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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    117601 6auf:B (2.603) BS02 ZN ? GO:0008800 ... G6EHN2 N/A
    117602 6aum:A (2.95) BS01 MG 3.1.3.76
    3.3.2.10
    GO:0000287 ... P34913 29366648
    117603 6auq:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117604 6auq:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117605 6aur:A (1.75) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117606 6aur:B (1.75) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117607 6aus:A (1.7) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117608 6aus:B (1.7) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117609 6aut:A (1.9) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117610 6aut:B (1.9) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117611 6auu:A (1.85) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117612 6auu:B (1.85) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117613 6auv:A (1.76) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117614 6auv:B (1.76) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117615 6auw:A (1.7) BS04 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117616 6auw:B (1.7) BS02 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117617 6aux:A (1.9) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117618 6aux:B (1.9) BS05 ZN 1.14.13.39 GO:0004517 ... P29476 29091437
    117619 6auy:A (1.92) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117620 6auy:B (1.92) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117621 6auz:A (2.0) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117622 6auz:B (2.0) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117623 6av0:A (1.996) BS03 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117624 6av0:B (1.996) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117625 6av1:A (2.45) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117626 6av1:B (2.45) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117627 6av2:A (2.1) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117628 6av2:B (2.1) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117629 6av3:A (1.95) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117630 6av3:B (1.95) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117631 6av4:A (1.867) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117632 6av4:B (1.867) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117633 6av5:A (1.9) BS04 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117634 6av5:B (1.9) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 29091437
    117635 6av6:A (2.08) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 29091437
    117636 6av6:B (2.08) BS01 ZN 1.14.13.39 GO:0004517 ... P29474 29091437
    117637 6av6:C (2.08) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 29091437
    117638 6av6:D (2.08) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 29091437
    117639 6av7:A (1.916) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 29091437
    117640 6av7:B (1.916) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 29091437
    117641 6av7:C (1.916) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 29091437
    117642 6av7:D (1.916) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 29091437
    117643 6avl:A (2.0) BS01 CA 3.4.21.4 GO:0004175 ... P00760 30198901
    117644 6avm:A (2.502) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 30499174
    117645 6avm:A (2.502) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 30499174
    117646 6avm:C (2.502) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 30499174
