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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    116201 5zc0:B (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    116202 5zc0:C (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    116203 5zc0:C (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    116204 5zc0:D (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    116205 5zc0:D (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    116206 5zc0:E (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    116207 5zc0:E (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    116208 5zc0:F (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    116209 5zc0:F (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    116210 5zc4:A (1.906) BS01 ZN 2.3.2.27 N/A O43567 N/A
    116211 5zc4:A (1.906) BS02 ZN 2.3.2.27 N/A O43567 N/A
    116212 5zc4:D (1.906) BS01 ZN 2.3.2.27 N/A O43567 N/A
    116213 5zc4:D (1.906) BS02 ZN 2.3.2.27 N/A O43567 N/A
    116214 5zcb:A (2.5) BS01 CA N/A GO:0005975 ... N/A 29870070
    116215 5zcb:A (2.5) BS02 CA N/A GO:0005975 ... N/A 29870070
    116216 5zcc:A (1.704) BS03 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    116217 5zcc:A (1.704) BS04 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    116218 5zcd:A (1.707) BS04 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    116219 5zcd:A (1.707) BS05 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    116220 5zce:A (1.555) BS05 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    116221 5zce:A (1.555) BS06 CA ? GO:0004556 ... A0A2Z5WH92 29870070
    116222 5zcg:A (2.1) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116223 5zcg:A (2.1) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116224 5zcg:B (2.1) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116225 5zcg:B (2.1) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116226 5zch:A (2.474) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116227 5zch:A (2.474) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116228 5zch:B (2.474) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116229 5zch:B (2.474) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116230 5zcl:A (2.661) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116231 5zcl:A (2.661) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116232 5zcl:B (2.661) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116233 5zcl:B (2.661) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 31541388
    116234 5zco:A (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116235 5zco:A (1.9) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116236 5zco:F (1.9) BS01 ZN ? GO:0005740 ... P00428 30077971
    116237 5zco:N (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116238 5zco:N (1.9) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116239 5zco:S (1.9) BS01 ZN ? GO:0005740 ... P00428 30077971
    116240 5zcp:A (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116241 5zcp:A (1.65) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116242 5zcp:F (1.65) BS01 ZN ? GO:0005740 ... P00428 30077971
    116243 5zcp:N (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116244 5zcp:N (1.65) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116245 5zcp:S (1.65) BS01 ZN ? GO:0005740 ... P00428 30077971
    116246 5zcq:A (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116247 5zcq:A (1.65) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116248 5zcq:F (1.65) BS01 ZN ? GO:0005740 ... P00428 30077971
    116249 5zcq:N (1.65) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116250 5zcq:N (1.65) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116251 5zcq:S (1.65) BS01 ZN ? GO:0005740 ... P00428 30077971
    116252 5zcr:A (2.4) BS01 MG ? GO:0005975 ... Q7LYV2 30387780
    116253 5zcr:B (2.4) BS01 MG ? GO:0005975 ... Q7LYV2 30387780
    116254 5zct:H (2.05) BS02 MG 6.3.2.- GO:0003824 ... P0C0U4 29969101
    116255 5zcu:A (2.413) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 30941543
    116256 5zcu:A (2.413) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 30941543
    116257 5zcu:B (2.413) BS01 MG 3.1.3.16 GO:0004722 ... Q6L5H6 30941543
    116258 5zcu:B (2.413) BS02 MG 3.1.3.16 GO:0004722 ... Q6L5H6 30941543
    116259 5zdk:A (2.45) BS02 CS 6.1.1.18 GO:0000166 ... Q5SKU4 30248426
    116260 5zdm:A (1.38) BS01 CA 3.6.1.- GO:0016787 ... D2SNF7 30010320
    116261 5zdm:A (1.38) BS02 CA 3.6.1.- GO:0016787 ... D2SNF7 30010320
    116262 5zdn:A (2.02) BS02 MG 3.6.1.- GO:0016787 ... D2SNF7 30010320
    116263 5zdn:A (2.02) BS03 MG 3.6.1.- GO:0016787 ... D2SNF7 30010320
