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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    115601 5yrv:A (1.55) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    115602 5yrv:D (1.55) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    115603 5yrv:G (1.55) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    115604 5yrv:J (1.55) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    115605 5yrx:A (1.9) BS01 CD ? GO:0003677 ... P9WNR9 29154992
    115606 5ys1:A (1.49) BS01 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    115607 5ys1:A (1.49) BS02 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    115608 5ys1:A (1.49) BS03 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    115609 5ys5:A (2.2) BS01 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    115610 5ys5:A (2.2) BS02 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    115611 5ys5:A (2.2) BS03 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    115612 5ys5:A (2.2) BS04 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    115613 5ys5:A (2.2) BS05 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    115614 5ys5:A (2.2) BS06 CU 1.16.3.4 GO:0005507 ... P36649 30250139
    115615 5ysb:A (2.2) BS01 ZN ? GO:0015768 ... Q92AS8 29678880
    115616 5ysb:A (2.2) BS02 ZN ? GO:0015768 ... Q92AS8 29678880
    115617 5ysb:A (2.2) BS03 ZN ? GO:0015768 ... Q92AS8 29678880
    115618 5ysb:A (2.2) BS04 ZN ? GO:0015768 ... Q92AS8 29678880
    115619 5ysb:B (2.2) BS01 ZN ? GO:0015768 ... Q92AS8 29678880
    115620 5ysb:B (2.2) BS02 ZN ? GO:0015768 ... Q92AS8 29678880
    115621 5ysb:B (2.2) BS03 ZN ? GO:0015768 ... Q92AS8 29678880
    115622 5ysd:A (2.1) BS04 MG ? GO:0015768 ... Q92AS8 29678880
    115623 5yse:A (1.6) BS04 MG ? GO:0015768 ... Q92AS8 29678880
    115624 5ysf:A (1.9) BS05 MG ? GO:0015768 ... Q92AS8 29678880
    115625 5ysg:A (2.0) BS01 CU ? GO:0005507 ... P19567 N/A
    115626 5ysg:B (2.0) BS01 CU ? GO:0005507 ... P19567 N/A
    115627 5ysg:C (2.0) BS01 CU ? GO:0005507 ... P19567 N/A
    115628 5ysg:D (2.0) BS01 CU ? GO:0005507 ... P19567 N/A
    115629 5ysh:A (1.9) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    115630 5ysh:D (1.9) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    115631 5ysh:G (1.9) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    115632 5ysh:J (1.9) BS01 CA 4.2.1.28 GO:0003824 ... Q59470 29797764
    115633 5yst:A (2.04) BS02 MG 3.6.5.- GO:0000054 ... P62826 N/A
    115634 5ysu:A (2.3) BS02 MG 3.6.5.- GO:0000054 ... P62826 N/A
    115635 5yt3:A (2.9) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 N/A
    115636 5yt3:C (2.9) BS02 MG 2.7.12.2 GO:0004672 ... Q02750 N/A
    115637 5yt6:B (1.501) BS01 ZN ? N/A Q86VP1 29940186
    115638 5yt6:D (1.501) BS01 ZN ? N/A Q86VP1 29940186
    115639 5yt6:F (1.501) BS01 ZN ? N/A Q86VP1 29940186
    115640 5yt6:H (1.501) BS01 ZN ? N/A Q86VP1 29940186
    115641 5yt7:A (1.66) BS01 CU ? GO:0005507 ... P00282 N/A
    115642 5yt7:B (1.66) BS01 CU ? GO:0005507 ... P00282 N/A
    115643 5yt7:B (1.66) BS02 CA ? GO:0005507 ... P00282 N/A
    115644 5yt7:C (1.66) BS01 CU ? GO:0005507 ... P00282 N/A
    115645 5yt7:D (1.66) BS01 CU ? GO:0005507 ... P00282 N/A
    115646 5ytb:A (2.3) BS02 MG 3.6.5.- GO:0000054 ... P62826 N/A
    115647 5ytc:A (2.28) BS04 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115648 5ytd:A (2.0) BS04 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115649 5ytd:A (2.0) BS05 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115650 5yte:A (2.21) BS04 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115651 5yte:A (2.21) BS05 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115652 5ytf:A (1.98) BS03 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115653 5ytf:A (1.98) BS04 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115654 5ytg:A (2.07) BS04 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115655 5ytg:A (2.07) BS05 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115656 5yth:A (2.53) BS04 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115657 5yth:A (2.53) BS05 MG 2.7.7.7 GO:0001882 ... P19821 30407705
    115658 5ytk:A (2.7) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    115659 5ytk:B (2.7) BS01 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    115660 5ytk:C (2.7) BS01 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    115661 5ytk:D (2.7) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    115662 5ytk:E (2.7) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    115663 5ytk:F (2.7) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29198988
    115664 5ytl:A (1.401) BS01 CU N/A GO:0005507 ... N/A 30082512
