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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    115801 5yvt:A (2.4) BS01 MG 1.1.1.41 GO:0000287 ... P50213 29453450
    115802 5yvx:A (1.591) BS02 ZN 2.1.1.- GO:0008270 ... Q2LAE1 29496997
    115803 5yvz:A (1.6) BS01 FE ? GO:0046872 ... B3DUR4 30092253
    115804 5yw0:A (1.49) BS01 FE ? GO:0046872 ... B3DUR4 30092253
    115805 5yw3:A (1.19) BS01 CU ? GO:0005507 ... P19567 N/A
    115806 5yw3:B (1.19) BS01 CU ? GO:0005507 ... P19567 N/A
    115807 5yw3:C (1.19) BS01 CU ? GO:0005507 ... P19567 N/A
    115808 5yw3:D (1.19) BS01 CU ? GO:0005507 ... P19567 N/A
    115809 5ywb:B (5.2) BS03 MG ? GO:0005267 ... Q09427 29594720
    115810 5ywb:D (5.2) BS03 MG ? GO:0005267 ... Q09427 29594720
    115811 5ywb:F (5.2) BS03 MG ? GO:0005267 ... Q09427 29594720
    115812 5ywb:H (5.2) BS03 MG ? GO:0005267 ... Q09427 29594720
    115813 5ywc:B (4.3) BS03 MG ? GO:0001508 ... A0A1U7R319 29594720
    115814 5ywc:D (4.3) BS03 MG ? GO:0001508 ... A0A1U7R319 29594720
    115815 5ywc:F (4.3) BS03 MG ? GO:0001508 ... A0A1U7R319 29594720
    115816 5ywc:H (4.3) BS03 MG ? GO:0001508 ... A0A1U7R319 29594720
    115817 5ywd:B (4.2) BS03 MG ? GO:0001508 ... A0A1U7R319 29594720
    115818 5ywg:A (2.603) BS01 CO 1.13.11.27 GO:0003868 ... P93836 30632699
    115819 5ywg:B (2.603) BS01 CO 1.13.11.27 GO:0003868 ... P93836 30632699
    115820 5ywh:A (2.72) BS01 FE 1.13.11.27 GO:0003868 ... P93836 N/A
    115821 5ywh:B (2.72) BS01 FE 1.13.11.27 GO:0003868 ... P93836 N/A
    115822 5ywi:A (2.58) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    115823 5ywk:A (2.804) BS01 CO 1.13.11.27 GO:0003868 ... P93836 33395281
    115824 5ywk:B (2.804) BS01 CO 1.13.11.27 GO:0003868 ... P93836 33395281
    115825 5ywr:B (1.47) BS01 ZN 2.3.2.27 N/A Q8ND25 29626159
    115826 5ywr:B (1.47) BS02 ZN 2.3.2.27 N/A Q8ND25 29626159
    115827 5ywr:B (1.47) BS03 ZN 2.3.2.27 N/A Q8ND25 29626159
    115828 5yws:A (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115829 5yws:B (2.0) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115830 5ywt:A (1.7) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115831 5ywt:A (1.7) BS03 CO 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115832 5ywt:B (1.7) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115833 5ywt:B (1.7) BS03 CO 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115834 5ywu:A (3.4) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115835 5ywu:B (3.4) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115836 5ywu:B (3.4) BS03 MG 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115837 5ywv:A (2.3) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115838 5ywv:B (2.3) BS02 MG 3.1.11.2 GO:0003676 ... Q91XB0 29734329
    115839 5yxc:A (1.763) BS01 ZN ? GO:0008270 ... P76344 29596824
    115840 5yxc:B (1.763) BS01 ZN ? GO:0008270 ... P76344 29596824
    115841 5yxf:A (1.61) BS01 CO 3.4.11.18 GO:0004177 ... A5U6L5 N/A
    115842 5yxf:A (1.61) BS02 CO 3.4.11.18 GO:0004177 ... A5U6L5 N/A
    115843 5yxy:D (3.299) BS01 ZN ? GO:0008270 ... Q5JIH3 29915046
    115844 5yxy:E (3.299) BS01 ZN ? GO:0008270 ... Q5JIH3 29915046
    115845 5yxy:F (3.299) BS01 ZN ? GO:0008270 ... Q5JIH3 29915046
    115846 5yy0:B (3.243) BS01 ZN ? GO:0008270 ... Q5JIH3 29915046
    115847 5yy2:A (2.91) BS01 ZN 4.1.99.27 GO:0003674 ... C8VJQ3 30026518
    115848 5yy6:A (2.401) BS01 CO 1.13.11.27 GO:0003868 ... P93836 31549053
    115849 5yy7:A (3.298) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    115850 5yy7:B (3.298) BS01 CO 1.13.11.27 GO:0003868 ... P93836 N/A
