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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    116801 5ztb:B (2.2) BS03 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    116802 5ztb:C (2.2) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    116803 5ztb:C (2.2) BS03 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    116804 5ztd:A (1.05) BS01 CU ? GO:0005507 ... P19567 N/A
    116805 5ztd:B (1.05) BS01 CU ? GO:0005507 ... P19567 N/A
    116806 5ztf:A (3.45) BS02 MG 7.2.2.10 GO:0000045 ... P16615 31018135
    116807 5ztf:A (3.45) BS03 CA 7.2.2.10 GO:0000045 ... P16615 31018135
    116808 5ztf:A (3.45) BS04 CA 7.2.2.10 GO:0000045 ... P16615 31018135
    116809 5zum:A (1.9) BS01 ZN ? GO:0005737 ... A0A5H1ZR28 N/A
    116810 5zum:B (1.9) BS01 ZN ? GO:0005737 ... A0A5H1ZR28 N/A
    116811 5zur:A (1.95) BS02 FE2 ? GO:0004322 ... A0A3F2YLV4 30198888
    116812 5zur:B (1.95) BS01 FE2 ? GO:0004322 ... A0A3F2YLV4 30198888
    116813 5zur:C (1.95) BS02 FE2 ? GO:0004322 ... A0A3F2YLV4 30198888
    116814 5zva:A (2.3) BS02 ZN 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    116815 5zva:B (2.3) BS02 ZN 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    116816 5zvb:A (2.0) BS02 ZN 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    116817 5zvb:B (2.0) BS02 ZN 3.5.4.38 GO:0003824 ... Q8IUX4
    Q9HC16
    N/A
    116818 5zvp:A (1.42) BS02 MG ? GO:0000148 ... A0A068C8U8 N/A
    116819 5zvq:A (2.5) BS01 ZN ? GO:0003677 ... Q5SHY0 N/A
    116820 5zvr:A (1.93) BS01 ZN 5.3.1.8 GO:0004476 ... P25081 31063150
    116821 5zvu:A (2.2) BS01 ZN 5.3.1.8 GO:0004476 ... P25081 31063150
    116822 5zvx:A (1.7) BS01 ZN 5.3.1.8 GO:0004476 ... P25081 31063150
    116823 5zw3:A (2.27) BS02 MG 2.1.1.- GO:0000287 ... O32036 29982645
    116824 5zw3:B (2.27) BS02 MG 2.1.1.- GO:0000287 ... O32036 29982645
    116825 5zwb:A (2.2) BS02 MG 2.7.1.35 GO:0000287 ... A0A0F7J8S0 31116912
    116826 5zwk:A (2.104) BS03 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    116827 5zwk:A (2.104) BS04 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    116828 5zwk:B (2.104) BS03 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    116829 5zwk:B (2.104) BS04 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    116830 5zwk:C (2.104) BS03 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    116831 5zwk:C (2.104) BS04 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    116832 5zwk:D (2.104) BS03 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    116833 5zwk:D (2.104) BS04 MG 3.1.3.11 GO:0000166 ... Q2TU34 N/A
    116834 5zwm:5 (3.4) BS02 ZN ? GO:0000245 ... Q06835 29794219
    116835 5zwm:5 (3.4) BS03 ZN ? GO:0000245 ... Q06835 29794219
    116836 5zwm:5 (3.4) BS04 ZN ? GO:0000245 ... Q06835 29794219
    116837 5zwm:C (3.4) BS03 MG ? GO:0000244 ... P36048 29794219
    116838 5zwm:u (3.4) BS02 ZN ? GO:0000395 ... P19736 29794219
    116839 5zwm:u (3.4) BS03 ZN ? GO:0000395 ... P19736 29794219
    116840 5zwm:v (3.4) BS03 ZN ? GO:0000245 ... Q07350 29794219
    116841 5zwn:R (3.4) BS03 ZN ? GO:0000243 ... Q05900 29794219
    116842 5zwn:Y (3.4) BS03 ZN ? GO:0000243 ... Q07508 29794219
    116843 5zwo:C (3.9) BS03 MG ? GO:0000244 ... P36048 29794219
    116844 5zx2:D (2.8) BS04 ZN 2.7.7.6 GO:0000287 ... P9WGY7 30858373
    116845 5zx2:D (2.8) BS05 ZN 2.7.7.6 GO:0000287 ... P9WGY7 30858373
    116846 5zx3:D (2.751) BS01 ZN 2.7.7.6 GO:0000287 ... P9WGY7 30858373
    116847 5zx3:D (2.751) BS02 ZN 2.7.7.6 GO:0000287 ... P9WGY7 30858373
    116848 5zxg:A (2.4) BS01 CA ? GO:0005975 ... D2YYE1 30181215
