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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    117001 6a5o:A (9.9) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117002 6a5o:A (9.9) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117003 6a5o:B (9.9) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    117004 6a5o:C (9.9) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    117005 6a5o:I (9.9) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    117006 6a5o:I (9.9) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    117007 6a5o:J (9.9) BS01 ZN ? GO:0000428 ... C4R009 30287617
    117008 6a5o:L (9.9) BS01 ZN ? GO:0001054 ... F2QMI1 30287617
    117009 6a5p:A (7.0) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117010 6a5p:A (7.0) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117011 6a5p:A (7.0) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117012 6a5p:B (7.0) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    117013 6a5p:C (7.0) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    117014 6a5p:I (7.0) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    117015 6a5p:I (7.0) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    117016 6a5p:J (7.0) BS01 ZN ? GO:0000428 ... C4R009 30287617
    117017 6a5p:L (7.0) BS01 ZN ? GO:0001054 ... F2QMI1 30287617
    117018 6a5r:A (8.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117019 6a5r:A (8.7) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117020 6a5r:A (8.7) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117021 6a5r:B (8.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    117022 6a5r:C (8.7) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    117023 6a5r:I (8.7) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    117024 6a5r:I (8.7) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    117025 6a5r:J (8.7) BS01 ZN ? GO:0000428 ... C4R009 30287617
    117026 6a5s:B (2.099) BS02 MG ? GO:0002842 ... P61981 30653408
    117027 6a5t:A (6.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117028 6a5t:A (6.7) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117029 6a5t:A (6.7) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117030 6a5t:B (6.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    117031 6a5t:C (6.7) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    117032 6a5t:I (6.7) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    117033 6a5t:I (6.7) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    117034 6a5t:J (6.7) BS01 ZN ? GO:0000428 ... C4R009 30287617
    117035 6a5u:A (7.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117036 6a5u:A (7.6) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117037 6a5u:A (7.6) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    117038 6a5u:B (7.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    117039 6a5u:C (7.6) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    117040 6a5u:I (7.6) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    117041 6a5u:I (7.6) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    117042 6a5u:J (7.6) BS01 ZN ? GO:0000428 ... C4R009 30287617
    117043 6a6a:A (2.26) BS02 ZN 3.4.17.- GO:0006508 ... Q47746 30016658
    117044 6a6a:B (2.26) BS02 ZN 3.4.17.- GO:0006508 ... Q47746 30016658
    117045 6a6f:A (2.1) BS01 ZN N/A GO:0005506 ... N/A 33320434
    117046 6a6f:B (2.1) BS01 ZN N/A GO:0005506 ... N/A 33320434
    117047 6a6g:C (2.49) BS01 ZN N/A GO:0005506 ... N/A 33320434
    117048 6a6g:C (2.49) BS02 ZN N/A GO:0005506 ... N/A 33320434
    117049 6a6g:D (2.49) BS01 ZN N/A GO:0005506 ... N/A 33320434
    117050 6a6j:A (2.255) BS02 ZN ? GO:0003676 ... P67809 31399345
    117051 6a6j:C (2.255) BS02 ZN ? GO:0003676 ... P67809 31399345
    117052 6a6m:A (1.9) BS02 MG ? GO:0005524 ... M1VAN7 30622258
    117053 6a6q:A (1.67) BS02 CA 1.11.1.14 GO:0000302 ... P06181 30555531
    117054 6a6q:A (1.67) BS03 CA 1.11.1.14 GO:0000302 ... P06181 30555531
    117055 6a7s:B (2.0) BS01 CA ? N/A A0A2Z6G7U3 30793424
    117056 6a7t:A (1.6) BS01 CA ? N/A A0A2Z6G7U6 30793424
    117057 6a7t:B (1.6) BS01 CA ? N/A A0A2Z6G7U3 30793424
    117058 6a7w:A (2.988) BS01 ZN ? GO:0016772 ... A0A1C3NEV1 30194678
    117059 6a7w:B (2.988) BS01 ZN ? GO:0016772 ... A0A1C3NEV1 30194678
    117060 6a83:A (2.602) BS01 ZN 2.7.-.- GO:0016772 ... P0CB39 30537137
    117061 6a84:A (1.98) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 30883102
    117062 6a8l:A (2.0) BS01 ZN N/A N/A N/A 30107912
    117063 6a8l:B (2.0) BS01 ZN N/A N/A N/A 30107912
    117064 6a8x:A (2.35) BS01 CA ? N/A A0A1L1VVY8 30222239
    117065 6a8x:A (2.35) BS02 CA ? N/A A0A1L1VVY8 30222239
    117066 6a8x:B (2.35) BS01 CA ? N/A A0A1L1VVY8 30222239
    117067 6a8x:B (2.35) BS02 CA ? N/A A0A1L1VVY8 30222239
    117068 6a8z:A (2.045) BS01 ZN 3.4.11.2 GO:0006508 ... Q9RVZ5 31351924