    115665 5ytl:A (1.401) BS02 CU N/A GO:0005507 ... N/A 30082512
    115666 5ytl:A (1.401) BS03 CU N/A GO:0005507 ... N/A 30082512
    115667 5ytm:A (1.5) BS01 CU N/A GO:0005507 ... N/A 30082512
    115668 5ytm:A (1.5) BS02 CU N/A GO:0005507 ... N/A 30082512
    115669 5ytm:A (1.5) BS03 CU N/A GO:0005507 ... N/A 30082512
    115670 5ytn:A (1.75) BS01 CU N/A GO:0005507 ... N/A 30082512
    115671 5ytn:A (1.75) BS02 CU N/A GO:0005507 ... N/A 30082512
    115672 5ytn:A (1.75) BS03 CU N/A GO:0005507 ... N/A 30082512
    115673 5yto:A (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115674 5yto:B (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115675 5yto:C (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115676 5yto:D (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115677 5yto:E (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115678 5yto:F (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115679 5yto:G (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115680 5yto:H (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115681 5yto:I (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115682 5ytu:A (1.9) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115683 5ytu:B (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115684 5ytu:C (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115685 5ytu:D (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115686 5ytu:E (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115687 5ytu:F (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115688 5ytu:H (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115689 5ytu:I (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115690 5ytu:J (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115691 5yu6:B (2.997) BS02 MG 3.6.5.- GO:0000054 ... P62825 30100359
    115692 5yu6:D (2.997) BS02 MG 3.6.5.- GO:0000054 ... P62825 30100359
    115693 5yuf:A (1.6) BS01 ZN 2.3.2.- N/A P29590 29599493
    115694 5yuf:A (1.6) BS02 ZN 2.3.2.- N/A P29590 29599493
    115695 5yuf:B (1.6) BS01 ZN 2.3.2.- N/A P29590 29599493
    115696 5yuf:B (1.6) BS02 ZN 2.3.2.- N/A P29590 29599493
    115697 5yuf:C (1.6) BS01 ZN 2.3.2.- N/A P29590 29599493
    115698 5yuf:C (1.6) BS02 ZN 2.3.2.- N/A P29590 29599493
    115699 5yuf:D (1.6) BS01 ZN 2.3.2.- N/A P29590 29599493
    115700 5yuf:D (1.6) BS02 ZN 2.3.2.- N/A P29590 29599493
    115701 5yug:A (1.57) BS01 ZN ? N/A Q8W4L5 N/A
    115702 5yug:A (1.57) BS02 ZN ? N/A Q8W4L5 N/A
    115703 5yug:A (1.57) BS03 ZN ? N/A Q8W4L5 N/A
    115704 5yug:B (1.57) BS01 ZN ? N/A Q8W4L5 N/A
    115705 5yug:B (1.57) BS02 ZN ? N/A Q8W4L5 N/A
    115706 5yug:B (1.57) BS03 ZN ? N/A Q8W4L5 N/A
    115707 5yug:E (1.57) BS01 ZN ? N/A Q8W4L5 N/A
    115708 5yug:E (1.57) BS02 ZN ? N/A Q8W4L5 N/A
    115709 5yug:E (1.57) BS03 ZN ? N/A Q8W4L5 N/A
    115710 5yug:G (1.57) BS01 ZN ? N/A Q8W4L5 N/A
    115711 5yug:G (1.57) BS02 ZN ? N/A Q8W4L5 N/A
    115712 5yug:G (1.57) BS03 ZN ? N/A Q8W4L5 N/A
    115713 5yuh:A (1.801) BS01 ZN ? N/A Q8W4L5 N/A
    115714 5yuh:A (1.801) BS02 ZN ? N/A Q8W4L5 N/A
    115715 5yuh:A (1.801) BS03 ZN ? N/A Q8W4L5 N/A
    115716 5yui:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27114542
    115717 5yuj:A (1.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27114542
    115718 5yuk:A (1.45) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 27114542
    115719 5yul:A (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115720 5yul:B (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115721 5yul:C (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115722 5yul:D (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115723 5yul:E (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115724 5yul:F (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115725 5yul:G (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115726 5yul:H (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115727 5yul:I (1.9) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 29679384
    115728 5yum:A (2.432) BS02 CO 2.2.1.6 GO:0003984 ... P0ADF8 30887800