    116849 5zxh:A (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    116850 5zxh:C (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    116851 5zxl:A (2.794) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 30839292
    116852 5zxl:B (2.794) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 30839292
    116853 5zxl:C (2.794) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 30839292
    116854 5zxl:D (2.794) BS01 ZN 1.1.1.6
    1.1.1.75
    GO:0005829 ... P0A9S5 30839292
    116855 5zxw:A (1.316) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    116856 5zy9:C (2.5) BS02 ZN 6.1.1.3 GO:0000166 ... G3FIN0 N/A
    116857 5zy9:D (2.5) BS02 ZN 6.1.1.3 GO:0000166 ... G3FIN0 N/A
    116858 5zy9:E (2.5) BS02 ZN 6.1.1.3 GO:0000166 ... G3FIN0 N/A
    116859 5zyb:A (2.13) BS02 ZN 3.5.2.6 GO:0008800 ... Q51578 N/A
    116860 5zyc:A (1.75) BS01 MN 5.3.1.5 GO:0000287 ... P24300 29909012
    116861 5zyc:A (1.75) BS02 MN 5.3.1.5 GO:0000287 ... P24300 29909012
    116862 5zyd:A (1.4) BS01 MG 5.3.1.5 GO:0000287 ... P24300 29909012
    116863 5zye:A (1.4) BS01 MN 5.3.1.5 GO:0000287 ... P24300 29909012
    116864 5zye:A (1.4) BS02 MN 5.3.1.5 GO:0000287 ... P24300 29909012
    116865 5zyv:A (2.72) BS02 CA 3.1.-.- N/A Q9BQP7 30247721
    116866 5zyv:A (2.72) BS03 CA 3.1.-.- N/A Q9BQP7 30247721
    116867 5zyw:A (2.2) BS01 MN 3.1.-.- N/A Q9BQP7 30247721
    116868 5zyw:A (2.2) BS02 MN 3.1.-.- N/A Q9BQP7 30247721
    116869 5zyw:A (2.2) BS03 MN 3.1.-.- N/A Q9BQP7 30247721
    116870 5zz0:A (2.635) BS01 CA ? GO:0051015 ... P06396 30135452
    116871 5zz0:A (2.635) BS02 CA ? GO:0051015 ... P06396 30135452
    116872 5zz0:G (2.635) BS01 CA ? GO:0051015 ... P06396 30135452
    116873 5zz0:G (2.635) BS02 CA ? GO:0051015 ... P06396 30135452
    116874 5zz1:A (1.91) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    116875 5zz1:B (1.91) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    116876 5zz1:C (1.91) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    116877 5zz1:D (1.91) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    116878 5zz2:A (2.6) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 30148362
    116879 5zzn:A (2.1) BS07 FE2 1.10.3.9 GO:0005506 ... P0A444 30076221
    116880 5zzn:D (2.1) BS05 FE2 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    116881 5zzn:J (2.1) BS01 MG ? GO:0009523 ... P59087 30076221
    116882 5zzn:K (2.1) BS04 MG ? GO:0009523 ... Q9F1K9 30076221
    116883 5zzn:O (2.1) BS01 CA ? GO:0009523 ... P0A431 30076221
    116884 5zzn:a (2.1) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 30076221
    116885 5zzn:c (2.1) BS02 CA ? GO:0005737 ... Q8DIF8 30076221
    116886 5zzn:d (2.1) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 30076221
    116887 5zzn:j (2.1) BS01 MG ? GO:0009523 ... P59087 30076221
    116888 5zzn:k (2.1) BS04 MG ? GO:0009523 ... Q9F1K9 30076221
    116889 5zzn:o (2.1) BS01 CA ? GO:0009523 ... P0A431 30076221
    116890 5zzu:A (2.1) BS01 ZN 2.7.-.- GO:0016772 ... P0CB39 N/A
    116891 5zzu:B (2.1) BS01 ZN 2.7.-.- GO:0016772 ... P0CB39 N/A
    116892 5zzu:C (2.1) BS01 ZN 2.7.-.- GO:0016772 ... P0CB39 N/A
    116893 621p:A (2.4) BS01 MG 3.6.5.2 GO:0003924 ... P01112 2199064
    116894 6a00:A (1.59) BS01 MG 1.1.3.46 GO:0004459 ... O52792 31373572
    116895 6a08:A (1.547) BS01 MG 1.1.3.46 GO:0004459 ... O52792 31588923
    116896 6a0j:A (1.6) BS05 CA ? GO:0005975 ... D2YYE1 30181215
    116897 6a0k:B (1.94) BS06 CA ? GO:0005975 ... D2YYE1 30181215
    116898 6a12:A (2.145) BS01 CA 3.1.1.3 GO:0004806 ... Q8L1V2 30471860
    116899 6a12:A (2.145) BS02 ZN 3.1.1.3 GO:0004806 ... Q8L1V2 30471860