    117069 6a8z:B (2.045) BS01 ZN 3.4.11.2 GO:0006508 ... Q9RVZ5 31351924
    117070 6a92:A (1.58) BS01 CA ? N/A A0A1P8VSI6 30222239
    117071 6a92:A (1.58) BS02 CA ? N/A A0A1P8VSI6 30222239
    117072 6a92:B (1.58) BS01 CA ? N/A A0A1P8VSI6 30222239
    117073 6a92:B (1.58) BS02 CA ? N/A A0A1P8VSI6 30222239
    117074 6a92:C (1.58) BS01 CA ? N/A A0A1P8VSI6 30222239
    117075 6a92:C (1.58) BS02 CA ? N/A A0A1P8VSI6 30222239
    117076 6a92:D (1.58) BS01 CA ? N/A A0A1P8VSI6 30222239
    117077 6a92:D (1.58) BS02 CA ? N/A A0A1P8VSI6 30222239
    117078 6a93:A (3.0) BS03 ZN ? GO:0004930 ... P0ABE7
    P28223    		 30723326
    117079 6a94:A (2.9) BS03 ZN ? GO:0004930 ... P0ABE7
    P28223    		 30723326
    117080 6a95:A (2.6) BS02 NA ? GO:0001518 ... D0E0C2 30049784
    117081 6a98:A (1.82) BS01 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117082 6a98:A (1.82) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117083 6a98:B (1.82) BS01 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117084 6a98:B (1.82) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117085 6a98:C (1.82) BS01 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117086 6a98:C (1.82) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117087 6a98:D (1.82) BS01 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117088 6a98:D (1.82) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117089 6a99:A (2.29) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117090 6a99:A (2.29) BS04 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117091 6a99:A (2.29) BS05 MG ? GO:0046872 ... A0A1P8VSL7 30222239
    117092 6a99:B (2.29) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117093 6a99:B (2.29) BS04 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117094 6a99:B (2.29) BS05 MG ? GO:0046872 ... A0A1P8VSL7 30222239
    117095 6a99:C (2.29) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117096 6a99:C (2.29) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117097 6a99:D (2.29) BS01 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117098 6a99:D (2.29) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117099 6a99:D (2.29) BS03 MG ? GO:0046872 ... A0A1P8VSL7 30222239
    117100 6a9f:A (1.7) BS01 MG ? GO:0046872 ... A0A1P8VSL7 30222239
    117101 6a9f:A (1.7) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117102 6a9f:A (1.7) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117103 6a9f:B (1.7) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117104 6a9f:B (1.7) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117105 6a9f:C (1.7) BS01 MG ? GO:0046872 ... A0A1P8VSL7 30222239
    117106 6a9f:C (1.7) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117107 6a9f:C (1.7) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117108 6a9f:D (1.7) BS01 MG ? GO:0046872 ... A0A1P8VSL7 30222239
    117109 6a9f:D (1.7) BS02 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117110 6a9f:D (1.7) BS03 CA ? GO:0046872 ... A0A1P8VSL7 30222239
    117111 6a9o:A (2.5) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30286701
    117112 6a9o:B (2.5) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30286701
    117113 6a9o:C (2.5) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30286701
    117114 6a9o:D (2.5) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30286701
    117115 6a9o:E (2.5) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30286701
    117116 6a9o:F (2.5) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 30286701
    117117 6a9o:H (2.5) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30286701
    117118 6a9o:I (2.5) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30286701
    117119 6a9o:J (2.5) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 30286701
    117120 6a9t:A (2.15) BS01 MN 3.4.11.26 GO:0030145 ... P40051 30582634
    117121 6a9t:A (2.15) BS02 MN 3.4.11.26 GO:0030145 ... P40051 30582634
    117122 6a9u:A (2.4) BS02 MN 3.4.11.26 GO:0030145 ... P40051 30582634
    117123 6a9u:A (2.4) BS03 MN 3.4.11.26 GO:0030145 ... P40051 30582634
    117124 6a9v:A (2.9) BS01 MN 3.4.11.26 GO:0004177 ... P40051 30582634
    117125 6a9v:A (2.9) BS02 MN 3.4.11.26 GO:0004177 ... P40051 30582634
    117126 6aa3:A (2.001) BS01 ZN 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 30771603
    117127 6aa3:A (2.001) BS02 ZN 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 30771603
    117128 6aa3:A (2.001) BS03 ZN 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 30771603
    117129 6aa4:A (1.9) BS01 ZN 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 30771603
    117130 6aa4:A (1.9) BS02 ZN 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 30771603
    117131 6aa5:A (1.901) BS02 ZN 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 30771603
    117132 6aa5:A (1.901) BS03 ZN 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 30771603