    116264 5zdp:A (2.71) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116265 5zdp:A (2.71) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116266 5zdp:B (2.71) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116267 5zdp:B (2.71) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116268 5zdp:C (2.71) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116269 5zdp:C (2.71) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116270 5zdp:D (2.71) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116271 5zdp:D (2.71) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116272 5zdq:A (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116273 5zdq:A (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116274 5zdq:B (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116275 5zdq:B (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116276 5zdq:C (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116277 5zdq:C (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116278 5zdq:D (2.3) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116279 5zdq:D (2.3) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116280 5zdr:A (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116281 5zdr:A (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116282 5zdr:B (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116283 5zdr:B (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116284 5zdr:C (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116285 5zdr:C (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116286 5zdr:D (2.59) BS01 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116287 5zdr:D (2.59) BS02 FE 1.-.-.- GO:0005739 ... Q26710 30910528
    116288 5zdz:A (2.8) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116289 5zdz:A (2.8) BS07 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116290 5zdz:C (2.8) BS06 CA 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116291 5zdz:C (2.8) BS07 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116292 5ze0:A (2.75) BS06 MG 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116293 5ze0:A (2.75) BS07 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116294 5ze0:C (2.75) BS06 MG 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116295 5ze0:C (2.75) BS07 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116296 5ze1:A (3.0) BS06 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116297 5ze1:A (3.0) BS07 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116298 5ze1:A (3.0) BS08 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116299 5ze1:C (3.0) BS06 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116300 5ze1:C (3.0) BS07 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116301 5ze1:C (3.0) BS08 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116302 5ze2:A (3.3) BS06 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116303 5ze2:A (3.3) BS07 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116304 5ze2:A (3.3) BS08 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116305 5ze2:C (3.3) BS06 ZN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116306 5ze2:C (3.3) BS07 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116307 5ze2:C (3.3) BS08 MN 2.3.2.27
    3.1.-.-    		 GO:0004519 ... P15919 29628308
    116308 5ze3:A (2.4) BS01 CA 1.4.3.13 GO:0005507 ... Q9Y4K0 29581294
    116309 5ze3:A (2.4) BS02 ZN 1.4.3.13 GO:0005507 ... Q9Y4K0 29581294
    116310 5ze3:B (2.4) BS01 CA 1.4.3.13 GO:0005507 ... Q9Y4K0 29581294
    116311 5ze3:B (2.4) BS02 ZN 1.4.3.13 GO:0005507 ... Q9Y4K0 29581294
    116312 5ze4:A (2.11) BS02 MG 4.2.1.9 GO:0003824 ... Q9LIR4 29995859
    116313 5ze6:B (2.5) BS02 MG 2.5.1.90 GO:0004659 ... P0AD57 30730737
    116314 5ze6:B (2.5) BS03 MG 2.5.1.90 GO:0004659 ... P0AD57 30730737
    116315 5zee:A (1.74) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116316 5zee:A (1.74) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116317 5zee:B (1.74) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116318 5zee:B (1.74) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116319 5zef:A (2.01) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116320 5zef:A (2.01) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116321 5zef:B (2.01) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116322 5zef:B (2.01) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116323 5zeh:A (2.36) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116324 5zeh:A (2.36) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116325 5zeh:B (2.36) BS02 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116326 5zeh:B (2.36) BS03 MN 3.5.3.1 GO:0000050 ... C4LSS0 31199070
    116327 5zen:A (2.75) BS03 MN 5.6.2.2 GO:0003677 ... Q02880 30082834
    116328 5zeq:A (1.9) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 29859906
    116329 5zeq:A (1.9) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 29859906
    116330 5zeq:A (1.9) BS03 ZN 3.4.17.2 GO:0004181 ... P09955 29859906
    116331 5zeq:A (1.9) BS05 ZN 3.4.17.2 GO:0004181 ... P09955 29859906
    116332 5zf0:L1 (4.2) BS05 CA ? GO:0009522 ... Q8DGB4 29610537