    116900 6a1d:A (1.78) BS02 MG ? GO:0000287 ... A0A0A0RDR2 N/A
    116901 6a1d:A (1.78) BS03 MG ? GO:0000287 ... A0A0A0RDR2 N/A
    116902 6a1l:A (1.4) BS02 MG 1.1.3.46 GO:0004459 ... O52792 31588923
    116903 6a1m:A (1.55) BS02 MG 1.1.3.46 GO:0004459 ... O52792 31588923
    116904 6a1p:A (1.51) BS02 MG 1.1.3.46 GO:0004459 ... O52792 31588923
    116905 6a1r:A (1.652) BS02 MG 1.1.3.46 GO:0004459 ... O52792 31588923
    116906 6a1w:A (1.7) BS01 MG 1.1.3.46 GO:0004459 ... O52792 32362037
    116907 6a1z:A (2.58) BS02 MG ? GO:0003777 ... A0A0G2K8Z9 30463954
    116908 6a1z:A (2.58) BS03 MG ? GO:0003777 ... A0A0G2K8Z9 30463954
    116909 6a23:A (1.65) BS02 MG 1.1.3.46 GO:0004459 ... O52792 31588923
    116910 6a2c:A (1.94) BS02 MG ? GO:0000287 ... A0A0A0RCB5 N/A
    116911 6a2c:A (1.94) BS03 MG ? GO:0000287 ... A0A0A0RCB5 N/A
    116912 6a2c:B (1.94) BS02 MG ? GO:0000287 ... A0A0A0RCB5 N/A
    116913 6a2c:B (1.94) BS03 MG ? GO:0000287 ... A0A0A0RCB5 N/A
    116914 6a2d:A (1.96) BS02 MG ? GO:0000287 ... A0A0A0RCB5 N/A
    116915 6a2d:A (1.96) BS03 MG ? GO:0000287 ... A0A0A0RCB5 N/A
    116916 6a2d:B (1.96) BS02 MG ? GO:0000287 ... A0A0A0RCB5 N/A
    116917 6a2d:B (1.96) BS03 MG ? GO:0000287 ... A0A0A0RCB5 N/A
    116918 6a2w:A (1.8) BS01 CA ? GO:0009416 ... B7FRW2 30733387
    116919 6a38:A (2.69) BS02 MG 3.6.5.- GO:0000054 ... P62826 33883894
    116920 6a3a:A (2.3) BS02 MG 3.6.5.- GO:0000054 ... P62826 33883894
    116921 6a3b:A (2.51) BS02 MG 3.6.5.- GO:0000054 ... P62826 33883894
    116922 6a3c:A (2.35) BS02 MG 3.6.5.- GO:0000054 ... P62826 33883894
    116923 6a3e:A (2.7) BS02 MG 3.6.5.- GO:0000054 ... P62826 33883894
    116924 6a3n:A (2.6) BS01 ZN 3.1.4.35 GO:0004114 ... O76083 30916555
    116925 6a3n:B (2.6) BS01 ZN 3.1.4.35 GO:0004114 ... O76083 30916555
    116926 6a3z:A (-1.00) BS01 ZN 2.3.2.27 N/A Q86TM6 N/A
    116927 6a3z:A (-1.00) BS02 ZN 2.3.2.27 N/A Q86TM6 N/A
    116928 6a46:A (2.0) BS01 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116929 6a46:A (2.0) BS03 CA 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116930 6a46:B (2.0) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116931 6a46:B (2.0) BS03 CA 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116932 6a47:A (1.9) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116933 6a47:B (1.9) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116934 6a48:A (2.0) BS01 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    116935 6a48:A (2.0) BS02 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    116936 6a48:A (2.0) BS03 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    116937 6a48:A (2.0) BS04 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    116938 6a48:A (2.0) BS05 CA 3.4.21.- GO:0001764 ... Q60841 33377147
    116939 6a4b:A (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116940 6a4b:A (2.7) BS03 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116941 6a4b:B (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116942 6a4b:C (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116943 6a4b:D (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116944 6a4b:E (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116945 6a4b:E (2.7) BS03 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116946 6a4b:F (2.7) BS02 MG 3.1.11.2 GO:0000287 ... Q9R1A9 30357414
    116947 6a4u:C (1.16) BS01 MG 1.16.3.1 GO:0004322 ... T2B7E1 30099791
    116948 6a4u:D (1.16) BS01 MG 1.16.3.1 GO:0004322 ... T2B7E1 30099791
    116949 6a4x:A (1.63) BS01 FE2 ? GO:0046872 ... A0A124H109 30067334
    116950 6a4y:A (1.92) BS02 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    116951 6a4z:A (1.7) BS01 FE2 ? GO:0004462 ... Q4R0L3 30067334
