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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    117801 6b4v:MB (3.4) BS02 MG ? GO:0002181 ... Q72I19 29366636
    117802 6b4v:NB (3.4) BS02 MG ? GO:0003735 ... Q72GV5 29366636
    117803 6b4v:QC (3.4) BS02 MG ? GO:0003723 ... P62664 29366636
    117804 6b4v:RC (3.4) BS02 MG ? GO:0003723 ... P62665 29366636
    117805 6b4v:U (3.4) BS02 MG ? GO:0000027 ... Q72I06 29366636
    117806 6b4v:UB (3.4) BS03 MG ? GO:0003735 ... Q72JU9 29366636
    117807 6b4v:V (3.4) BS02 ZN ? GO:0003723 ... Q72I15 29366636
    117808 6b4v:VC (3.4) BS02 MG ? GO:0000049 ... P62669 29366636
    117809 6b4v:ZB (3.4) BS02 ZN ? GO:0003723 ... Q72I15 29366636
    117810 6b59:A (1.638) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29259754
    117811 6b5a:A (1.622) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29259754
    117812 6b5e:A (1.85) BS02 MG 2.7.7.24 GO:0000287 ... P9WH13 29076563
    117813 6b5e:B (1.85) BS02 MG 2.7.7.24 GO:0000287 ... P9WH13 29076563
    117814 6b5e:C (1.85) BS02 MG 2.7.7.24 GO:0000287 ... P9WH13 29076563
    117815 6b5e:D (1.85) BS02 MG 2.7.7.24 GO:0000287 ... P9WH13 29076563
    117816 6b5e:E (1.85) BS03 MG 2.7.7.24 GO:0000287 ... P9WH13 29076563
    117817 6b5e:F (1.85) BS03 MG 2.7.7.24 GO:0000287 ... P9WH13 29076563
    117818 6b5e:G (1.85) BS02 MG 2.7.7.24 GO:0000287 ... P9WH13 29076563
    117819 6b5e:H (1.85) BS02 MG 2.7.7.24 GO:0000287 ... P9WH13 29076563
    117820 6b5k:A (1.6) BS02 MG 2.7.7.24 GO:0000287 ... P9WH13 29076563
    117821 6b5k:B (1.6) BS01 MG 2.7.7.24 GO:0000287 ... P9WH13 29076563
    117822 6b5z:A (2.3) BS01 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117823 6b5z:B (2.3) BS01 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117824 6b60:A (2.7) BS02 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117825 6b60:A (2.7) BS03 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117826 6b60:B (2.7) BS03 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117827 6b60:B (2.7) BS04 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117828 6b61:A (2.7) BS01 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117829 6b61:B (2.7) BS02 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117830 6b62:A (2.003) BS03 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117831 6b62:A (2.003) BS04 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117832 6b62:B (2.003) BS05 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117833 6b62:B (2.003) BS06 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117834 6b63:A (2.696) BS02 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117835 6b63:A (2.696) BS03 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117836 6b63:A (2.696) BS04 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117837 6b63:B (2.696) BS05 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117838 6b63:B (2.696) BS06 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117839 6b63:B (2.696) BS07 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117840 6b64:A (2.6) BS02 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117841 6b64:A (2.6) BS03 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117842 6b64:A (2.6) BS04 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117843 6b64:B (2.6) BS05 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117844 6b64:B (2.6) BS06 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117845 6b64:B (2.6) BS07 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117846 6b65:A (2.702) BS01 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117847 6b65:A (2.702) BS02 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117848 6b65:B (2.702) BS01 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117849 6b66:A (2.5) BS03 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117850 6b66:A (2.5) BS04 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117851 6b66:B (2.5) BS03 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117852 6b66:B (2.5) BS04 MG 3.1.3.11
