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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    115001 5ybi:B (2.268) BS04 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    115002 5ybi:B (2.268) BS05 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    115003 5ybi:B (2.268) BS06 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    115004 5ybi:B (2.268) BS07 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    115005 5ybi:B (2.268) BS08 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    115006 5ybi:B (2.268) BS09 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    115007 5ybi:B (2.268) BS10 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    115008 5ybi:B (2.268) BS11 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    115009 5ybl:A (2.108) BS01 MN 1.14.11.- GO:0005575 ... Q5AR34 29317628
    115010 5ybl:B (2.108) BS01 MN 1.14.11.- GO:0005575 ... Q5AR34 29317628
    115011 5ybl:C (2.108) BS01 MN 1.14.11.- GO:0005575 ... Q5AR34 29317628
    115012 5ybl:D (2.108) BS01 MN 1.14.11.- GO:0005575 ... Q5AR34 29317628
    115013 5ybn:A (2.104) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115014 5ybn:B (2.104) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115015 5ybo:A (2.204) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115016 5ybo:B (2.204) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115017 5ybp:A (2.312) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115018 5ybp:B (2.312) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115019 5ybq:A (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115020 5ybq:B (2.25) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115021 5ybr:A (2.261) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115022 5ybr:B (2.261) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115023 5ybs:A (2.3) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115024 5ybs:B (2.3) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115025 5ybt:A (2.35) BS01 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115026 5ybt:B (2.35) BS02 FE 1.14.11.- GO:0016114 ... A0A1E1FFL0 29317628
    115027 5yc3:A (2.601) BS02 ZN ? GO:0006355 ... Q9M2B4 29386129
    115028 5yc3:A (2.601) BS03 ZN ? GO:0006355 ... Q9M2B4 29386129
    115029 5yc4:A (2.697) BS02 ZN ? GO:0006355 ... Q9M2B4 29386129
    115030 5yc4:A (2.697) BS03 ZN ? GO:0006355 ... Q9M2B4 29386129
    115031 5yd0:A (3.182) BS01 ZN 3.1.-.- N/A Q5U311 29563550
    115032 5yd0:B (3.182) BS01 ZN 3.1.-.- N/A Q5U311 29563550
    115033 5yd0:C (3.182) BS01 ZN 3.1.-.- N/A Q5U311 29563550
    115034 5yd0:D (3.182) BS01 ZN 3.1.-.- N/A Q5U311 29563550
    115035 5yd7:A (1.7) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    115036 5yd7:A (1.7) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    115037 5yd7:B (1.7) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    115038 5yd7:B (1.7) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 N/A
    115039 5ydj:B (3.04) BS01 CO 3.1.1.7 GO:0004104 ... Q869C3 N/A
    115040 5ydr:B (2.003) BS01 ZN 2.1.1.37 N/A P26358 29471350
    115041 5ye4:B (1.799) BS02 ZN N/A N/A N/A 30080437
    115042 5yec:A (2.147) BS01 ZN ? GO:0008641 ... P38862 29237558
    115043 5yec:C (2.147) BS01 ZN ? GO:0008641 ... P38862 29237558
    115044 5yef:A (2.807) BS03 ZN ? N/A P49711 29076501
    115045 5yef:A (2.807) BS04 ZN ? N/A P49711 29076501