    116952 6a4z:B (1.7) BS01 FE2 ? GO:0004462 ... Q4R0L3 30067334
    116953 6a50:A (1.8) BS01 MG N/A GO:0000287 ... N/A N/A
    116954 6a50:A (1.8) BS03 MG N/A GO:0000287 ... N/A N/A
    116955 6a50:B (1.8) BS02 MG N/A GO:0000287 ... N/A N/A
    116956 6a50:B (1.8) BS03 MG N/A GO:0000287 ... N/A N/A
    116957 6a52:A (2.0) BS01 FE2 ? GO:0046872 ... A0A3F2YLV5 30067334
    116958 6a52:B (2.0) BS01 FE2 ? GO:0046872 ... A0A3F2YLV5 30067334
    116959 6a53:A (2.0) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    116960 6a53:B (2.0) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    116961 6a54:A (2.3) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    116962 6a54:B (2.3) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    116963 6a55:A (1.6) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    116964 6a55:B (1.6) BS01 MN ? GO:0046872 ... Q4FNM4 30770407
    116965 6a56:A (1.2) BS02 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    116966 6a56:A (1.2) BS03 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    116967 6a56:B (1.2) BS02 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    116968 6a56:B (1.2) BS03 CA ? GO:0030246 ... A0A2Z5WLM1 30068923
    116969 6a57:A (2.7) BS03 ZN 1.14.11.- N/A Q9STM3 32257379
    116970 6a57:A (2.7) BS04 ZN 1.14.11.- N/A Q9STM3 32257379
    116971 6a57:A (2.7) BS05 ZN 1.14.11.- N/A Q9STM3 32257379
    116972 6a57:A (2.7) BS06 ZN 1.14.11.- N/A Q9STM3 32257379
    116973 6a58:A (1.57) BS01 ZN 1.14.11.- N/A Q9STM3 32257379
    116974 6a58:A (1.57) BS02 ZN 1.14.11.- N/A Q9STM3 32257379
    116975 6a58:A (1.57) BS03 ZN 1.14.11.- N/A Q9STM3 32257379
    116976 6a58:A (1.57) BS04 ZN 1.14.11.- N/A Q9STM3 32257379
    116977 6a59:A (1.82) BS01 ZN 1.14.11.- N/A Q9STM3 32257379
    116978 6a59:A (1.82) BS02 ZN 1.14.11.- N/A Q9STM3 32257379
    116979 6a59:A (1.82) BS03 ZN 1.14.11.- N/A Q9STM3 32257379
    116980 6a59:A (1.82) BS04 ZN 1.14.11.- N/A Q9STM3 32257379
    116981 6a5k:A (1.9) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    116982 6a5k:A (1.9) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    116983 6a5k:A (1.9) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    116984 6a5k:A (1.9) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    116985 6a5l:A (5.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    116986 6a5l:A (5.6) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    116987 6a5l:A (5.6) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30287617
    116988 6a5l:B (5.6) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30287617
    116989 6a5l:C (5.6) BS01 ZN ? GO:0000428 ... C4R7L2 30287617
    116990 6a5l:I (5.6) BS01 ZN ? GO:0000428 ... F2QPE6 30287617
    116991 6a5l:I (5.6) BS02 ZN ? GO:0000428 ... F2QPE6 30287617
    116992 6a5l:J (5.6) BS01 ZN ? GO:0000428 ... C4R009 30287617
    116993 6a5m:A (2.301) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    116994 6a5m:A (2.301) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    116995 6a5m:A (2.301) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    116996 6a5m:A (2.301) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    116997 6a5n:A (2.4) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    116998 6a5n:A (2.4) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    116999 6a5n:A (2.4) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0005634 ... Q8VZ17 30150382
    117000 6a5o:A (9.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30287617

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218