    3.1.3.25
    GO:0006020 ... O30298 N/A
    117853 6b67:A (2.2) BS02 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    117854 6b67:A (2.2) BS03 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    117855 6b67:A (2.2) BS04 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    117856 6b67:B (2.2) BS03 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    117857 6b67:B (2.2) BS04 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    117858 6b67:B (2.2) BS05 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    117859 6b67:B (2.2) BS06 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    117860 6b67:C (2.2) BS02 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    117861 6b67:C (2.2) BS03 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    117862 6b67:C (2.2) BS04 CA 3.1.3.16 GO:0004722 ... P35813 29602904
    117863 6b6h:D (3.9) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29146813
    117864 6b6h:D (3.9) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29146813
    117865 6b6h:D (3.9) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 29146813
    117866 6b6n:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    117867 6b6o:A (2.40008) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    117868 6b6p:A (2.00006) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    117869 6b6q:A (2.00007) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    117870 6b6r:A (2.00006) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    117871 6b6s:A (2.00023) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    117872 6b6t:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    117873 6b6u:A (1.35) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 29182273
    117874 6b6u:B (1.35) BS01 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 29182273
    117875 6b6z:A (2.112) BS01 ZN N/A N/A N/A N/A
    117876 6b6z:C (2.112) BS01 ZN N/A N/A N/A N/A
    117877 6b7h:A (2.82) BS02 CA ? GO:0004930 ... Q14832 29350927
    117878 6b7k:A (2.55) BS01 CA 3.2.1.99 GO:0004553 ... Q65GB9 29800670
    117879 6b7k:B (2.55) BS01 CA 3.2.1.99 GO:0004553 ... Q65GB9 29800670
    117880 6b7k:C (2.55) BS01 CA 3.2.1.99 GO:0004553 ... Q65GB9 29800670
    117881 6b7k:D (2.55) BS01 CA 3.2.1.99 GO:0004553 ... Q65GB9 29800670
    117882 6b86:A (2.2) BS01 CO 1.13.11.- GO:0010436 ... Q7S860 29946976
    117883 6b86:B (2.2) BS01 CO 1.13.11.- GO:0010436 ... Q7S860 29946976
    117884 6b86:C (2.2) BS01 CO 1.13.11.- GO:0010436 ... Q7S860 29946976
    117885 6b86:D (2.2) BS01 CO 1.13.11.- GO:0010436 ... Q7S860 29946976
    117886 6b89:A (2.0) BS02 MG 7.5.2.- GO:0005515 ... P0A9V1 29135241
    117887 6b89:B (2.0) BS03 MG 7.5.2.- GO:0005515 ... P0A9V1 29135241
    117888 6b8f:A (1.06) BS01 FE 1.16.3.1 GO:0004322 ... P02794 29720635
    117889 6b8f:A (1.06) BS02 FE 1.16.3.1 GO:0004322 ... P02794 29720635
    117890 6b8f:A (1.06) BS03 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    117891 6b8f:A (1.06) BS04 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    117892 6b8f:A (1.06) BS05 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    117893 6b8g:A (1.13) BS01 FE 1.16.3.1 GO:0004322 ... P02794 29720635
    117894 6b8g:A (1.13) BS02 FE 1.16.3.1 GO:0004322 ... P02794 29720635
