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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    116001 5z4m:A (1.74) BS03 MG 2.7.7.52 N/A Q9VI58 30407553
    116002 5z4p:A (2.5) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    116003 5z4p:B (2.5) BS02 MG ? GO:0000226 ... Q6B856 N/A
    116004 5z4p:B (2.5) BS03 CA ? GO:0000226 ... Q6B856 N/A
    116005 5z4u:A (3.18) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    116006 5z4u:C (3.18) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    116007 5z53:A (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    116008 5z53:A (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    116009 5z53:B (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    116010 5z53:B (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    116011 5z53:C (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    116012 5z53:C (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    116013 5z53:D (1.86) BS01 CA ? N/A A0A1P8VSI6 30222239
    116014 5z53:D (1.86) BS02 CA ? N/A A0A1P8VSI6 30222239
    116015 5z54:A (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    116016 5z54:A (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    116017 5z54:B (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    116018 5z54:B (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    116019 5z54:C (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    116020 5z54:C (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    116021 5z54:D (2.16) BS01 CA ? N/A A0A076NBW8 30222239
    116022 5z54:D (2.16) BS02 CA ? N/A A0A076NBW8 30222239
    116023 5z56:6 (5.1) BS01 ZN ? GO:0000398 ... Q7RTV0 29360106
    116024 5z56:6 (5.1) BS02 ZN ? GO:0000398 ... Q7RTV0 29360106
    116025 5z56:6 (5.1) BS03 ZN ? GO:0000398 ... Q7RTV0 29360106
    116026 5z56:M (5.1) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 29360106
    116027 5z56:N (5.1) BS02 ZN ? GO:0000398 ... P41223 29360106
    116028 5z56:N (5.1) BS03 ZN ? GO:0000398 ... P41223 29360106
    116029 5z56:N (5.1) BS04 ZN ? GO:0000398 ... P41223 29360106
    116030 5z56:O (5.1) BS03 ZN ? GO:0000398 ... Q9NW64 29360106
    116031 5z56:O (5.1) BS04 ZN ? GO:0000398 ... Q9NW64 29360106
    116032 5z56:O (5.1) BS05 ZN ? GO:0000398 ... Q9NW64 29360106
    116033 5z56:v (5.1) BS02 ZN ? GO:0000245 ... Q15428 29360106
    116034 5z57:6 (6.5) BS01 ZN ? GO:0000398 ... Q7RTV0 29360106
    116035 5z57:6 (6.5) BS02 ZN ? GO:0000398 ... Q7RTV0 29360106
    116036 5z57:6 (6.5) BS03 ZN ? GO:0000398 ... Q7RTV0 29360106
    116037 5z57:N (6.5) BS02 ZN ? GO:0000398 ... P41223 29360106
    116038 5z57:N (6.5) BS03 ZN ? GO:0000398 ... P41223 29360106
    116039 5z57:N (6.5) BS04 ZN ? GO:0000398 ... P41223 29360106
    116040 5z57:O (6.5) BS03 ZN ? GO:0000398 ... Q9NW64 29360106
    116041 5z57:O (6.5) BS04 ZN ? GO:0000398 ... Q9NW64 29360106
    116042 5z57:O (6.5) BS05 ZN ? GO:0000398 ... Q9NW64 29360106
    116043 5z57:v (6.5) BS02 ZN ? GO:0000245 ... Q15428 29360106
    116044 5z58:6 (4.9) BS01 ZN ? GO:0000398 ... Q7RTV0 29360106
    116045 5z58:6 (4.9) BS02 ZN ? GO:0000398 ... Q7RTV0 29360106
    116046 5z58:6 (4.9) BS03 ZN ? GO:0000398 ... Q7RTV0 29360106
    116047 5z58:M (4.9) BS02 ZN 2.3.2.27 GO:0000398 ... O15541 29360106
    116048 5z5d:A (1.7) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    116049 5z5f:A (2.1) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    116050 5z5h:A (1.9) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    116051 5z5i:A (1.7) BS01 CA 3.2.1.37 GO:0004553 ... Q2I2N4 29698436
