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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    116401 5zgt:A (1.2) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116402 5zgt:A (1.2) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116403 5zgt:B (1.2) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116404 5zgt:B (1.2) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116405 5zgu:A (1.55) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116406 5zgu:A (1.55) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116407 5zgu:B (1.55) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116408 5zgu:B (1.55) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116409 5zgv:A (1.15) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116410 5zgv:A (1.15) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116411 5zgv:B (1.15) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116412 5zgv:B (1.15) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116413 5zgw:A (0.95) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116414 5zgw:A (0.95) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116415 5zgx:A (0.95) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116416 5zgx:A (0.95) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116417 5zgy:A (0.95) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116418 5zgy:A (0.95) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116419 5zgz:A (0.95) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116420 5zgz:A (0.95) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116421 5zh1:A (1.05) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116422 5zh1:A (1.05) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116423 5zh1:B (1.05) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116424 5zh1:B (1.05) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116425 5zh6:A (1.54) BS01 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    116426 5zh6:A (1.54) BS02 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    116427 5zh6:B (1.54) BS01 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    116428 5zh6:B (1.54) BS02 CA ? GO:0005509 ... A0A3F2YLV2 29969026
    116429 5zha:A (1.84) BS01 MN ? GO:0007155 ... C6XF58 30125692
    116430 5zhf:A (1.65) BS01 ZN 3.4.17.- GO:0006508 ... Q47746 30016658
    116431 5zhf:B (1.65) BS01 ZN 3.4.17.- GO:0006508 ... Q47746 30016658
    116432 5zhv:A (2.4) BS01 ZN ? GO:0003677 ... I6X7F9 30266832
    116433 5zhv:A (2.4) BS02 ZN ? GO:0003677 ... I6X7F9 30266832
    116434 5zhv:B (2.4) BS01 ZN ? GO:0003677 ... I6X7F9 30266832
    116435 5zhw:A (2.18) BS01 CU 3.4.17.- GO:0006508 ... Q47746 30016658
    116436 5zhw:B (2.18) BS01 CU 3.4.17.- GO:0006508 ... Q47746 30016658
    116437 5zhz:A (1.18) BS01 ZN 3.1.21.2 GO:0003677 ... P9WQ13 29496453
    116438 5zhz:A (1.18) BS02 ZN 3.1.21.2 GO:0003677 ... P9WQ13 29496453
    116439 5zhz:A (1.18) BS03 ZN 3.1.21.2 GO:0003677 ... P9WQ13 29496453
    116440 5zi5:A (2.6) BS01 ZN 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    116441 5zi5:B (2.6) BS01 ZN 3.4.11.2 GO:0004177 ... Q5ZVE3 30172821
    116442 5zi6:A (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116443 5zi6:A (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116444 5zi6:B (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116445 5zi6:B (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116446 5zi6:C (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116447 5zi6:C (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116448 5zi6:D (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116449 5zi6:D (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116450 5zi6:E (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116451 5zi6:E (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116452 5zi6:F (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116453 5zi6:F (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116454 5zi6:G (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116455 5zi6:G (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116456 5zi6:H (2.2) BS01 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116457 5zi6:H (2.2) BS02 ZN 2.3.2.27 GO:0003723 ... Q5U5Q3 30095198
    116458 5zi8:A (2.2) BS01 CD ? GO:0003677 ... I6X7F9 30266832
    116459 5zi8:B (2.2) BS01 CD ? GO:0003677 ... I6X7F9 30266832