    117895 6b8g:A (1.13) BS03 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    117896 6b8g:A (1.13) BS04 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    117897 6b8g:A (1.13) BS05 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    117898 6b8g:A (1.13) BS06 CA 1.16.3.1 GO:0004322 ... P02794 29720635
    117899 6b8h:F (3.6) BS02 MG 7.1.2.2 GO:0005515 ... P00830 29074581
    117900 6b8h:c (3.6) BS02 MG 7.1.2.2 GO:0005515 ... P00830 29074581
    117901 6b8m:B (2.3) BS01 CA ? GO:0000086 ... P0DP23 29429937
    117902 6b8m:D (2.3) BS01 CA ? GO:0000086 ... P0DP23 29429937
    117903 6b8m:F (2.3) BS01 CA ? GO:0000086 ... P0DP23 29429937
    117904 6b8m:F (2.3) BS02 CA ? GO:0000086 ... P0DP23 29429937
    117905 6b8m:H (2.3) BS01 CA ? GO:0000086 ... P0DP23 29429937
    117906 6b8m:H (2.3) BS02 CA ? GO:0000086 ... P0DP23 29429937
    117907 6b8n:B (2.201) BS01 CA ? GO:0000086 ... P0DP23 29429937
    117908 6b8n:D (2.201) BS01 CA ? GO:0000086 ... P0DP23 29429937
    117909 6b8n:F (2.201) BS01 CA ? GO:0000086 ... P0DP23 29429937
    117910 6b8n:H (2.201) BS01 CA ? GO:0000086 ... P0DP23 29429937
    117911 6b8p:B (2.2) BS01 MG ? GO:0000086 ... P0DP23 29429937
    117912 6b8p:D (2.2) BS01 MG ? GO:0000086 ... P0DP23 29429937
    117913 6b8p:F (2.2) BS01 MG ? GO:0000086 ... P0DP23 29429937
    117914 6b8p:H (2.2) BS01 MG ? GO:0000086 ... P0DP23 29429937
    117915 6b8q:B (2.6) BS01 MG ? GO:0000086 ... P0DP23 29429937
    117916 6b8q:B (2.6) BS02 MG ? GO:0000086 ... P0DP23 29429937
    117917 6b8q:B (2.6) BS03 MG ? GO:0000086 ... P0DP23 29429937
    117918 6b8q:D (2.6) BS01 MG ? GO:0000086 ... P0DP23 29429937
    117919 6b8q:D (2.6) BS02 MG ? GO:0000086 ... P0DP23 29429937
    117920 6b8q:D (2.6) BS03 MG ? GO:0000086 ... P0DP23 29429937
    117921 6b8q:D (2.6) BS04 MG ? GO:0000086 ... P0DP23 29429937
    117922 6b8q:F (2.6) BS01 MG ? GO:0000086 ... P0DP23 29429937
    117923 6b8q:F (2.6) BS02 MG ? GO:0000086 ... P0DP23 29429937
    117924 6b8q:F (2.6) BS03 MG ? GO:0000086 ... P0DP23 29429937
    117925 6b8q:F (2.6) BS04 MG ? GO:0000086 ... P0DP23 29429937
    117926 6b8q:H (2.6) BS01 MG ? GO:0000086 ... P0DP23 29429937
    117927 6b8q:H (2.6) BS02 MG ? GO:0000086 ... P0DP23 29429937
    117928 6b8q:H (2.6) BS03 MG ? GO:0000086 ... P0DP23 29429937
    117929 6b8q:H (2.6) BS04 MG ? GO:0000086 ... P0DP23 29429937
    117930 6b8q:H (2.6) BS05 MG ? GO:0000086 ... P0DP23 29429937
    117931 6b8r:A (1.65) BS01 CA 3.1.31.1 GO:0003676 ... P00644 29466010
    117932 6b8w:B (1.9) BS01 MN ? N/A A0A0H3CJW2 N/A
    117933 6b96:A (1.88) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29113762
    117934 6b96:B (1.88) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29113762
    117935 6b97:A (1.76) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29113762
    117936 6b97:B (1.76) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29113762
    117937 6b98:A (1.97) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29113762
    117938 6b98:B (1.97) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29113762
    117939 6b9d:A (1.95) BS02 MG 3.6.5.- GO:0003924 ... Q8WXF7 29180453
    117940 6b9d:B (1.95) BS02 MG 3.6.5.- GO:0003924 ... Q8WXF7 29180453
    117941 6b9e:A (1.99) BS02 MG 3.6.5.- GO:0003924 ... Q8WXF7 29180453
    117942 6b9e:B (1.99) BS02 MG 3.6.5.- GO:0003924 ... Q8WXF7 29180453
    117943 6b9f:A (1.9) BS01 MG 3.6.5.- GO:0003924 ... Q8WXF7 29180453
    117944 6b9f:B (1.9) BS01 MG 3.6.5.- GO:0003924 ... Q8WXF7 29180453
    117945 6b9o:A (1.841) BS07 ZN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    117946 6b9o:B (1.841) BS09 ZN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    117947 6b9p:A (1.996) BS08 ZN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    117948 6b9p:B (1.996) BS10 ZN 3.2.1.24 GO:0000326 ... C0HJB3 29722924