    115851 5yye:A (2.325) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115852 5yye:A (2.325) BS07 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115853 5yye:F (2.325) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115854 5yye:F (2.325) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115855 5yz3:A (2.545) BS02 CA 3.6.5.- GO:0000226 ... P81947 30135190
    115856 5yz3:C (2.545) BS02 CA 3.6.5.- GO:0000226 ... P81947 30135190
    115857 5yz4:A (2.135) BS01 CA ? GO:0032040 ... O13610 29641590
    115858 5yz4:A (2.135) BS02 ZN ? GO:0032040 ... O13610 29641590
    115859 5yz9:A (-1.00) BS01 ZN 2.1.1.348 N/A Q86U44 29542011
    115860 5yz9:A (-1.00) BS02 ZN 2.1.1.348 N/A Q86U44 29542011
    115861 5yzg:N (4.1) BS02 ZN ? GO:0000398 ... P41223 29301961
    115862 5yzg:N (4.1) BS03 ZN ? GO:0000398 ... P41223 29301961
    115863 5yzg:N (4.1) BS04 ZN ? GO:0000398 ... P41223 29301961
    115864 5yzg:O (4.1) BS03 ZN ? GO:0000398 ... Q9NW64 29301961
    115865 5yzg:O (4.1) BS04 ZN ? GO:0000398 ... Q9NW64 29301961
    115866 5yzg:O (4.1) BS05 ZN ? GO:0000398 ... Q9NW64 29301961
    115867 5yzg:Y (4.1) BS04 ZN ? GO:0000349 ... Q9BW85 29301961
    115868 5yzi:A (2.519) BS01 CD 1.1.1.42 GO:0000287 ... O88844 29923039
    115869 5yzi:B (2.519) BS01 CD 1.1.1.42 GO:0000287 ... O88844 29923039
    115870 5yzx:A (3.2) BS02 CA 6.1.1.6 GO:0000049 ... P0A8N5 N/A
    115871 5yzx:A (3.2) BS03 CA 6.1.1.6 GO:0000049 ... P0A8N5 N/A
    115872 5yzx:B (3.2) BS02 CA 6.1.1.6 GO:0000049 ... P0A8N5 N/A
    115873 5yzx:C (3.2) BS02 CA 6.1.1.6 GO:0000049 ... P0A8N5 N/A
    115874 5z01:A (1.75) BS01 MG 3.4.17.13 GO:0004180 ... P76008 29601819
    115875 5z06:A (2.1) BS01 CA 3.2.1.214 GO:0016798 ... A6LGF6 29763309
    115876 5z06:B (2.1) BS01 CA 3.2.1.214 GO:0016798 ... A6LGF6 29763309
    115877 5z0c:A (1.54) BS01 ZN ? GO:0008270 ... J7JYU1 29304481
    115878 5z0c:A (1.54) BS02 ZN ? GO:0008270 ... J7JYU1 29304481
    115879 5z0d:A (1.16) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115880 5z0d:A (1.16) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115881 5z0d:B (1.16) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    115882 5z0e:A (1.16) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115883 5z0e:A (1.16) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115884 5z0e:B (1.16) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    115885 5z0f:A (1.16) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115886 5z0f:A (1.16) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115887 5z0f:A (1.16) BS03 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115888 5z0f:B (1.16) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    115889 5z0g:A (1.32) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115890 5z0g:A (1.32) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115891 5z0h:A (1.18) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115892 5z0h:A (1.18) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115893 5z0h:B (1.18) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    115894 5z0i:A (1.32) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115895 5z0i:A (1.32) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115896 5z0i:B (1.32) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    115897 5z0j:A (1.35) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115898 5z0j:A (1.35) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115899 5z0j:B (1.35) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    115900 5z0k:A (1.28) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115901 5z0k:A (1.28) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115902 5z0k:B (1.28) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    115903 5z0l:A (1.17) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115904 5z0l:A (1.17) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115905 5z0l:B (1.17) BS01 CU ? GO:0005507 ... Q83WS1 N/A
