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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    116601 5zop:G (2.698) BS02 ZN 3.5.1.98 N/A P56524 30321390
    116602 5zop:G (2.698) BS03 ZN 3.5.1.98 N/A P56524 30321390
    116603 5zou:A (1.68) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116604 5zou:B (1.68) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116605 5zov:A (3.333) BS02 CA ? GO:0009401 ... Q9CMQ1 30038796
    116606 5zow:A (1.778) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116607 5zow:B (1.778) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116608 5zox:A (1.691) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116609 5zox:B (1.691) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116610 5zoy:A (1.695) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116611 5zoy:B (1.695) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116612 5zoz:A (1.702) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116613 5zoz:B (1.702) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116614 5zp0:A (1.738) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116615 5zp0:B (1.738) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116616 5zp1:A (1.669) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116617 5zp1:B (1.669) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116618 5zp2:A (1.748) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116619 5zp2:B (1.748) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116620 5zp3:A (1.782) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116621 5zp3:B (1.782) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116622 5zp4:A (1.799) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116623 5zp4:B (1.799) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116624 5zp5:A (1.767) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116625 5zp5:B (1.767) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116626 5zp6:A (1.688) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116627 5zp6:B (1.688) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116628 5zp7:A (1.631) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116629 5zp7:B (1.631) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116630 5zp8:A (1.66) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116631 5zp8:B (1.66) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116632 5zp9:A (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116633 5zp9:B (1.7) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116634 5zpa:A (1.689) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116635 5zpa:B (1.689) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116636 5zpb:A (1.793) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116637 5zpb:B (1.793) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116638 5zpc:A (1.741) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116639 5zpc:B (1.741) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116640 5zpd:A (1.665) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116641 5zpd:B (1.665) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116642 5zpe:A (1.689) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116643 5zpe:B (1.689) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116644 5zpf:A (1.759) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116645 5zpf:B (1.759) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116646 5zpg:A (1.649) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116647 5zpg:B (1.649) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116648 5zph:A (1.72) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116649 5zph:B (1.72) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116650 5zpi:A (1.747) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116651 5zpi:B (1.747) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116652 5zpj:A (1.647) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116653 5zpj:B (1.647) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116654 5zpk:A (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116655 5zpk:B (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116656 5zpl:A (1.6) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116657 5zpl:B (1.6) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116658 5zpm:A (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116659 5zpm:B (1.65) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116660 5zpn:A (1.6) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116661 5zpn:B (1.6) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116662 5zpo:A (1.73) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116663 5zpo:B (1.73) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116664 5zpp:A (1.81) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116665 5zpp:B (1.81) BS02 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116666 5zpq:A (1.849) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116667 5zpq:B (1.849) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116668 5zpr:A (1.922) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116669 5zpr:B (1.922) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116670 5zps:A (1.748) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116671 5zps:B (1.748) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116672 5zpt:A (1.902) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116673 5zpt:B (1.902) BS01 CU 1.4.3.21 GO:0005507 ... P46881 30563857