    117949 6b9r:A (1.802) BS01 FE N/A GO:0003677 ... N/A 29217579
    117950 6b9r:B (1.802) BS01 FE N/A GO:0003677 ... N/A 29217579
    117951 6b9r:C (1.802) BS02 FE N/A GO:0003677 ... N/A 29217579
    117952 6b9r:D (1.802) BS02 FE N/A GO:0003677 ... N/A 29217579
    117953 6b9s:A (2.373) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117954 6b9s:C (2.373) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117955 6b9s:D (2.373) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117956 6b9s:E (2.373) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117957 6b9s:G (2.373) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117958 6b9t:A (2.35) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117959 6b9t:B (2.35) BS02 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117960 6b9t:C (2.35) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117961 6b9t:D (2.35) BS02 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117962 6b9t:E (2.35) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117963 6b9t:F (2.35) BS02 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117964 6b9t:G (2.35) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117965 6b9t:H (2.35) BS01 FE 1.13.11.73 GO:0003677 ... A9A1T2 29217579
    117966 6b9v:A (1.88) BS01 MN ? GO:0046872 ... Q1INB9 29229761
    117967 6b9v:A (1.88) BS02 MN ? GO:0046872 ... Q1INB9 29229761
    117968 6b9v:A (1.88) BS04 ZN ? GO:0046872 ... Q1INB9 29229761
    117969 6b9v:B (1.88) BS01 MN ? GO:0046872 ... Q1INB9 29229761
    117970 6b9v:B (1.88) BS02 MN ? GO:0046872 ... Q1INB9 29229761
    117971 6b9v:B (1.88) BS04 ZN ? GO:0046872 ... Q1INB9 29229761
    117972 6ba0:A (2.03) BS01 CA N/A GO:0016799 ... N/A N/A
    117973 6ba0:B (2.03) BS01 CA N/A GO:0016799 ... N/A N/A
    117974 6ba0:C (2.03) BS01 CA N/A GO:0016799 ... N/A N/A
    117975 6ba0:D (2.03) BS01 CA N/A GO:0016799 ... N/A N/A
    117976 6ba1:A (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117977 6ba1:B (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117978 6ba1:C (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117979 6ba1:D (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117980 6ba1:E (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117981 6ba1:F (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117982 6ba1:G (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117983 6ba1:H (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117984 6ba1:I (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117985 6ba1:J (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117986 6ba1:K (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117987 6ba1:L (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117988 6ba1:M (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117989 6ba1:N (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117990 6ba1:O (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117991 6ba1:P (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117992 6ba1:Q (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117993 6ba1:R (2.9) BS01 CA N/A GO:0016799 ... N/A N/A
    117994 6ba2:A (1.85004) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q9H7Z6 30069049
    117995 6ba4:A (1.949) BS01 ZN 2.3.1.-
    2.3.1.48
    GO:0004402 ... Q9H7Z6 30069049
    117996 6ba7:A (2.496) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 30137983
    117997 6bbd:A (1.898) BS01 CA ? N/A Q9N1X4 29769321
    117998 6bbd:A (1.898) BS02 CA ? N/A Q9N1X4 29769321
    117999 6bbe:A (1.898) BS01 CA ? N/A Q9N1X4 29769321
    118000 6bbe:A (1.898) BS02 CA ? N/A Q9N1X4 29769321

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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