    116052 5z5l:A (2.3) BS01 MN ? GO:0030246 ... P02866 N/A
    116053 5z5l:A (2.3) BS02 CA ? GO:0030246 ... P02866 N/A
    116054 5z5l:B (2.3) BS01 MN ? GO:0030246 ... P02866 N/A
    116055 5z5l:B (2.3) BS02 CA ? GO:0030246 ... P02866 N/A
    116056 5z5l:C (2.3) BS01 MN ? GO:0030246 ... P02866 N/A
    116057 5z5l:C (2.3) BS02 CA ? GO:0030246 ... P02866 N/A
    116058 5z5l:D (2.3) BS01 CA ? GO:0030246 ... P02866 N/A
    116059 5z5n:A (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    116060 5z5n:A (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    116061 5z5n:B (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    116062 5z5n:B (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    116063 5z5n:C (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    116064 5z5n:C (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    116065 5z5n:D (2.04) BS01 CA ? GO:0030246 ... P02866 N/A
    116066 5z5n:D (2.04) BS02 MN ? GO:0030246 ... P02866 N/A
    116067 5z5p:A (1.4) BS01 MN ? GO:0030246 ... P02866 N/A
    116068 5z5p:A (1.4) BS02 CA ? GO:0030246 ... P02866 N/A
    116069 5z5p:B (1.4) BS02 CA ? GO:0030246 ... P02866 N/A
    116070 5z5p:B (1.4) BS03 MN ? GO:0030246 ... P02866 N/A
    116071 5z5y:A (1.89) BS02 MN ? GO:0030246 ... P02866 N/A
    116072 5z5y:A (1.89) BS03 CA ? GO:0030246 ... P02866 N/A
    116073 5z5y:B (1.89) BS02 MN ? GO:0030246 ... P02866 N/A
    116074 5z5y:B (1.89) BS03 CA ? GO:0030246 ... P02866 N/A
    116075 5z62:A (3.6) BS01 CU 7.1.1.9 GO:0001666 ... P00395 30030519
    116076 5z62:A (3.6) BS02 MG 7.1.1.9 GO:0001666 ... P00395 30030519
    116077 5z62:B (3.6) BS02 CU 7.1.1.9 GO:0001666 ... P00403 30030519
    116078 5z62:B (3.6) BS03 CU 7.1.1.9 GO:0001666 ... P00403 30030519
    116079 5z65:A (2.65) BS01 ZN 3.4.11.2 GO:0001525 ... P15145 29802920
    116080 5z68:B (3.0) BS03 MG ? GO:0000731 ... Q8RDL3 29391496
    116081 5z6e:A (1.864) BS01 CA ? GO:0016020 ... Q7RY31 30216631
    116082 5z6o:A (1.7) BS01 CA 3.4.21.64 GO:0004252 ... A0A2R2JFW8 9184139
    116083 5z6w:A (3.2) BS03 MN 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    116084 5z6w:A (3.2) BS04 MN 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    116085 5z7w:A (1.657) BS01 MG ? GO:0046872 ... A0A0M4AV81 30258184
    116086 5z7w:B (1.657) BS01 MG ? GO:0046872 ... A0A0M4AV81 30258184
    116087 5z7x:A (2.055) BS01 MG ? GO:0080167 ... A0A0M4AMQ0 30258184
    116088 5z7y:A (1.9) BS01 MG ? GO:0046872 ... A0A0M3PNA2 30258184
    116089 5z84:A (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116090 5z84:A (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116091 5z84:F (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    116092 5z84:N (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116093 5z84:N (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116094 5z84:S (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    116095 5z85:A (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116096 5z85:A (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116097 5z85:F (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    116098 5z85:N (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116099 5z85:N (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116100 5z85:S (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    116101 5z86:A (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116102 5z86:A (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116103 5z86:F (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    116104 5z86:N (1.85) BS03 CU 7.1.1.9 GO:0004129 ... P00396 30077971
