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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    115201 5yiz:Y (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115202 5yiz:b (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115203 5yiz:e (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115204 5yiz:h (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115205 5yiz:k (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115206 5yiz:n (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115207 5yiz:q (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115208 5yiz:t (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115209 5yj0:A (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115210 5yj0:D (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115211 5yj0:G (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115212 5yj0:J (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115213 5yj0:M (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115214 5yj0:P (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115215 5yj0:S (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115216 5yj0:V (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115217 5yj0:Y (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115218 5yj0:b (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115219 5yj0:e (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115220 5yj0:h (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115221 5yj0:k (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115222 5yj0:n (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115223 5yj0:q (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115224 5yj0:t (1.8) BS02 ZN ? N/A Q8C7D2 29358579
    115225 5yj1:A (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115226 5yj1:D (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115227 5yj1:G (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115228 5yj1:J (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115229 5yj1:M (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115230 5yj1:P (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115231 5yj1:S (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115232 5yj1:V (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115233 5yj1:Y (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115234 5yj1:b (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115235 5yj1:e (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115236 5yj1:h (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115237 5yj1:k (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115238 5yj1:n (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115239 5yj1:q (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115240 5yj1:t (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115241 5yj3:C (2.845) BS03 ZN ? N/A P10074 29134956
    115242 5yj3:C (2.845) BS04 ZN ? N/A P10074 29134956
    115243 5yj3:D (2.845) BS03 ZN ? N/A P10074 29134956
    115244 5yj3:D (2.845) BS04 ZN ? N/A P10074 29134956
    115245 5yj7:C (1.61) BS01 CA 3.2.1.21 GO:0004553 ... A0A452CSM4 33347927
    115246 5yj9:D (2.53) BS02 MG 2.7.11.1 GO:0004672 ... D6WMX4 29991771
    115247 5yjg:A (2.399) BS02 CA ? N/A Q15063 29754429
    115248 5yjg:A (2.399) BS03 CA ? N/A Q15063 29754429
    115249 5yjg:A (2.399) BS04 CA ? N/A Q15063 29754429
    115250 5yjg:A (2.399) BS05 MG ? N/A Q15063 29754429
    115251 5yjg:A (2.399) BS06 MG ? N/A Q15063 29754429
    115252 5yjg:A (2.399) BS07 MG ? N/A Q15063 29754429
    115253 5yjg:A (2.399) BS08 MG ? N/A Q15063 29754429
    115254 5yjg:A (2.399) BS09 MG ? N/A Q15063 29754429
    115255 5yjg:A (2.399) BS10 MG ? N/A Q15063 29754429
    115256 5yjg:A (2.399) BS11 MG ? N/A Q15063 29754429
    115257 5yjh:A (2.957) BS01 MG ? N/A Q15063 29754429
    115258 5yjh:A (2.957) BS02 MG ? N/A Q15063 29754429
    115259 5yjh:A (2.957) BS03 MG ? N/A Q15063 29754429
    115260 5yjh:A (2.957) BS04 MG ? N/A Q15063 29754429
    115261 5yjh:A (2.957) BS05 MG ? N/A Q15063 29754429
    115262 5yjh:A (2.957) BS06 MG ? N/A Q15063 29754429
    115263 5yjh:A (2.957) BS07 MG ? N/A Q15063 29754429
    115264 5yjh:A (2.957) BS08 MG ? N/A Q15063 29754429
    115265 5yjh:A (2.957) BS09 MG ? N/A Q15063 29754429
    115266 5yjj:A (2.2) BS02 MG 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    115267 5yjj:B (2.2) BS02 MG 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    115268 5yjj:C (2.2) BS02 MG 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    115269 5yjj:E (2.2) BS02 MG 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    115270 5yjj:F (2.2) BS02 MG 2.7.7.8 GO:0000175 ... Q8CST1 29242153
    115271 5yjm:A (1.9) BS01 ZN 3.4.21.39 GO:0002003 ... P23946 29191554
    115272 5yjo:A (2.135) BS01 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 31223458