    117647 6avm:C (2.502) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 30499174
    117648 6avs:A (2.02) BS01 ZN 1.14.11.73
    3.4.-.-
    N/A Q8N371 29459673
    117649 6avt:A (2.603) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 30499174
    117650 6avt:A (2.603) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 30499174
    117651 6avt:C (2.603) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 30499174
    117652 6avt:C (2.603) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 30499174
    117653 6aw7:A (2.15) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ0 N/A
    117654 6aw7:B (2.15) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ0 N/A
    117655 6aw8:A (2.25) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ0 N/A
    117656 6aw8:B (2.25) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ0 N/A
    117657 6aw8:C (2.25) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ0 N/A
    117658 6aw9:A (2.55) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ2 N/A
    117659 6aw9:B (2.55) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ2 N/A
    117660 6aw9:C (2.55) BS01 CA 2.1.1.6 GO:0000287 ... A0A452CSQ2 N/A
    117661 6ax3:A (2.25) BS03 ZN 1.14.11.73
    3.4.-.-
    N/A Q8N371 29459673
    117662 6ax6:A (2.241) BS01 FE2 1.14.11.4
    2.4.1.-
    GO:0005506 ... Q5UQC3 29410444
    117663 6ax6:B (2.241) BS01 FE2 1.14.11.4
    2.4.1.-
    GO:0005506 ... Q5UQC3 29410444
    117664 6ax7:A (2.002) BS01 FE2 1.14.11.4
    2.4.1.-
    GO:0005506 ... Q5UQC3 29410444
    117665 6ax7:B (2.002) BS01 FE2 1.14.11.4
    2.4.1.-
    GO:0005506 ... Q5UQC3 29410444
    117666 6ax9:A (2.403) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 28967743
    117667 6axb:A (1.8) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 30137983
    117668 6axe:A (1.6) BS02 MG 2.3.3.9 GO:0000287 ... B2HSY2 N/A
    117669 6axe:B (1.6) BS02 MG 2.3.3.9 GO:0000287 ... B2HSY2 N/A
    117670 6axm:A (1.8) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 28967743
    117671 6axn:A (1.9) BS01 MG 4.2.3.37 GO:0016829 ... Q9K499 28967743
    117672 6axu:A (1.822) BS03 MG 4.2.3.37 GO:0016829 ... Q9K499 28967743
    117673 6ay0:A (2.6) BS01 CU 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 30271955
    117674 6ayb:A (1.87) BS02 CA ? GO:0004497 ... A0A2H4A2U9 29284029
    117675 6ayu:A (2.2) BS02 MG 3.1.3.11 GO:0005737 ... P9WN21 29652259
    117676 6ayu:A (2.2) BS04 MG 3.1.3.11 GO:0005737 ... P9WN21 29652259
    117677 6ayu:B (2.2) BS02 MG 3.1.3.11 GO:0005737 ... P9WN21 29652259
    117678 6ayv:A (2.3) BS02 MG 3.1.3.11 GO:0005737 ... P9WN21 29652259
    117679 6ayv:A (2.3) BS03 MG 3.1.3.11 GO:0005737 ... P9WN21 29652259
    117680 6ayv:B (2.3) BS02 MG 3.1.3.11 GO:0005737 ... P9WN21 29652259
    117681 6az0:A (3.4) BS02 ZN ? GO:0004176 ... B3LL85 29097521
    117682 6az0:B (3.4) BS02 ZN ? GO:0004176 ... B3LL85 29097521
    117683 6az0:B (3.4) BS03 MG ? GO:0004176 ... B3LL85 29097521
    117684 6az0:C (3.4) BS03 ZN ? GO:0004176 ... B3LL85 29097521
    117685 6az0:D (3.4) BS03 ZN ? GO:0004176 ... B3LL85 29097521
    117686 6az0:E (3.4) BS02 ZN ? GO:0004176 ... B3LL85 29097521
    117687 6az0:F (3.4) BS01 ZN ? GO:0004176 ... B3LL85 29097521
    117688 6aze:A (2.451) BS02 ZN ? GO:0006357 ... Q12830 N/A
    117689 6aze:A (2.451) BS03 ZN ? GO:0006357 ... Q12830 N/A
    117690 6azp:A (2.291) BS01 CA 1.11.2.2 GO:0004601 ... P05164 29306874
    117691 6azq:G (2.22) BS02 CA 3.5.1.84 GO:0016787 ... Q1M7F4 29425231
    117692 6azr:B (3.628) BS01 MG ? GO:0000160 ... Q9WYT9 29235472
    117693 6azr:D (3.628) BS01 MG ? GO:0000160 ... Q9WYT9 29235472