    115906 5z0m:A (1.7) BS01 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115907 5z0m:A (1.7) BS02 CU 1.14.18.1 GO:0016491 ... Q83WS2 N/A
    115908 5z0t:A (1.5) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    115909 5z0t:A (1.5) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    115910 5z0t:A (1.5) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    115911 5z0t:B (1.5) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    115912 5z0t:B (1.5) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    115913 5z0t:B (1.5) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    115914 5z0u:A (1.37) BS01 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    115915 5z0u:A (1.37) BS02 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    115916 5z0u:A (1.37) BS03 CA 3.2.1.135 GO:0004553 ... Q60053 N/A
    115917 5z0x:A (1.46) BS01 CU ? GO:0005507 ... P19567 N/A
    115918 5z0x:B (1.46) BS01 CU ? GO:0005507 ... P19567 N/A
    115919 5z16:A (3.0) BS01 MG 1.1.1.42 GO:0004450 ... V5VCI0 N/A
    115920 5z16:B (3.0) BS01 MG 1.1.1.42 GO:0004450 ... V5VCI0 N/A
    115921 5z1q:A (2.3) BS01 CA ? GO:0005509 ... Q9XZV2 29607555
    115922 5z1q:B (2.3) BS01 CA ? GO:0005509 ... Q9XZV2 29607555
    115923 5z1q:B (2.3) BS02 CA ? GO:0005509 ... Q9XZV2 29607555
    115924 5z1q:C (2.3) BS01 CA ? GO:0005509 ... Q9XZV2 29607555
    115925 5z1x:A (1.38) BS01 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    115926 5z1x:A (1.38) BS02 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    115927 5z1x:A (1.38) BS03 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    115928 5z1x:A (1.38) BS04 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    115929 5z1x:B (1.38) BS01 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    115930 5z1x:B (1.38) BS02 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    115931 5z1x:B (1.38) BS03 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    115932 5z1x:B (1.38) BS04 CU 1.10.3.2 GO:0005507 ... A0A3F2YLU5 30087829
    115933 5z22:A (1.5) BS01 CU N/A GO:0005507 ... N/A 31278318
    115934 5z22:A (1.5) BS02 CU N/A GO:0005507 ... N/A 31278318
    115935 5z22:A (1.5) BS03 CU N/A GO:0005507 ... N/A 31278318
    115936 5z22:A (1.5) BS04 CU N/A GO:0005507 ... N/A 31278318
    115937 5z28:A (2.245) BS01 ZN ? N/A Q5CCK4 N/A
    115938 5z28:A (2.245) BS02 ZN ? N/A Q5CCK4 N/A
    115939 5z28:A (2.245) BS03 ZN ? N/A Q5CCK4 N/A
    115940 5z28:B (2.245) BS01 ZN ? N/A Q5CCK4 N/A
    115941 5z28:B (2.245) BS02 ZN ? N/A Q5CCK4 N/A
    115942 5z28:B (2.245) BS03 ZN ? N/A Q5CCK4 N/A
    115943 5z2k:A (1.8) BS01 MN ? GO:0007155 ... C6XF58 30125692
    115944 5z2m:A (2.142) BS01 MG 3.6.5.2 GO:0003924 ... P51150 30012887
    115945 5z2p:A (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    115946 5z2p:B (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    115947 5z2p:C (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    115948 5z2p:D (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    115949 5z2p:E (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    115950 5z2p:F (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    115951 5z2p:G (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    115952 5z2p:H (2.3) BS03 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    115953 5z2r:A (2.3) BS02 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115954 5z2r:B (2.3) BS03 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115955 5z2r:C (2.3) BS02 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115956 5z2r:D (2.3) BS03 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115957 5z2r:E (2.3) BS01 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115958 5z2r:F (2.3) BS03 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115959 5z2r:G (2.3) BS02 MN 2.2.1.9 GO:0000287 ... P17109 30341164