    116105 5z86:N (1.85) BS04 MG 7.1.1.9 GO:0004129 ... P00396 30077971
    116106 5z86:S (1.85) BS01 ZN ? GO:0005740 ... P00428 30077971
    116107 5z87:A (2.3) BS01 MG ? GO:0004553 ... A0A0H0XV02 N/A
    116108 5z87:A (2.3) BS02 MG ? GO:0004553 ... A0A0H0XV02 N/A
    116109 5z87:B (2.3) BS01 MG ? GO:0004553 ... A0A0H0XV02 N/A
    116110 5z87:B (2.3) BS02 MG ? GO:0004553 ... A0A0H0XV02 N/A
    116111 5z8l:A (2.005) BS02 ZN ? GO:0000976 ... F4JL28 30082787
    116112 5z8l:A (2.005) BS03 ZN ? GO:0000976 ... F4JL28 30082787
    116113 5z8n:A (3.1) BS02 ZN ? GO:0003682 ... F4JL28 30082787
    116114 5z8n:A (3.1) BS03 ZN ? GO:0003682 ... F4JL28 30082787
    116115 5z8n:B (3.1) BS02 ZN ? GO:0003682 ... F4JL28 30082787
    116116 5z8n:B (3.1) BS03 ZN ? GO:0003682 ... F4JL28 30082787
    116117 5z8n:C (3.1) BS02 ZN ? GO:0003682 ... F4JL28 30082787
    116118 5z8n:C (3.1) BS03 ZN ? GO:0003682 ... F4JL28 30082787
    116119 5z8s:A (1.973) BS01 AU 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    116120 5z8u:A (1.9) BS01 MG 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    116121 5z8u:B (1.9) BS01 MG 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    116122 5z8y:A (3.4) BS01 ZN ? N/A O43300 30262834
    116123 5z8y:B (3.4) BS01 CA ? N/A P58400 30262834
    116124 5z8y:C (3.4) BS01 ZN ? N/A O43300 30262834
    116125 5z8y:D (3.4) BS01 CA ? N/A P58400 30262834
    116126 5z8y:E (3.4) BS01 ZN ? N/A O43300 30262834
    116127 5z8y:F (3.4) BS01 CA ? N/A P58400 30262834
    116128 5z8y:G (3.4) BS01 ZN ? N/A O43300 30262834
    116129 5z8y:H (3.4) BS01 CA ? N/A P58400 30262834
    116130 5z91:A (3.004) BS01 AU 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    116131 5z91:A (3.004) BS02 MG 1.16.3.1 GO:0006826 ... Q8N4E7 31277668
    116132 5z93:A (1.945) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    116133 5z94:A (1.899) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    116134 5z94:B (1.899) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    116135 5z98:A (2.2) BS01 ZN 3.5.4.38 GO:0003824 ... B7T0U6 30060196
    116136 5z98:B (2.2) BS03 ZN 3.5.4.38 GO:0003824 ... B7T0U6 30060196
    116137 5z9x:A (2.8) BS02 MG 3.1.-.- GO:0000175 ... A3KPE8 30181559
    116138 5zac:A (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    116139 5zac:A (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    116140 5zac:B (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    116141 5zac:B (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    116142 5zac:C (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    116143 5zac:C (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    116144 5zac:D (2.59) BS01 MN ? GO:0030246 ... P02866 N/A
    116145 5zac:D (2.59) BS02 CA ? GO:0030246 ... P02866 N/A
    116146 5zac:D (2.59) BS03 CA ? GO:0030246 ... P02866 N/A