    117694 6b00:A (0.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29139171
    117695 6b04:A (1.83) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117696 6b04:A (1.83) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117697 6b04:B (1.83) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117698 6b04:B (1.83) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117699 6b04:C (1.83) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117700 6b04:C (1.83) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117701 6b05:A (1.9) BS02 ZN ? GO:0046872 ... Q6D8U3 30071011
    117702 6b06:A (2.6) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117703 6b06:A (2.6) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117704 6b06:B (2.6) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117705 6b06:B (2.6) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117706 6b06:C (2.6) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117707 6b06:C (2.6) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117708 6b07:A (1.98) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117709 6b07:A (1.98) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117710 6b07:B (1.98) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117711 6b07:B (1.98) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117712 6b07:C (1.98) BS02 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117713 6b07:C (1.98) BS03 MG 2.5.1.- GO:0004659 ... Q1XAB1 29183817
    117714 6b09:A (3.2) BS02 MG 3.6.1.62
    3.6.1.64
    GO:0000166 ... Q96DE0 30976021
    117715 6b09:B (3.2) BS02 MG 3.6.1.62
    3.6.1.64
    GO:0000166 ... Q96DE0 30976021
    117716 6b0b:A (3.28006) BS03 ZN 3.5.4.38 GO:0000932 ... Q6NTF7 29290613
    117717 6b0b:E (3.28006) BS03 ZN 3.5.4.38 GO:0000932 ... Q6NTF7 29290613
    117718 6b0c:K (3.51) BS01 MG ? GO:0003777 ... Q960Z0 29695795
    117719 6b0j:A (2.5) BS05 CA N/A N/A N/A 29681469
    117720 6b0j:B (2.5) BS05 CA N/A N/A N/A 29681469
    117721 6b0j:C (2.5) BS04 CA N/A N/A N/A 29681469
    117722 6b0k:A (2.15) BS01 CA N/A N/A N/A 29681469
    117723 6b0k:B (2.15) BS01 CA N/A N/A N/A 29681469
    117724 6b0k:C (2.15) BS01 CA N/A N/A N/A 29681469
    117725 6b0o:A (1.552) BS03 ZN ? N/A P19544 29294058
    117726 6b0o:A (1.552) BS04 ZN ? N/A P19544 29294058
    117727 6b0o:A (1.552) BS05 ZN ? N/A P19544 29294058
    117728 6b0o:A (1.552) BS06 ZN ? N/A P19544 29294058
    117729 6b0o:D (1.552) BS03 ZN ? N/A P19544 29294058
    117730 6b0o:D (1.552) BS04 ZN ? N/A P19544 29294058
    117731 6b0o:D (1.552) BS05 ZN ? N/A P19544 29294058
    117732 6b0o:D (1.552) BS06 ZN ? N/A P19544 29294058
    117733 6b0p:A (2.077) BS03 ZN ? N/A P19544 29294058
    117734 6b0p:A (2.077) BS04 ZN ? N/A P19544 29294058
    117735 6b0p:A (2.077) BS05 ZN ? N/A P19544 29294058
    117736 6b0p:A (2.077) BS06 ZN ? N/A P19544 29294058
    117737 6b0p:D (2.077) BS03 ZN ? N/A P19544 29294058
    117738 6b0p:D (2.077) BS04 ZN ? N/A P19544 29294058
    117739 6b0p:D (2.077) BS05 ZN ? N/A P19544 29294058
    117740 6b0p:D (2.077) BS06 ZN ? N/A P19544 29294058
    117741 6b0q:A (2.794) BS03 ZN ? N/A P19544 29294058
    117742 6b0q:A (2.794) BS04 ZN ? N/A P19544 29294058
    117743 6b0q:A (2.794) BS05 ZN ? N/A P19544 29294058
    117744 6b0q:A (2.794) BS06 ZN ? N/A P19544 29294058
    117745 6b0q:D (2.794) BS03 ZN ? N/A P19544 29294058
    117746 6b0q:D (2.794) BS04 ZN ? N/A P19544 29294058
    117747 6b0q:D (2.794) BS05 ZN ? N/A P19544 29294058
    117748 6b0q:D (2.794) BS06 ZN ? N/A P19544 29294058
    117749 6b0r:A (1.818) BS03 ZN ? N/A P19544 29294058
    117750 6b0r:A (1.818) BS04 ZN ? N/A P19544 29294058