    115046 5yef:A (2.807) BS05 ZN ? N/A P49711 29076501
    115047 5yef:A (2.807) BS06 ZN ? N/A P49711 29076501
    115048 5yef:A (2.807) BS07 ZN ? N/A P49711 29076501
    115049 5yef:A (2.807) BS08 ZN ? N/A P49711 29076501
    115050 5yef:B (2.807) BS03 ZN ? N/A P49711 29076501
    115051 5yef:B (2.807) BS04 ZN ? N/A P49711 29076501
    115052 5yef:B (2.807) BS05 ZN ? N/A P49711 29076501
    115053 5yef:B (2.807) BS06 ZN ? N/A P49711 29076501
    115054 5yef:B (2.807) BS07 ZN ? N/A P49711 29076501
    115055 5yef:B (2.807) BS08 ZN ? N/A P49711 29076501
    115056 5yef:G (2.807) BS03 ZN ? N/A P49711 29076501
    115057 5yef:G (2.807) BS04 ZN ? N/A P49711 29076501
    115058 5yef:G (2.807) BS05 ZN ? N/A P49711 29076501
    115059 5yef:G (2.807) BS06 ZN ? N/A P49711 29076501
    115060 5yef:G (2.807) BS07 ZN ? N/A P49711 29076501
    115061 5yef:G (2.807) BS08 ZN ? N/A P49711 29076501
    115062 5yef:J (2.807) BS03 ZN ? N/A P49711 29076501
    115063 5yef:J (2.807) BS04 ZN ? N/A P49711 29076501
    115064 5yef:J (2.807) BS05 ZN ? N/A P49711 29076501
    115065 5yef:J (2.807) BS06 ZN ? N/A P49711 29076501
    115066 5yef:J (2.807) BS07 ZN ? N/A P49711 29076501
    115067 5yef:J (2.807) BS08 ZN ? N/A P49711 29076501
    115068 5yeg:A (2.0) BS04 ZN ? N/A P49711 29076501
    115069 5yeg:A (2.0) BS05 ZN ? N/A P49711 29076501
    115070 5yeg:A (2.0) BS06 ZN ? N/A P49711 29076501
    115071 5yeg:A (2.0) BS07 ZN ? N/A P49711 29076501
    115072 5yeg:A (2.0) BS08 ZN ? N/A P49711 29076501
    115073 5yeg:B (2.0) BS03 ZN ? N/A P49711 29076501
    115074 5yeg:B (2.0) BS04 ZN ? N/A P49711 29076501
    115075 5yeg:B (2.0) BS05 ZN ? N/A P49711 29076501
    115076 5yeg:B (2.0) BS06 ZN ? N/A P49711 29076501
    115077 5yeg:B (2.0) BS07 ZN ? N/A P49711 29076501
    115078 5yeh:A (2.328) BS04 ZN ? N/A P49711 29076501
    115079 5yeh:A (2.328) BS05 ZN ? N/A P49711 29076501
    115080 5yeh:A (2.328) BS06 ZN ? N/A P49711 29076501
    115081 5yeh:A (2.328) BS07 ZN ? N/A P49711 29076501
    115082 5yeh:A (2.328) BS08 ZN ? N/A P49711 29076501
    115083 5yeh:B (2.328) BS03 ZN ? N/A P49711 29076501
    115084 5yeh:B (2.328) BS04 ZN ? N/A P49711 29076501
    115085 5yeh:B (2.328) BS05 ZN ? N/A P49711 29076501
    115086 5yeh:B (2.328) BS06 ZN ? N/A P49711 29076501
    115087 5yeh:B (2.328) BS07 ZN ? N/A P49711 29076501
    115088 5yel:A (2.96) BS03 ZN ? N/A P49711 29076501
    115089 5yel:A (2.96) BS04 ZN ? N/A P49711 29076501
    115090 5yel:A (2.96) BS05 ZN ? N/A P49711 29076501
    115091 5yel:A (2.96) BS06 ZN ? N/A P49711 29076501
    115092 5yel:A (2.96) BS07 ZN ? N/A P49711 29076501
    115093 5yel:A (2.96) BS08 ZN ? N/A P49711 29076501
    115094 5yel:B (2.96) BS03 ZN ? N/A P49711 29076501
    115095 5yel:B (2.96) BS04 ZN ? N/A P49711 29076501
    115096 5yel:B (2.96) BS05 ZN ? N/A P49711 29076501
    115097 5yel:B (2.96) BS06 ZN ? N/A P49711 29076501
    115098 5yel:B (2.96) BS07 ZN ? N/A P49711 29076501
    115099 5yel:B (2.96) BS08 ZN ? N/A P49711 29076501
    115100 5yem:A (1.49) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    115101 5yem:A (1.49) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    115102 5yem:B (1.49) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    115103 5yem:B (1.49) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    115104 5yem:B (1.49) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    115105 5yem:C (1.49) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    115106 5yem:C (1.49) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    115107 5yem:D (1.49) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR5 38265876