    115273 5yjo:A (2.135) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 31223458
    115274 5yjo:A (2.135) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 31223458
    115275 5yjp:A (1.8) BS01 ZN 3.4.21.39 GO:0002003 ... P23946 29191554
    115276 5yjs:A (2.16) BS02 CU1 ? GO:0046872 ... A0A452CSM5 30181145
    115277 5yjs:B (2.16) BS02 CU1 ? GO:0046872 ... A0A452CSM5 30181145
    115278 5yjw:A (1.85) BS02 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115279 5yjw:A (1.85) BS03 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115280 5yjw:A (1.85) BS04 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115281 5yjx:A (3.21) BS02 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115282 5yjx:A (3.21) BS03 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115283 5yjx:A (3.21) BS04 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115284 5yjx:A (3.21) BS05 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115285 5yjx:B (3.21) BS02 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115286 5yjx:B (3.21) BS03 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115287 5yjx:B (3.21) BS04 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115288 5yjx:B (3.21) BS05 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115289 5yjy:A (3.4) BS02 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115290 5yjy:A (3.4) BS03 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115291 5yjy:A (3.4) BS04 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115292 5yjy:A (3.4) BS05 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115293 5yjy:B (3.4) BS02 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115294 5yjy:B (3.4) BS03 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115295 5yjy:B (3.4) BS04 MG 1.6.5.9 GO:0003954 ... P32340 29402945
    115296 5yka:A (1.448) BS01 CO ? GO:0046872 ... B3DUR4 30092253
    115297 5ykb:A (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    115298 5ykb:A (2.76) BS02 MG 5.4.99.16 GO:0003824 ... I3NX86 29095151
    115299 5ykb:B (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    115300 5ykb:B (2.76) BS02 MG 5.4.99.16 GO:0003824 ... I3NX86 29095151
    115301 5ykb:C (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    115302 5ykb:C (2.76) BS02 MG 5.4.99.16 GO:0003824 ... I3NX86 29095151
    115303 5ykb:D (2.76) BS01 CA 5.4.99.16 GO:0003824 ... I3NX86 29095151
    115304 5ykb:D (2.76) BS02 MG 5.4.99.16 GO:0003824 ... I3NX86 29095151
    115305 5ykd:A (2.17) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    115306 5ykd:A (2.17) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    115307 5ykd:B (2.17) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    115308 5ykd:B (2.17) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    115309 5ykd:C (2.17) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    115310 5ykd:C (2.17) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    115311 5ykd:D (2.17) BS01 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    115312 5ykd:D (2.17) BS02 ZN 3.5.2.2 GO:0004157 ... Q9I676 29666631
    115313 5ykn:A (2.3) BS01 ZN 1.14.11.67 N/A Q8GUI6 29233856
    115314 5ykn:A (2.3) BS02 ZN 1.14.11.67 N/A Q8GUI6 29233856
    115315 5yko:A (2.9) BS02 ZN 1.14.11.67 N/A Q8GUI6 29233856
    115316 5yko:A (2.9) BS03 ZN 1.14.11.67 N/A Q8GUI6 29233856
    115317 5ykp:A (1.68) BS01 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    115318 5ykp:A (1.68) BS02 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    115319 5ykp:A (1.68) BS03 CO 3.4.11.18 GO:0006508 ... P53582 30837307
    115320 5yl1:A (3.12) BS01 CA ? GO:0005198 ... A5H7Q8 30820467
    115321 5yl1:A (3.12) BS02 CA ? GO:0005198 ... A5H7Q8 30820467
    115322 5yl2:A (2.09) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    115323 5yl2:C (2.09) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    115324 5yl4:A (2.64) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    115325 5yl4:C (2.64) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    115326 5yl6:A (2.0) BS01 FE ? GO:0006974 ... Q9UT12 N/A
    115327 5yl7:A (1.4) BS02 CA ? GO:0004252 ... A0A290S6P3 29466378
    115328 5yl7:A (1.4) BS03 CA ? GO:0004252 ... A0A290S6P3 29466378
    115329 5yl7:A (1.4) BS04 CA ? GO:0004252 ... A0A290S6P3 29466378
    115330 5yl7:A (1.4) BS05 CA ? GO:0004252 ... A0A290S6P3 29466378
    115331 5ylb:A (1.79) BS01 FE ? GO:0006974 ... Q9UT12 N/A
    115332 5ylc:A (1.5) BS01 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 29079699
    115333 5yle:A (1.85) BS02 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 29079699
    115334 5ylf:A (1.5) BS02 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 29079699
    115335 5ylg:A (1.48) BS01 ZN ? N/A Q0WYK2 N/A
    115336 5ylg:C (1.48) BS01 ZN ? N/A Q0WYK2 N/A