    116333 5zf0:L2 (4.2) BS02 CA ? GO:0009522 ... Q8DGB4 29610537
    116334 5zf0:L2 (4.2) BS07 CA ? GO:0009522 ... Q8DGB4 29610537
    116335 5zf0:L3 (4.2) BS02 CA ? GO:0009522 ... Q8DGB4 29610537
    116336 5zf0:L4 (4.2) BS05 CA ? GO:0009522 ... Q8DGB4 29610537
    116337 5zf0:L4 (4.2) BS09 CA ? GO:0009522 ... Q8DGB4 29610537
    116338 5zf0:L5 (4.2) BS03 CA ? GO:0009522 ... Q8DGB4 29610537
    116339 5zf0:L6 (4.2) BS02 CA ? GO:0009522 ... Q8DGB4 29610537
    116340 5zf0:L6 (4.2) BS08 CA ? GO:0009522 ... Q8DGB4 29610537
    116341 5zfj:A (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    116342 5zfj:A (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    116343 5zfj:B (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    116344 5zfj:B (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    116345 5zfj:C (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    116346 5zfj:C (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    116347 5zfj:D (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    116348 5zfj:D (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    116349 5zfr:A (3.1) BS01 ZN ? GO:0000166 ... Q74D28 30066435
    116350 5zfr:B (3.1) BS01 ZN ? GO:0000166 ... Q74D28 30066435
    116351 5zfr:C (3.1) BS01 ZN ? GO:0000166 ... Q74D28 30066435
    116352 5zfs:A (1.96) BS01 MN 5.1.3.- GO:0005975 ... A0A1L7NQ96 30279320
    116353 5zfs:B (1.96) BS01 MN 5.1.3.- GO:0005975 ... A0A1L7NQ96 30279320
    116354 5zfx:B (1.751) BS01 MG 5.3.1.1 GO:0004807 ... A0A074Z863 30305716
    116355 5zfx:B (1.751) BS02 MG 5.3.1.1 GO:0004807 ... A0A074Z863 30305716
    116356 5zg0:A (1.58) BS02 ZN ? GO:0015276 ... P42262 30209408
    116357 5zg0:B (1.58) BS03 ZN ? GO:0015276 ... P42262 30209408
    116358 5zg0:C (1.58) BS03 ZN ? GO:0015276 ... P42262 30209408
    116359 5zg0:D (1.58) BS03 ZN ? GO:0015276 ... P42262 30209408
    116360 5zg0:D (1.58) BS04 ZN ? GO:0015276 ... P42262 30209408
    116361 5zg0:E (1.58) BS03 ZN ? GO:0015276 ... P42262 30209408
    116362 5zg0:F (1.58) BS03 ZN ? GO:0015276 ... P42262 30209408
    116363 5zg2:A (1.25) BS03 ZN ? GO:0015276 ... P42262 30209408
    116364 5zg3:A (1.65) BS03 ZN ? GO:0015276 ... P42262 30209408
    116365 5zg3:B (1.65) BS03 ZN ? GO:0015276 ... P42262 30209408
    116366 5zg3:C (1.65) BS02 ZN ? GO:0015276 ... P42262 30209408
    116367 5zg3:D (1.65) BS03 ZN ? GO:0015276 ... P42262 30209408
    116368 5zg3:D (1.65) BS04 ZN ? GO:0015276 ... P42262 30209408
    116369 5zg3:E (1.65) BS01 ZN ? GO:0015276 ... P42262 30209408
    116370 5zg3:F (1.65) BS03 ZN ? GO:0015276 ... P42262 30209408
    116371 5zgc:A (2.9) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    116372 5zgc:B (2.9) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    116373 5zgc:C (2.9) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    116374 5zgc:D (2.9) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    116375 5zgc:E (2.9) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    116376 5zge:A (1.0) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116377 5zge:A (1.0) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116378 5zge:B (1.0) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116379 5zge:B (1.0) BS03 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116380 5zgf:A (1.2) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116381 5zgf:A (1.2) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116382 5zgi:A (0.98) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116383 5zgi:A (0.98) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116384 5zgm:A (1.399) BS01 CA ? GO:0005509 ... P30563 29969026
    116385 5zgm:A (1.399) BS02 CA ? GO:0005509 ... P30563 29969026
    116386 5zgm:B (1.399) BS01 CA ? GO:0005509 ... P30563 29969026
    116387 5zgm:B (1.399) BS02 CA ? GO:0005509 ... P30563 29969026
    116388 5zgp:A (1.15) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116389 5zgp:A (1.15) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116390 5zgp:B (1.15) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116391 5zgp:B (1.15) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116392 5zgq:A (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116393 5zgq:A (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116394 5zgq:B (1.5) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116395 5zgq:B (1.5) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116396 5zgr:A (1.15) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116397 5zgr:A (1.15) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116398 5zgr:B (1.15) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116399 5zgr:B (1.15) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 30150473
    116400 5zgs:A (2.2) BS02 CA 1.11.1.7 GO:0004601 ... P80025 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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