    115108 5yeq:B (1.75) BS01 MG 1.1.1.86 GO:0000287 ... Q4J8K9 29739976
    115109 5yeu:A (3.001) BS01 MG ? N/A Q5UQV1 30428313
    115110 5yeu:B (3.001) BS01 MG ? N/A Q5UQV1 30428313
    115111 5yew:A (3.2) BS03 K 3.6.5.- GO:0003924 ... Q8IWA4 29483649
    115112 5yew:A (3.2) BS04 MG 3.6.5.- GO:0003924 ... Q8IWA4 29483649
    115113 5yew:B (3.2) BS03 K 3.6.5.- GO:0003924 ... Q8IWA4 29483649
    115114 5yew:B (3.2) BS04 MG 3.6.5.- GO:0003924 ... Q8IWA4 29483649
    115115 5yew:C (3.2) BS03 K 3.6.5.- GO:0003924 ... Q8IWA4 29483649
    115116 5yew:C (3.2) BS04 MG 3.6.5.- GO:0003924 ... Q8IWA4 29483649
    115117 5yf0:B (2.25) BS02 CA 2.1.1.22 GO:0008757 ... Q8N4J0 29463897
    115118 5yf1:B (2.399) BS03 CA 2.1.1.22 GO:0008757 ... Q8N4J0 29463897
    115119 5yf4:A (1.897) BS02 ZN ? N/A Q9Y3A3 30072378
    115120 5yf4:A (1.897) BS03 ZN ? N/A Q9Y3A3 30072378
    115121 5yfb:A (2.2) BS01 ZN 3.4.14.4 GO:0004177 ... B0S4Q0 29050944
    115122 5yfb:B (2.2) BS01 ZN 3.4.14.4 GO:0004177 ... B0S4Q0 29050944
    115123 5yfd:A (1.76) BS01 CU 3.4.14.4 GO:0004177 ... B0S4Q0 29050944
    115124 5yfd:B (1.76) BS01 CU 3.4.14.4 GO:0004177 ... B0S4Q0 29050944
    115125 5yfi:H (1.848) BS01 ZN N/A N/A N/A 30510193
    115126 5yfi:L (1.848) BS01 ZN N/A N/A N/A 30510193
    115127 5yfm:A (2.4) BS02 MG 1.1.1.42 GO:0000287 ... O75874 N/A
    115128 5yfm:B (2.4) BS02 MG 1.1.1.42 GO:0000287 ... O75874 N/A
    115129 5yfm:C (2.4) BS02 MG 1.1.1.42 GO:0000287 ... O75874 N/A
    115130 5yfn:A (2.5) BS01 MG 1.1.1.42 GO:0000287 ... O75874 N/A
    115131 5ygi:A (2.177) BS01 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 30270039
    115132 5ygi:A (2.177) BS02 MG 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 30270039
    115133 5ygm:A (1.6) BS01 CA ? GO:0005537 ... P55915 29025256
    115134 5ygm:A (1.6) BS02 MN ? GO:0005537 ... P55915 29025256
    115135 5yh1:A (2.18) BS01 MN ? N/A Q8U3Q7 N/A
    115136 5yho:A (2.401) BS01 ZN 4.1.1.5 GO:0016831 ... P05361 N/A
    115137 5yho:B (2.401) BS01 ZN 4.1.1.5 GO:0016831 ... P05361 N/A
    115138 5yht:A (2.87) BS01 ZN 3.1.3.15 GO:0000105 ... P95189 29752410
    115139 5yht:A (2.87) BS02 ZN 3.1.3.15 GO:0000105 ... P95189 29752410
    115140 5yht:B (2.87) BS01 ZN 3.1.3.15 GO:0000105 ... P95189 29752410
    115141 5yhw:D (2.7) BS05 MG ? N/A I3LG77 31152619
    115142 5yhw:G (2.7) BS06 MG ? N/A I3LG77 31152619
    115143 5yhx:A (2.4) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115144 5yhx:A (2.4) BS02 ZN ? GO:0003677 ... Q9CDU5 29229866
    115145 5yhx:B (2.4) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115146 5yhx:B (2.4) BS02 ZN ? GO:0003677 ... Q9CDU5 29229866
    115147 5yhx:G (2.4) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115148 5yhx:G (2.4) BS02 ZN ? GO:0003677 ... Q9CDU5 29229866
    115149 5yhx:H (2.4) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115150 5yhx:H (2.4) BS02 ZN ? GO:0003677 ... Q9CDU5 29229866
    115151 5yhx:M (2.4) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115152 5yhx:M (2.4) BS02 ZN ? GO:0003677 ... Q9CDU5 29229866