    115960 5z2r:H (2.3) BS03 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115961 5z2u:A (2.35) BS02 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115962 5z2u:B (2.35) BS02 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115963 5z2u:C (2.35) BS02 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115964 5z2u:D (2.35) BS03 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115965 5z2u:E (2.35) BS02 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115966 5z2u:F (2.35) BS03 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115967 5z2u:G (2.35) BS03 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115968 5z2u:H (2.35) BS03 MG 2.2.1.9 GO:0000287 ... P17109 30341164
    115969 5z2v:A (2.2) BS01 ZN ? GO:0003677 ... Q9I3H9 29633970
    115970 5z2v:B (2.2) BS01 ZN ? GO:0003677 ... Q9I3H9 29633970
    115971 5z2w:A (3.0) BS01 MG ? GO:0090529 ... P06136 30584256
    115972 5z34:A (2.399) BS01 ZN N/A GO:0005975 ... N/A N/A
    115973 5z3n:A (1.91) BS03 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115974 5z3n:A (1.91) BS04 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115975 5z3o:O (3.62) BS04 MG 3.6.4.- GO:0005524 ... P22082 30867599
    115976 5z3q:A (2.545) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... P03300 30231078
    115977 5z3q:B (2.545) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... P03300 30231078
    115978 5z3q:C (2.545) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... P03300 30231078
    115979 5z3q:D (2.545) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... P03300 30231078
    115980 5z3q:E (2.545) BS01 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15    		 GO:0003723 ... P03300 30231078
    115981 5z3u:O (4.31) BS03 MG 3.6.4.- GO:0005524 ... P22082 30867599
    115982 5z41:A (1.7) BS01 ZN ? GO:0005524 ... O67518 29645090
    115983 5z41:A (1.7) BS02 MG ? GO:0005524 ... O67518 29645090
    115984 5z42:A (1.3) BS01 ZN ? GO:0005524 ... O67518 29645090
    115985 5z42:A (1.3) BS02 ZN ? GO:0005524 ... O67518 29645090
    115986 5z42:A (1.3) BS03 ZN ? GO:0005524 ... O67518 29645090
    115987 5z43:A (2.361) BS01 MG ? GO:0004659 ... V5TDZ4 29677386
    115988 5z43:B (2.361) BS01 MG ? GO:0004659 ... V5TDZ4 29677386
    115989 5z44:A (2.458) BS02 MG ? GO:0004659 ... V5TDZ4 29677386
    115990 5z44:B (2.458) BS02 MG ? GO:0004659 ... V5TDZ4 29677386
    115991 5z45:A (2.601) BS02 MG ? GO:0004659 ... V5TDZ4 29677386
    115992 5z45:B (2.601) BS03 MG ? GO:0004659 ... V5TDZ4 29677386
    115993 5z46:A (1.999) BS01 MG ? GO:0004659 ... V5TDZ4 29677386
    115994 5z46:A (1.999) BS02 MG ? GO:0004659 ... V5TDZ4 29677386
    115995 5z46:B (1.999) BS02 MG ? GO:0004659 ... V5TDZ4 29677386
    115996 5z46:B (1.999) BS03 MG ? GO:0004659 ... V5TDZ4 29677386
    115997 5z4g:A (1.5) BS01 ZN ? GO:0046872 ... A0A1D1UN89 29493034
    115998 5z4g:A (1.5) BS02 ZN ? GO:0046872 ... A0A1D1UN89 29493034
    115999 5z4g:B (1.5) BS01 ZN ? GO:0046872 ... A0A1D1UN89 29493034
    116000 5z4g:B (1.5) BS02 ZN ? GO:0046872 ... A0A1D1UN89 29493034
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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