    117133 6aa5:A (1.901) BS04 ZN 3.6.1.-
    3.6.1.56    		 GO:0001669 ... P36639 30771603
    117134 6aac:A (1.479) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117135 6aad:A (1.444) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117136 6aan:A (1.51) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117137 6aao:A (1.403) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117138 6aap:A (1.5) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117139 6aaq:A (1.551) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117140 6aaz:A (1.842) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117141 6ab0:A (1.441) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117142 6ab1:A (1.381) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117143 6ab2:A (1.4) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117144 6ab6:A (3.5) BS01 CA ? GO:0005198 ... A5H7Q8 30820467
    117145 6ab6:A (3.5) BS02 CA ? GO:0005198 ... A5H7Q8 30820467
    117146 6ab6:A (3.5) BS03 CA ? GO:0005198 ... A5H7Q8 30820467
    117147 6ab6:B (3.5) BS01 CA ? GO:0005198 ... A5H7Q8 30820467
    117148 6ab6:B (3.5) BS02 CA ? GO:0005198 ... A5H7Q8 30820467
    117149 6ab6:B (3.5) BS03 CA ? GO:0005198 ... A5H7Q8 30820467
    117150 6ab6:B (3.5) BS04 CA ? GO:0005198 ... A5H7Q8 30820467
    117151 6ab6:C (3.5) BS01 CA ? GO:0005198 ... A5H7Q8 30820467
    117152 6ab6:C (3.5) BS02 CA ? GO:0005198 ... A5H7Q8 30820467
    117153 6ab6:C (3.5) BS03 CA ? GO:0005198 ... A5H7Q8 30820467
    117154 6ab6:C (3.5) BS04 CA ? GO:0005198 ... A5H7Q8 30820467
    117155 6ab8:A (1.753) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117156 6abk:A (1.58) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117157 6abl:A (1.47) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117158 6abm:A (1.368) BS01 MG 6.1.1.26 GO:0000049 ... Q8PWY1 31031143
    117159 6ac9:D (2.07) BS01 MG 2.7.11.1 GO:0000785 ... Q99986 30461091
    117160 6acb:A (2.8) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 30148362
    117161 6ace:A (1.98) BS02 ZN 2.3.1.- GO:0036054 ... Q9NXA8 N/A
    117162 6aci:A (1.87) BS02 MN 2.4.1.- GO:0005515 ... B7UI21 30979585
    117163 6acl:A (1.92) BS02 ZN 2.3.1.- GO:0036054 ... Q9NXA8 N/A
    117164 6aco:A (1.71) BS02 ZN 2.3.1.- GO:0036054 ... Q9NXA8 N/A
    117165 6acp:A (2.3) BS02 ZN 2.3.1.- GO:0036054 ... Q9NXA8 N/A
    117166 6adh:A (2.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 7024556
    117167 6adh:A (2.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 7024556
    117168 6adh:B (2.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 7024556
    117169 6adh:B (2.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 7024556
    117170 6adj:A (2.18) BS03 CA 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    117171 6adj:B (2.18) BS03 CA 1.17.1.4
    1.17.3.2    		 GO:0000255 ... P22985 N/A
    117172 6adl:R (3.08) BS01 MG ? N/A Q9H6X2 30514821
    117173 6adm:R (2.84) BS01 MG ? N/A Q9H6X2 30514821
    117174 6adq:E (3.5) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 30361386
    117175 6adq:E (3.5) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 30361386
    117176 6adq:F (3.5) BS03 CU N/A GO:0004129 ... N/A 30361386
    117177 6adq:Q (3.5) BS01 CU 7.1.1.9 GO:0004129 ... A0R057 30361386
    117178 6adq:Q (3.5) BS02 CU 7.1.1.9 GO:0004129 ... A0R057 30361386
    117179 6adq:R (3.5) BS03 CU N/A GO:0004129 ... N/A 30361386
    117180 6adr:R (3.38) BS01 MG ? N/A Q9H6X2 30514821
    117181 6adu:A (1.96) BS02 CA ? N/A V5TER4 30222239
    117182 6adu:A (1.96) BS03 CA ? N/A V5TER4 30222239
    117183 6adu:B (1.96) BS02 CA ? N/A V5TER4 30222239
    117184 6adu:B (1.96) BS03 CA ? N/A V5TER4 30222239
    117185 6adu:C (1.96) BS03 CA ? N/A V5TER4 30222239
    117186 6adu:C (1.96) BS04 CA ? N/A V5TER4 30222239
    117187 6adu:D (1.96) BS03 CA ? N/A V5TER4 30222239
    117188 6adu:D (1.96) BS04 CA ? N/A V5TER4 30222239
    117189 6adx:A (1.752) BS02 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... Q32ZE1 30672289
    117190 6ady:A (1.9) BS02 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... Q32ZE1 30672289
    117191 6ae9:A (1.47) BS01 MG 3.1.3.16 N/A Q942P9 30453087
    117192 6ae9:A (1.47) BS03 MN 3.1.3.16 N/A Q942P9 30453087
    117193 6ae9:B (1.47) BS01 MG 3.1.3.16 N/A Q942P9 30453087
    117194 6ae9:B (1.47) BS04 MN 3.1.3.16 N/A Q942P9 30453087
    117195 6aec:A (1.72) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    117196 6aec:A (1.72) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    117197 6aef:A (2.16) BS01 ZN 2.3.1.288 GO:0003824 ... P9WIK7 N/A
    117198 6aef:B (2.16) BS01 ZN 2.3.1.288 GO:0003824 ... P9WIK7 N/A
    117199 6aeh:A (1.64) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    117200 6aeh:A (1.64) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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