    116460 5zio:A (0.98) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116461 5zio:A (0.98) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116462 5zj1:A (0.96) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116463 5zj1:A (0.96) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116464 5zj2:A (1.1) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116465 5zj2:A (1.1) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116466 5zj7:A (0.96) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116467 5zj7:A (0.96) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116468 5zj8:A (0.96) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116469 5zj8:A (0.96) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116470 5zjc:A (0.96) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116471 5zjc:A (0.96) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    116472 5zjk:A (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116473 5zjk:B (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116474 5zjk:C (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116475 5zjk:D (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116476 5zjk:E (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116477 5zjk:F (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116478 5zjk:G (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116479 5zjk:H (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116480 5zjk:I (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116481 5zjk:J (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116482 5zjk:K (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116483 5zjk:L (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116484 5zjk:M (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116485 5zjk:N (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116486 5zjk:O (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116487 5zjk:P (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116488 5zjk:Q (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116489 5zjk:R (2.6) BS01 ZN ? GO:0004222 ... A0A0P0DZ84 31785296
    116490 5zjv:A (1.82) BS02 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 N/A
    116491 5zkq:A (2.9) BS02 ZN 3.2.1.17 GO:0003796 ... P00720
    P25105    		 29808000
    116492 5zkq:B (2.9) BS02 ZN 3.2.1.17 GO:0003796 ... P00720
    P25105    		 29808000
    116493 5zl1:A (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116494 5zl1:A (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116495 5zl1:A (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116496 5zl1:B (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116497 5zl1:B (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116498 5zl1:B (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116499 5zl1:C (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116500 5zl1:C (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116501 5zl1:C (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116502 5zl1:D (3.2) BS01 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116503 5zl1:D (3.2) BS02 CU 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116504 5zl1:D (3.2) BS03 CA 1.7.2.1 GO:0005507 ... I3IR93 N/A
    116505 5zlc:A (2.0) BS01 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    116506 5zlc:A (2.0) BS02 MN 2.7.7.7 GO:0003677 ... Q9NP87 31067051
    116507 5zlf:A (2.845) BS02 MG 2.5.1.90 GO:0004659 ... P0AD57 30730737
    116508 5zlj:A (1.96) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116509 5zlj:A (1.96) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116510 5zlj:A (1.96) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116511 5zlj:A (1.96) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116512 5zlk:A (2.6) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116513 5zlk:A (2.6) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116514 5zlk:A (2.6) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116515 5zlk:A (2.6) BS04 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116516 5zll:A (2.6) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116517 5zll:A (2.6) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116518 5zll:A (2.6) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116519 5zlm:A (1.7) BS01 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116520 5zlm:A (1.7) BS02 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116521 5zlm:A (1.7) BS03 CU 1.10.3.2
    1.3.3.5    		 GO:0005507 ... P07788 29722464
    116522 5zlp:I (2.93) BS03 MG 6.3.1.2 GO:0003824 ... P94845 30076387
    116523 5zlp:J (2.93) BS03 MG 6.3.1.2 GO:0003824 ... P94845 30076387
    116524 5zlp:L (2.93) BS02 MG 6.3.1.2 GO:0003824 ... P94845 30076387
    116525 5zlq:A (2.0) BS01 ZN ? GO:0005515 ... Q9NWV4 30260988
    116526 5zlv:A (2.35) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    116527 5zlv:A (2.35) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    116528 5zlv:F (2.35) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    116529 5zlv:F (2.35) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    116530 5zm3:A (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    116531 5zm3:B (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    116532 5zm3:C (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    116533 5zm3:D (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    116534 5zm4:A (1.95) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    116535 5zm4:B (1.95) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    116536 5zm4:C (1.95) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    116537 5zm4:D (1.95) BS01 FE 1.14.11.- GO:0016114 ... A0A097ZPD5 29972643