    115337 5ylj:A (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    115338 5ylj:C (2.7) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    115339 5yln:A (2.189) BS01 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    115340 5yln:A (2.189) BS02 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    115341 5yln:B (2.189) BS01 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    115342 5yln:B (2.189) BS02 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    115343 5yln:C (2.189) BS01 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    115344 5yln:C (2.189) BS02 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    115345 5yln:D (2.189) BS01 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    115346 5yln:D (2.189) BS02 ZN 1.1.1.1 GO:0004022 ... A0A0H2ZRI0 N/A
    115347 5yls:A (3.0) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    115348 5yls:C (3.0) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    115349 5ylu:A (2.79989) BS02 MG 7.2.2.19 GO:0000166 ... P19156 29618813
    115350 5ylv:A (2.79978) BS02 MG 7.2.2.19 GO:0000166 ... P19156 29618813
    115351 5ylz:C (3.6) BS03 MG ? GO:0000244 ... P36048 29153833
    115352 5ylz:L (3.6) BS03 ZN ? GO:0000282 ... P25337 29153833
    115353 5ylz:L (3.6) BS04 ZN ? GO:0000282 ... P25337 29153833
    115354 5ylz:L (3.6) BS05 ZN ? GO:0000282 ... P25337 29153833
    115355 5ylz:M (3.6) BS02 ZN ? GO:0000398 ... P38241 29153833
    115356 5ylz:M (3.6) BS03 ZN ? GO:0000398 ... P38241 29153833
    115357 5ylz:N (3.6) BS03 ZN ? GO:0000387 ... Q12046 29153833
    115358 5yn2:A (2.301) BS01 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115359 5yn2:A (2.301) BS02 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115360 5yn2:A (2.301) BS03 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115361 5yn2:A (2.301) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115362 5yn3:A (2.7) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29385668
    115363 5yn3:A (2.7) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29385668
    115364 5yn3:B (2.7) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29385668
    115365 5yn3:B (2.7) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29385668
    115366 5yn3:C (2.7) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29385668
    115367 5yn3:C (2.7) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29385668
    115368 5yn3:D (2.7) BS01 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29385668
    115369 5yn3:D (2.7) BS02 MN 5.3.1.5 GO:0005975 ... Q9P8C9 29385668
    115370 5yn5:B (1.96) BS01 ZN 3.4.19.12 GO:0003723 ... K4LC41 N/A
    115371 5yn5:B (1.96) BS02 ZN 3.4.19.12 GO:0003723 ... K4LC41 N/A
    115372 5yn6:B (1.947) BS01 ZN 3.4.19.12 GO:0003723 ... K4LC41 N/A
    115373 5yn6:B (1.947) BS02 ZN 3.4.19.12 GO:0003723 ... K4LC41 N/A
    115374 5yn7:A (2.586) BS03 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115375 5yn7:A (2.586) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115376 5yn7:A (2.586) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115377 5yn7:A (2.586) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115378 5yn8:B (1.97) BS01 ZN 3.4.19.12 GO:0003723 ... K4LC41 N/A
    115379 5yn8:B (1.97) BS02 ZN 3.4.19.12 GO:0003723 ... K4LC41 N/A
    115380 5yna:A (1.96) BS03 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115381 5yna:A (1.96) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115382 5yna:A (1.96) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115383 5yna:A (1.96) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115384 5ynb:B (1.98) BS01 ZN 3.4.19.12 GO:0003723 ... K4LC41 N/A
    115385 5ynb:B (1.98) BS02 ZN 3.4.19.12 GO:0003723 ... K4LC41 N/A
    115386 5ync:A (2.32) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115387 5ync:A (2.32) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115388 5ync:A (2.32) BS07 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115389 5ync:A (2.32) BS08 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115390 5ynd:A (2.227) BS03 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115391 5ynd:A (2.227) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115392 5ynd:A (2.227) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115393 5ynd:A (2.227) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115394 5yne:A (2.199) BS04 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115395 5yne:A (2.199) BS05 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115396 5yne:A (2.199) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115397 5yne:A (2.199) BS07 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770
    115398 5ynf:B (1.791) BS01 ZN 3.4.19.12 GO:0003723 ... K4LC41 N/A
    115399 5ynf:B (1.791) BS02 ZN 3.4.19.12 GO:0003723 ... K4LC41 N/A
    115400 5ynh:A (2.05) BS06 CA 3.2.1.41 GO:0004553 ... W9BQ28 30387770

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218