    115729 5yus:A (1.94) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115730 5yus:A (1.94) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115731 5yus:F (1.94) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115732 5yus:F (1.94) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115733 5yut:A (2.15) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115734 5yut:A (2.15) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115735 5yut:F (2.15) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115736 5yut:F (2.15) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115737 5yuu:A (1.892) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115738 5yuu:A (1.892) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115739 5yuu:F (1.892) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115740 5yuu:F (1.892) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115741 5yuv:A (2.06) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115742 5yuv:A (2.06) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115743 5yuv:F (2.06) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115744 5yuv:F (2.06) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115745 5yuw:A (2.124) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115746 5yuw:A (2.124) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115747 5yuw:F (2.124) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115748 5yuw:F (2.124) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115749 5yux:A (2.04) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115750 5yux:A (2.04) BS06 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115751 5yux:F (2.04) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115752 5yux:F (2.04) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115753 5yuy:A (1.74) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115754 5yuy:A (1.74) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115755 5yuy:F (1.74) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115756 5yuy:F (1.74) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115757 5yuz:A (1.83) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115758 5yuz:A (1.83) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115759 5yuz:F (1.83) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115760 5yuz:F (1.83) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115761 5yv0:A (2.09) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115762 5yv0:A (2.09) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115763 5yv0:F (2.09) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115764 5yv0:F (2.09) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115765 5yv1:A (2.09) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115766 5yv1:A (2.09) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115767 5yv1:F (2.09) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115768 5yv1:F (2.09) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115769 5yv2:A (1.9) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115770 5yv2:A (1.9) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115771 5yv2:F (1.9) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115772 5yv2:F (1.9) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115773 5yv3:A (2.03) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115774 5yv3:A (2.03) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115775 5yv3:F (2.03) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115776 5yv3:F (2.03) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    115777 5yv5:A (2.1) BS04 MG ? GO:0005524 ... I6V0C7 30010948
    115778 5yv5:A (2.1) BS05 MG ? GO:0005524 ... I6V0C7 30010948
    115779 5yve:A (3.4) BS01 MG ? GO:0001614 ... P56373 29674445
    115780 5yvk:A (1.292) BS02 CA ? GO:0046872 ... V5TER4 30222239
    115781 5yvk:A (1.292) BS03 CA ? GO:0046872 ... V5TER4 30222239
    115782 5yvl:A (2.059) BS01 CA ? GO:0046872 ... A0A076NBW8 30222239
    115783 5yvl:A (2.059) BS02 CA ? GO:0046872 ... A0A076NBW8 30222239
    115784 5yvl:B (2.059) BS01 CA ? GO:0046872 ... A0A076NBW8 30222239
    115785 5yvl:B (2.059) BS02 CA ? GO:0046872 ... A0A076NBW8 30222239
    115786 5yvl:C (2.059) BS01 CA ? GO:0046872 ... A0A076NBW8 30222239
    115787 5yvl:C (2.059) BS02 CA ? GO:0046872 ... A0A076NBW8 30222239
    115788 5yvl:D (2.059) BS01 CA ? GO:0046872 ... A0A076NBW8 30222239
    115789 5yvl:D (2.059) BS02 CA ? GO:0046872 ... A0A076NBW8 30222239
    115790 5yvm:A (2.12) BS01 MN ? GO:0000166 ... A0A133UP32 29188989
    115791 5yvp:A (2.051) BS01 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    115792 5yvp:A (2.051) BS02 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    115793 5yvp:B (2.051) BS01 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    115794 5yvp:B (2.051) BS02 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    115795 5yvp:C (2.051) BS01 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    115796 5yvp:C (2.051) BS02 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    115797 5yvp:D (2.051) BS01 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    115798 5yvp:D (2.051) BS02 CA ? GO:0046872 ... A0A1P8VSI6 30222239
    115799 5yvr:A (1.896) BS01 MN ? GO:0000166 ... A0A133UP32 29188989
    115800 5yvs:A (2.345) BS01 MN ? GO:0000166 ... A0A133UP32 29188989

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218