    116674 5zpu:A (2.6) BS02 MG 3.6.5.- GO:0000054 ... P62826 N/A
    116675 5zqa:A (1.55) BS01 MG ? GO:0006508 ... Q8Y3M3 30082290
    116676 5zqf:A (3.873) BS03 MN 5.6.2.2 GO:0003677 ... Q02880 30082834
    116677 5zqk:A (2.3) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... H9M652 31597763
    116678 5zqk:A (2.3) BS03 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... H9M652 31597763
    116679 5zqk:B (2.3) BS02 MG 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... H9M652 31597763
    116680 5zqk:B (2.3) BS03 MG 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... H9M652 31597763
    116681 5zqk:B (2.3) BS04 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... H9M652 31597763
    116682 5zqk:B (2.3) BS05 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... H9M652 31597763
    116683 5zqn:A (1.8) BS01 MN 4.2.1.19 GO:0000105 ... P9WML9 34288118
    116684 5zqn:A (1.8) BS02 MN 4.2.1.19 GO:0000105 ... P9WML9 34288118
    116685 5zqo:A (2.06) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 30883102
    116686 5zqp:A (1.99) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 30883102
    116687 5zqq:A (2.29) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 30883102
    116688 5zqr:A (1.75) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... Q9H2K2 30883102
    116689 5zqv:A (2.95) BS02 MN 3.1.3.16 GO:0000164 ... P62137 30422398
    116690 5zqv:B (2.95) BS03 MN 3.1.3.16 GO:0000164 ... P62137 30422398
    116691 5zqv:C (2.95) BS02 MN 3.1.3.16 GO:0000164 ... P62137 30422398
    116692 5zqv:D (2.95) BS02 MN 3.1.3.16 GO:0000164 ... P62137 30422398
    116693 5zqy:A (1.577) BS01 MG 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 30045870
    116694 5zqy:A (1.577) BS02 MG 3.2.1.143
    3.2.2.-
    3.5.1.-    		 GO:0000287 ... Q9NX46 30045870
    116695 5zr6:A (3.0) BS01 MN ? GO:0003677 ... I6Y1Q2 29730293
    116696 5zr6:A (3.0) BS02 MN ? GO:0003677 ... I6Y1Q2 29730293
    116697 5zr6:A (3.0) BS03 MN ? GO:0003677 ... I6Y1Q2 29730293
    116698 5zr6:B (3.0) BS01 MN ? GO:0003677 ... I6Y1Q2 29730293
    116699 5zr6:B (3.0) BS02 MN ? GO:0003677 ... I6Y1Q2 29730293
    116700 5zr6:B (3.0) BS03 MN ? GO:0003677 ... I6Y1Q2 29730293
    116701 5zr8:A (1.5) BS01 ZN 3.5.2.6 GO:0016787 ... E5KIY2 N/A
    116702 5zr8:A (1.5) BS02 ZN 3.5.2.6 GO:0016787 ... E5KIY2 N/A
    116703 5zr8:A (1.5) BS03 ZN 3.5.2.6 GO:0016787 ... E5KIY2 N/A
    116704 5zr8:E (1.5) BS01 ZN 3.5.2.6 GO:0016787 ... E5KIY2 N/A
    116705 5zr8:E (1.5) BS02 ZN 3.5.2.6 GO:0016787 ... E5KIY2 N/A
    116706 5zr8:E (1.5) BS03 ZN 3.5.2.6 GO:0016787 ... E5KIY2 N/A
    116707 5zrd:A (2.3) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116708 5zrd:A (2.3) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116709 5zrd:B (2.3) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116710 5zrd:B (2.3) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116711 5zrd:C (2.3) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116712 5zrd:C (2.3) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116713 5zrd:D (2.3) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116714 5zrd:D (2.3) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116715 5zre:A (2.5) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116716 5zre:A (2.5) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116717 5zre:B (2.5) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116718 5zre:B (2.5) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116719 5zre:C (2.5) BS01 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116720 5zre:C (2.5) BS02 CU 1.14.18.1 GO:0004497 ... Q2T7K1 N/A
    116721 5zrf:A (2.3) BS03 MG 5.6.2.2 GO:0003677 ... Q02880 30082834
    116722 5zrf:B (2.3) BS03 MG 5.6.2.2 GO:0003677 ... Q02880 30082834
    116723 5zri:A (1.58) BS02 MG 3.6.1.55 GO:0000166 ... A0R2K6 30312643
    116724 5zrq:A (1.12) BS01 ZN 3.1.1.74 N/A W0TJ64 30110540
    116725 5zrq:A (1.12) BS02 ZN 3.1.1.74 N/A W0TJ64 30110540
    116726 5zrq:A (1.12) BS03 ZN 3.1.1.74 N/A W0TJ64 30110540
    116727 5zrq:A (1.12) BS04 CA 3.1.1.74 N/A W0TJ64 30110540
    116728 5zrr:A (1.34) BS02 ZN 3.1.1.74 N/A W0TJ64 30110540
    116729 5zrr:A (1.34) BS03 ZN 3.1.1.74 N/A W0TJ64 30110540
    116730 5zrr:A (1.34) BS04 ZN 3.1.1.74 N/A W0TJ64 30110540
    116731 5zrs:A (1.4) BS02 ZN 3.1.1.74 N/A W0TJ64 30110540
    116732 5zrs:A (1.4) BS03 ZN 3.1.1.74 N/A W0TJ64 30110540
    116733 5zrs:A (1.4) BS04 ZN 3.1.1.74 N/A W0TJ64 30110540
    116734 5zrs:A (1.4) BS05 CA 3.1.1.74 N/A W0TJ64 30110540