    116147 5zax:A (2.36) BS02 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116148 5zax:A (2.36) BS03 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116149 5zax:A (2.36) BS04 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116150 5zax:B (2.36) BS02 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116151 5zax:B (2.36) BS03 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116152 5zax:B (2.36) BS04 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116153 5zb0:A (1.19) BS03 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116154 5zb0:A (1.19) BS04 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116155 5zb0:A (1.19) BS05 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116156 5zb0:B (1.19) BS03 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116157 5zb0:B (1.19) BS04 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116158 5zb0:B (1.19) BS05 MG 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116159 5zb1:A (3.061) BS01 ZN ? GO:0006355 ... Q2HR75 30096191
    116160 5zb3:A (3.506) BS01 ZN ? GO:0006355 ... Q2HR75 30096191
    116161 5zb3:B (3.506) BS01 ZN ? GO:0006355 ... Q2HR75 30096191
    116162 5zb4:A (1.92) BS02 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116163 5zb4:A (1.92) BS03 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116164 5zb4:A (1.92) BS04 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116165 5zb4:A (1.92) BS05 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116166 5zb4:A (1.92) BS06 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116167 5zb4:A (1.92) BS07 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116168 5zb4:B (1.92) BS02 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116169 5zb4:B (1.92) BS03 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116170 5zb4:B (1.92) BS04 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116171 5zb4:B (1.92) BS05 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116172 5zb4:B (1.92) BS06 CA 2.7.4.9 GO:0004798 ... Q5SHX3 30447376
    116173 5zb8:A (2.5) BS01 ZN ? GO:0046872 ... Q8U0N5 29660024
    116174 5zb8:A (2.5) BS02 ZN ? GO:0046872 ... Q8U0N5 29660024
    116175 5zb8:A (2.5) BS03 ZN ? GO:0046872 ... Q8U0N5 29660024
    116176 5zb8:B (2.5) BS01 ZN ? GO:0046872 ... Q8U0N5 29660024
    116177 5zb8:B (2.5) BS02 ZN ? GO:0046872 ... Q8U0N5 29660024
    116178 5zb8:B (2.5) BS03 ZN ? GO:0046872 ... Q8U0N5 29660024
    116179 5zb8:C (2.5) BS01 ZN ? GO:0046872 ... Q8U0N5 29660024
    116180 5zb8:C (2.5) BS02 ZN ? GO:0046872 ... Q8U0N5 29660024
    116181 5zb8:C (2.5) BS03 ZN ? GO:0046872 ... Q8U0N5 29660024
    116182 5zb8:D (2.5) BS01 ZN ? GO:0046872 ... Q8U0N5 29660024
    116183 5zb8:D (2.5) BS02 ZN ? GO:0046872 ... Q8U0N5 29660024
    116184 5zb8:D (2.5) BS03 ZN ? GO:0046872 ... Q8U0N5 29660024
    116185 5zb8:E (2.5) BS01 ZN ? GO:0046872 ... Q8U0N5 29660024
    116186 5zb8:E (2.5) BS02 ZN ? GO:0046872 ... Q8U0N5 29660024
    116187 5zb8:E (2.5) BS03 ZN ? GO:0046872 ... Q8U0N5 29660024
    116188 5zbe:A (1.6) BS01 FE2 N/A N/A N/A 30742895
    116189 5zbf:A (1.6) BS02 FE2 N/A N/A N/A 30742895
    116190 5zbr:B (2.0) BS02 MG ? GO:0003777 ... A0A0G2K8Z9 29752968
    116191 5zbr:C (2.0) BS02 MG ? GO:0003777 ... A0A0G2K8Z9 29752968
    116192 5zbs:A (2.203) BS02 MG ? GO:0003777 ... A0A0G2K8Z9 29752968
    116193 5zbs:C (2.203) BS02 MG ? GO:0003777 ... A0A0G2K8Z9 29752968
    116194 5zbu:A (3.2) BS01 ZN 2.3.2.27 N/A O43567 N/A
    116195 5zbu:A (3.2) BS02 ZN 2.3.2.27 N/A O43567 N/A
    116196 5zbu:D (3.2) BS01 ZN 2.3.2.27 N/A O43567 N/A
    116197 5zbu:D (3.2) BS02 ZN 2.3.2.27 N/A O43567 N/A
    116198 5zc0:A (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    116199 5zc0:A (2.75) BS02 CA ? GO:0005509 ... Q5PPM0 29807191
    116200 5zc0:B (2.75) BS01 CA ? GO:0005509 ... Q5PPM0 29807191
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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