    116538 5zmd:A (3.3) BS03 MN 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435
    116539 5zmd:C (3.3) BS03 MN 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435
    116540 5zmd:E (3.3) BS03 MN 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435
    116541 5zmd:G (3.3) BS03 MN 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 30718435
    116542 5zmm:A (3.15) BS01 ZN ? GO:0003676 ... Q9L0M9 30409991
    116543 5zmm:B (3.15) BS01 ZN ? GO:0003676 ... Q9L0M9 30409991
    116544 5zmm:C (3.15) BS01 ZN ? GO:0003676 ... Q9L0M9 30409991
    116545 5zmm:D (3.15) BS01 ZN ? GO:0003676 ... Q9L0M9 30409991
    116546 5zmm:E (3.15) BS01 ZN ? GO:0003676 ... Q9L0M9 30409991
    116547 5zmm:F (3.15) BS01 ZN ? GO:0003676 ... Q9L0M9 30409991
    116548 5zmp:A (2.19) BS01 ZN ? GO:0000122 ... B1XMP1 N/A
    116549 5zmu:A (1.5) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116550 5zmu:B (1.5) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116551 5zmu:C (1.5) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116552 5zmu:D (1.5) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116553 5zmy:A (1.87) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116554 5zmy:B (1.87) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116555 5zmy:C (1.87) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116556 5zmy:D (1.87) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116557 5zmy:E (1.87) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116558 5zmy:F (1.87) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116559 5zmy:G (1.87) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116560 5zmy:H (1.87) BS01 ZN ? GO:0016787 ... F1LJ99 30003205
    116561 5zn8:A (2.0) BS01 ZN N/A N/A N/A 30107912
    116562 5zn8:B (2.0) BS01 ZN N/A N/A N/A 30107912
    116563 5znf:A (-1.00) BS01 ZN ? N/A P08048 1849423
    116564 5znh:A (2.4) BS01 FE 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    116565 5znh:A (2.4) BS03 CA 1.13.11.2 GO:0003824 ... A0A4V8GZK8 N/A
    116566 5znk:A (2.07) BS02 MG N/A GO:0000166 ... N/A 36394909
    116567 5znl:A (2.8) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 30689375
    116568 5znl:B (2.8) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 30689375
    116569 5zno:A (1.60264) BS01 CA 3.1.1.74 N/A W0TJ64 30110540
    116570 5zno:A (1.60264) BS02 CA 3.1.1.74 N/A W0TJ64 30110540
    116571 5zno:A (1.60264) BS03 CA 3.1.1.74 N/A W0TJ64 30110540
    116572 5zno:B (1.60264) BS01 CA 3.1.1.74 N/A W0TJ64 30110540
    116573 5zno:B (1.60264) BS02 CA 3.1.1.74 N/A W0TJ64 30110540
    116574 5zno:B (1.60264) BS03 CA 3.1.1.74 N/A W0TJ64 30110540
    116575 5znp:A (2.8) BS02 ZN ? GO:0003682 ... B9H0V2 29930355
    116576 5znp:A (2.8) BS03 ZN ? GO:0003682 ... B9H0V2 29930355
    116577 5znp:B (2.8) BS02 ZN ? GO:0003682 ... B9H0V2 29930355
    116578 5znr:A (3.202) BS02 ZN ? GO:0003682 ... B9H0V2 29930355
    116579 5znr:A (3.202) BS03 ZN ? GO:0003682 ... B9H0V2 29930355
    116580 5znr:B (3.202) BS02 ZN ? GO:0003682 ... B9H0V2 29930355
    116581 5znr:B (3.202) BS03 ZN ? GO:0003682 ... B9H0V2 29930355
    116582 5zns:A (2.396) BS01 ZN 3.5.1.41 GO:0005975 ... H9J9M0 30755482
    116583 5znt:A (1.979) BS01 ZN 3.5.1.41 GO:0005975 ... H9J9M0 30755482
    116584 5zo4:A (2.5) BS01 MN N/A GO:0003676 ... N/A 30666241
    116585 5zo4:A (2.5) BS02 MN N/A GO:0003676 ... N/A 30666241
    116586 5zo4:B (2.5) BS01 MN N/A GO:0003676 ... N/A 30666241
    116587 5zo4:B (2.5) BS02 MN N/A GO:0003676 ... N/A 30666241
    116588 5zo5:A (2.297) BS01 MN N/A GO:0003676 ... N/A 30666241
    116589 5zo5:A (2.297) BS02 MN N/A GO:0003676 ... N/A 30666241
    116590 5zo5:B (2.297) BS01 MN N/A GO:0003676 ... N/A 30666241
    116591 5zo5:B (2.297) BS02 MN N/A GO:0003676 ... N/A 30666241
    116592 5zod:A (1.9) BS01 MG 3.1.-.- GO:0003677 ... P39748 30295841
    116593 5zon:A (1.94) BS01 ZN 3.1.3.15 GO:0000105 ... P95189 29752410
    116594 5zon:A (1.94) BS02 ZN 3.1.3.15 GO:0000105 ... P95189 29752410
    116595 5zon:B (1.94) BS01 ZN 3.1.3.15 GO:0000105 ... P95189 29752410
    116596 5zon:C (1.94) BS01 ZN 3.1.3.15 GO:0000105 ... P95189 29752410
    116597 5zon:C (1.94) BS02 ZN 3.1.3.15 GO:0000105 ... P95189 29752410
    116598 5zon:D (1.94) BS01 ZN 3.1.3.15 GO:0000105 ... P95189 29752410
    116599 5zoo:G (1.85) BS02 ZN 3.5.1.98 N/A P56524 30321390
    116600 5zoo:G (1.85) BS03 ZN 3.5.1.98 N/A P56524 30321390
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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