    115153 5yhx:N (2.4) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115154 5yhx:N (2.4) BS02 ZN ? GO:0003677 ... Q9CDU5 29229866
    115155 5yhx:S (2.4) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115156 5yhx:S (2.4) BS02 ZN ? GO:0003677 ... Q9CDU5 29229866
    115157 5yhx:T (2.4) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115158 5yhx:T (2.4) BS02 ZN ? GO:0003677 ... Q9CDU5 29229866
    115159 5yhy:A (1.65) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115160 5yhz:A (1.9) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115161 5yhz:A (1.9) BS02 ZN ? GO:0003677 ... Q9CDU5 29229866
    115162 5yi0:A (2.3) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115163 5yi0:B (2.3) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115164 5yi0:C (2.3) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115165 5yi0:D (2.3) BS01 ZN ? GO:0003677 ... Q9CDU5 29229866
    115166 5yi2:A (2.6) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115167 5yi2:A (2.6) BS05 ZN ? GO:0003677 ... Q9CDU5 29229866
    115168 5yi2:B (2.6) BS03 ZN ? GO:0003677 ... Q9CDU5 29229866
    115169 5yi2:B (2.6) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115170 5yi2:E (2.6) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115171 5yi2:E (2.6) BS05 ZN ? GO:0003677 ... Q9CDU5 29229866
    115172 5yi2:F (2.6) BS03 ZN ? GO:0003677 ... Q9CDU5 29229866
    115173 5yi2:F (2.6) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115174 5yi2:I (2.6) BS03 ZN ? GO:0003677 ... Q9CDU5 29229866
    115175 5yi2:I (2.6) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115176 5yi2:J (2.6) BS05 ZN ? GO:0003677 ... Q9CDU5 29229866
    115177 5yi2:J (2.6) BS06 ZN ? GO:0003677 ... Q9CDU5 29229866
    115178 5yi2:M (2.6) BS03 ZN ? GO:0003677 ... Q9CDU5 29229866
    115179 5yi2:M (2.6) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115180 5yi2:N (2.6) BS03 ZN ? GO:0003677 ... Q9CDU5 29229866
    115181 5yi2:N (2.6) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115182 5yi3:A (2.9) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115183 5yi3:B (2.9) BS03 ZN ? GO:0003677 ... Q9CDU5 29229866
    115184 5yi3:E (2.9) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115185 5yi3:F (2.9) BS03 ZN ? GO:0003677 ... Q9CDU5 29229866
    115186 5yi3:I (2.9) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115187 5yi3:J (2.9) BS03 ZN ? GO:0003677 ... Q9CDU5 29229866
    115188 5yi3:M (2.9) BS04 ZN ? GO:0003677 ... Q9CDU5 29229866
    115189 5yi3:N (2.9) BS03 ZN ? GO:0003677 ... Q9CDU5 29229866
    115190 5yiq:A (2.6) BS02 ZN ? GO:0000421 ... Q9CQV6 29867141
    115191 5yiq:A (2.6) BS03 ZN ? GO:0000421 ... Q9CQV6 29867141
    115192 5yix:B (2.302) BS02 ZN ? N/A A0A0H3C9J4 29514271
    115193 5yiz:A (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115194 5yiz:D (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115195 5yiz:G (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115196 5yiz:J (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115197 5yiz:M (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115198 5yiz:P (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115199 5yiz:S (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    115200 5yiz:V (2.0) BS02 ZN ? N/A Q8C7D2 29358579
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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