    116735 5zrt:A (1.9) BS01 ZN ? GO:0005515 ... Q9NWV4 30280012
    116736 5zrt:B (1.9) BS01 ZN ? GO:0005515 ... Q9NWV4 30280012
    116737 5zru:A (1.833) BS01 ZN ? N/A Q0WYG9 31653959
    116738 5zru:A (1.833) BS02 ZN ? N/A Q0WYG9 31653959
    116739 5zru:A (1.833) BS03 CA ? N/A Q0WYG9 31653959
    116740 5zru:A (1.833) BS04 CA ? N/A Q0WYG9 31653959
    116741 5zru:A (1.833) BS05 CA ? N/A Q0WYG9 31653959
    116742 5zru:A (1.833) BS06 CA ? N/A Q0WYG9 31653959
    116743 5zru:C (1.833) BS01 ZN ? N/A Q0WYG9 31653959
    116744 5zru:C (1.833) BS02 ZN ? N/A Q0WYG9 31653959
    116745 5zru:C (1.833) BS03 CA ? N/A Q0WYG9 31653959
    116746 5zru:C (1.833) BS04 CA ? N/A Q0WYG9 31653959
    116747 5zru:C (1.833) BS05 CA ? N/A Q0WYG9 31653959
    116748 5zru:C (1.833) BS06 CA ? N/A Q0WYG9 31653959
    116749 5zsx:A (2.2) BS01 CA 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    116750 5zsx:A (2.2) BS02 FE 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    116751 5zsz:A (2.4) BS01 CA 1.13.11.2 GO:0003824 ... A0A509GUM5 N/A
    116752 5zsz:A (2.4) BS02 FE 1.13.11.2 GO:0003824 ... A0A509GUM5 N/A
    116753 5zt0:A (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116754 5zt0:A (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116755 5zt0:B (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116756 5zt0:B (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116757 5zt0:C (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116758 5zt0:C (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116759 5zt0:D (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116760 5zt0:D (3.32043) BS03 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116761 5zt0:E (3.32043) BS01 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116762 5zt0:E (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116763 5zt0:F (3.32043) BS01 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116764 5zt0:F (3.32043) BS02 MN 3.1.3.16 GO:0016787 ... P62137 30422398
    116765 5zt1:A (3.114) BS01 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116766 5zt1:A (3.114) BS03 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116767 5zt1:A (3.114) BS04 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116768 5zt1:A (3.114) BS05 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116769 5zt1:A (3.114) BS06 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116770 5zt1:A (3.114) BS07 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116771 5zt1:A (3.114) BS08 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116772 5zt1:A (3.114) BS09 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116773 5zt1:A (3.114) BS10 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116774 5zt1:B (3.114) BS01 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116775 5zt1:B (3.114) BS02 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116776 5zt1:B (3.114) BS03 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116777 5zt1:B (3.114) BS04 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116778 5zt1:B (3.114) BS05 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116779 5zt1:B (3.114) BS06 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116780 5zt1:B (3.114) BS07 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116781 5zt1:B (3.114) BS08 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116782 5zt1:B (3.114) BS09 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116783 5zt1:B (3.114) BS10 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116784 5zt1:B (3.114) BS11 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116785 5zt1:B (3.114) BS12 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116786 5zt1:B (3.114) BS13 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116787 5zt1:B (3.114) BS14 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    116788 5zt7:A (2.94) BS01 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    116789 5zt7:A (2.94) BS02 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    116790 5zt7:A (2.94) BS03 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    116791 5zt7:A (2.94) BS04 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    116792 5zt7:B (2.94) BS01 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    116793 5zt7:B (2.94) BS02 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    116794 5zt7:B (2.94) BS03 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    116795 5zt7:B (2.94) BS04 CO 4.99.1.4 GO:0006779 ... O34632 30778451
    116796 5zta:A (3.07) BS01 FE 4.99.1.4 GO:0006779 ... O34632 N/A
    116797 5zta:B (3.07) BS01 FE 4.99.1.4 GO:0006779 ... O34632 N/A
    116798 5ztb:A (2.2) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    116799 5ztb:A (2.2) BS03 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    116800 5ztb:B (2.2) BS02 ZN 2.8.1.15 GO:0000049 ... Q72LF3 32265486
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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