    117751 6b0r:A (1.818) BS05 ZN ? N/A P19544 29294058
    117752 6b0r:A (1.818) BS06 ZN ? N/A P19544 29294058
    117753 6b0r:D (1.818) BS03 ZN ? N/A P19544 29294058
    117754 6b0r:D (1.818) BS04 ZN ? N/A P19544 29294058
    117755 6b0r:D (1.818) BS05 ZN ? N/A P19544 29294058
    117756 6b0r:D (1.818) BS06 ZN ? N/A P19544 29294058
    117757 6b1v:A (2.84) BS05 CA N/A N/A N/A 29681469
    117758 6b1v:B (2.84) BS05 CA N/A N/A N/A 29681469
    117759 6b1v:C (2.84) BS04 CA N/A N/A N/A 29681469
    117760 6b2f:A (1.775) BS01 ZN ? GO:0008270 ... A0A060GYS1 N/A
    117761 6b2f:A (1.775) BS02 ZN ? GO:0008270 ... A0A060GYS1 N/A
    117762 6b2f:G (1.775) BS01 ZN ? GO:0008270 ... A0A060GYS1 N/A
    117763 6b2f:G (1.775) BS02 ZN ? GO:0008270 ... A0A060GYS1 N/A
    117764 6b2u:A (2.04) BS01 MN 2.3.3.20 GO:0004315 ... Q8PDX2 N/A
    117765 6b3a:A (1.784) BS02 MN ? N/A A0A1U7N2Z8 29096064
    117766 6b3b:A (1.85) BS02 MN ? N/A A0A1U7N2Z8 29096064
    117767 6b3k:H (2.09) BS02 MG N/A N/A N/A 29309709
    117768 6b3w:A (3.05) BS01 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117769 6b3w:A (3.05) BS02 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117770 6b3w:A (3.05) BS03 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117771 6b3w:A (3.05) BS04 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117772 6b3w:A (3.05) BS05 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117773 6b3w:A (3.05) BS06 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117774 6b3w:A (3.05) BS07 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117775 6b3w:B (3.05) BS01 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117776 6b3w:B (3.05) BS02 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117777 6b3w:B (3.05) BS03 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117778 6b3w:B (3.05) BS04 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117779 6b3w:B (3.05) BS05 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117780 6b3w:B (3.05) BS06 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117781 6b3w:B (3.05) BS07 ZN 2.1.1.356 GO:0006338 ... G1KPH4 29211475
    117782 6b40:A (4.3) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... A0A185KID9 30971819
    117783 6b40:A (4.3) BS07 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... A0A185KID9 30971819
    117784 6b40:E (4.3) BS06 CA 2.3.2.27
    3.1.-.-
    GO:0004519 ... A0A185KID9 30971819
    117785 6b40:E (4.3) BS07 ZN 2.3.2.27
    3.1.-.-
    GO:0004519 ... A0A185KID9 30971819
    117786 6b4d:A (1.196) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28947941
    117787 6b4j:E (3.4) BS01 MG 3.6.4.13 GO:0003676 ... Q9UMR2 29899397
    117788 6b4j:F (3.4) BS01 MG 3.6.4.13 GO:0003676 ... Q9UMR2 29899397
    117789 6b4v:BC (3.4) BS04 MG ? GO:0003735 ... Q72HR3 29366636
    117790 6b4v:CA (3.4) BS02 ZN ? GO:0003735 ... P62652 29366636
    117791 6b4v:G (3.4) BS02 MG ? GO:0003735 ... Q72I05 29366636
    117792 6b4v:GA (3.4) BS02 ZN ? GO:0003735 ... Q72I28 29366636
    117793 6b4v:GC (3.4) BS02 ZN ? GO:0003735 ... P62652 29366636
    117794 6b4v:I (3.4) BS02 MG ? GO:0002181 ... Q72I19 29366636
    117795 6b4v:JA (3.4) BS05 MG ? GO:0003747 ... P0A7I0 29366636
    117796 6b4v:K (3.4) BS02 MG ? GO:0003729 ... Q72IN1 29366636
    117797 6b4v:KB (3.4) BS02 MG ? GO:0003735 ... Q72I05 29366636
    117798 6b4v:KC (3.4) BS02 ZN ? GO:0003735 ... Q72I28 29366636
    117799 6b4v:MA (3.4) BS02 MG ? GO:0003723 ... P62664 29366636
    117800 6b4v:MA (3.4) BS03 MG ? GO:0003723 ... P62664 29366636

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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