83) BS02 MN 2.7.11.12 GO:0004672 ... Q13976 N/A
    118120 6bg2:D (1.83) BS02 MN 2.7.11.12 GO:0004672 ... Q13976 N/A
    118121 6bgc:A (2.082) BS02 CA ? GO:0005886 ... Q08255 29318719
    118122 6bgc:B (2.082) BS02 CA ? GO:0005886 ... Q08255 29318719
    118123 6bgd:A (1.47) BS01 CA ? GO:0005886 ... Q08255 29318719
    118124 6bgf:A (2.251) BS02 FE2 1.13.11.20 GO:0000097 ... Q16878 29942080
    118125 6bgi:A (3.8) BS01 CA ? GO:0005229 ... Q8BHY3 29236684
    118126 6bgi:A (3.8) BS02 CA ? GO:0005229 ... Q8BHY3 29236684
    118127 6bgi:B (3.8) BS01 CA ? GO:0005229 ... Q8BHY3 29236684
    118128 6bgi:B (3.8) BS02 CA ? GO:0005229 ... Q8BHY3 29236684
    118129 6bgj:A (3.8) BS01 CA ? GO:0005229 ... Q8BHY3 29236684
    118130 6bgj:B (3.8) BS01 CA ? GO:0005229 ... Q8BHY3 29236684
    118131 6bgm:A (2.206) BS01 FE2 1.13.11.20 GO:0000097 ... Q16878 29942080
    118132 6bgp:A (2.75) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118133 6bgp:A (2.75) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118134 6bgp:B (2.75) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118135 6bgp:B (2.75) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118136 6bgp:C (2.75) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118137 6bgp:C (2.75) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118138 6bgp:D (2.75) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118139 6bgp:D (2.75) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118140 6bgu:A (1.684) BS02 MN 1.14.11.67 N/A P29375 29537847
    118141 6bgv:A (1.592) BS02 MN 1.14.11.67 N/A P29375 29537847
    118142 6bgw:A (1.644) BS02 MN 1.14.11.67 N/A P29375 29537847
    118143 6bgx:A (1.882) BS02 MN 1.14.11.67 N/A P29375 29537847
    118144 6bgy:A (1.22) BS02 MN 1.14.11.67 N/A P29375 29537847
    118145 6bgz:A (1.688) BS02 MN 1.14.11.67 N/A P29375 29537847
    118146 6bh0:A (1.985) BS02 MN 1.14.11.67 N/A P29375 29537847
    118147 6bh1:A (1.932) BS02 MN 1.14.11.67 N/A P29375 29537847
    118148 6bh2:A (1.447) BS01 MN 1.14.11.67 N/A P29375 29537847
    118149 6bh3:A (1.701) BS02 MN 1.14.11.67 N/A P29375 29537847
    118150 6bh4:A (2.047) BS02 MN 1.14.11.67 N/A P29375 29537847
    118151 6bh5:A (1.651) BS02 MN 1.14.11.67 N/A P29375 29537847
    118152 6bh7:A (1.4) BS01 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118153 6bh7:A (1.4) BS02 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118154 6bh7:G (1.4) BS01 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118155 6bh7:G (1.4) BS02 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118156 6bh8:A (3.85) BS01 ZN 3.4.24.84 GO:0001889 ... O75844 30082509
    118157 6bh8:B (3.85) BS01 ZN 3.4.24.84 GO:0001889 ... O75844 30082509
    118158 6bhj:A (2.81) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 N/A
    118159 6bhj:C (2.81) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 N/A
    118160 6bhk:A (1.4) BS01 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118161 6bhk:A (1.4) BS02 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118162 6bhk:B (1.4) BS01 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118163 6bhk:B (1.4) BS02 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118164 6bhk:E (1.4) BS01 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118165 6bhk:E (1.4) BS02 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118166 6bhk:G (1.4) BS01 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118167 6bhk:G (1.4) BS02 ZN ? GO:0008270 ... A0A060GYS7 N/A
    118168 6bhl:A (1.4) BS01 ZN ? GO:0008270 ... A0A060GSX0 N/A
    118169 6bhl:A (1.4) BS02 ZN ? GO:0008270 ... A0A060GSX0 N/A
    118170 6bhl:G (1.4) BS01 ZN ? GO:0008270 ... A0A060GSX0 N/A
    118171 6bhl:G (1.4) BS02 ZN ? GO:0008270 ... A0A060GSX0 N/A
    118172 6bhu:A (3.14) BS03 MG 7.6.2.2
    7.6.2.3    		 GO:0005524 ... Q8HXQ5 29290467
    118173 6bhu:A (3.14) BS04 MG 7.6.2.2
    7.6.2.3    		 GO:0005524 ... Q8HXQ5 29290467
    118174 6bi8:A (2.291) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... K0BWD0 31765674
    118175 6bi8:B (2.291) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... K0BWD0 31765674
    118176 6bia:A (2.8) BS01 CA N/A N/A N/A 29681469
    118177 6bia:B (2.8) BS01 CA N/A N/A N/A 29681469
    118178 6bia:C (2.8) BS01 CA N/A N/A N/A 29681469
    118179 6bie:B (1.77) BS01 ZN ? GO:0042597 ... P77754 30297779
    118180 6big:A (2.21) BS01 CO 1.13.11.75 GO:0010436 ... P74334 29946976
    118181 6big:B (2.21) BS01 CO 1.13.11.75 GO:0010436 ... P74334 29946976
    118182 6big:C (2.21) BS01 CO 1.13.11.75 GO:0010436 ... P74334 29946976
    118183 6big:D (2.21) BS01 CO 1.13.11.75 GO:0010436 ... P74334 29946976
    118184 6bih:C (6.0) BS02 MG 3.6.4.- GO:0000287 ... P68135 29038012
    118185 6bj2:E (3.35) BS02 ZN ? GO:0046872 ... K7N5M4 30053426
    118186 6bjd:A (2.8) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118187 6bjd:A (2.8) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118188 6bjd:B (2.8) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118189 6bjd:B (2.8) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118190 6bjd:C (2.8) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118191 6bjd:C (2.8) BS03 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118192 6bjd:D (2.8) BS01 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118193 6bjd:D (2.8) BS02 CA 3.4.22.54 GO:0004198 ... P20807 29382717
    118194 6bjr:A (6.0) BS01 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    118195 6bjr:A (6.0) BS02 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    118196 6bjr:A (6.0) BS03 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    118197 6bjr:A (6.0) BS04 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    118198 6bjr:A (6.0) BS05 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    118199 6bjr:A (6.0) BS06 MG 3.4.21.5 GO:0001530 ... P00734 29440720
    118200 6bjs:J (5.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 29499135
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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