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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    114801 5y17:A (2.3) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114802 5y17:A (2.3) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114803 5y17:B (2.3) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114804 5y17:B (2.3) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114805 5y17:C (2.3) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114806 5y17:D (2.3) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114807 5y19:A (1.83) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114808 5y1h:A (1.73) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114809 5y1k:A (1.81) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114810 5y1q:A (2.14) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114811 5y1r:A (1.69) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114812 5y1s:A (1.66) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114813 5y1t:A (2.14) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114814 5y1v:A (1.62) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114815 5y1w:A (1.56) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114816 5y1x:A (1.55) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114817 5y1z:C (2.676) BS01 ZN ? GO:0006355 ... Q9ULU4 28966017
    114818 5y1z:C (2.676) BS02 ZN ? GO:0006355 ... Q9ULU4 28966017
    114819 5y1z:C (2.676) BS03 ZN ? GO:0006355 ... Q9ULU4 28966017
    114820 5y1z:D (2.676) BS01 ZN ? GO:0006355 ... Q9ULU4 28966017
    114821 5y1z:D (2.676) BS02 ZN ? GO:0006355 ... Q9ULU4 28966017
    114822 5y1z:D (2.676) BS03 ZN ? GO:0006355 ... Q9ULU4 28966017
    114823 5y20:A (2.409) BS02 ZN ? GO:0006355 ... Q9FFF5 29386129
    114824 5y20:A (2.409) BS03 ZN ? GO:0006355 ... Q9FFF5 29386129
    114825 5y23:A (1.4) BS01 CU ? GO:0005507 ... P19567 N/A
    114826 5y23:B (1.4) BS01 CU ? GO:0005507 ... P19567 N/A
    114827 5y2f:A (2.53) BS04 ZN 2.3.1.-
    2.3.1.286
    2.4.2.-
    GO:0070403 ... Q8N6T7 30374165
    114828 5y2r:A (1.0) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29354275
    114829 5y2s:A (0.9) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29354275
    114830 5y2z:A (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    114831 5y2z:A (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    114832 5y2z:A (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    114833 5y2z:B (2.67) BS01 CA ? N/A O95970 29670100
    114834 5y2z:C (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    114835 5y2z:C (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    114836 5y2z:C (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    114837 5y2z:D (2.67) BS01 CA ? N/A O95970 29670100
    114838 5y2z:E (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    114839 5y2z:E (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    114840 5y2z:E (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    114841 5y2z:F (2.67) BS01 CA ? N/A O95970 29670100
    114842 5y2z:G (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    114843 5y2z:G (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    114844 5y2z:G (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    114845 5y2z:H (2.67) BS01 CA ? N/A O95970 29670100
    114846 5y2z:I (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    114847 5y2z:I (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    114848 5y2z:I (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    114849 5y2z:J (2.67) BS02 CA ? N/A O95970 29670100
    114850 5y2z:K (2.67) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    114851 5y2z:K (2.67) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    114852 5y2z:K (2.67) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    114853 5y2z:L (2.67) BS01 CA ? N/A O95970 29670100
    114854 5y31:A (7.125) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    114855 5y31:A (7.125) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    114856 5y31:A (7.125) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    114857 5y31:B (7.125) BS01 CA ? GO:0005102 ... O95970 29670100
    114858 5y31:C (7.125) BS01 CA ? GO:0004222 ... Q9P0K1 29670100
    114859 5y31:C (7.125) BS02 CA ? GO:0004222 ... Q9P0K1 29670100
    114860 5y31:C (7.125) BS03 CA ? GO:0004222 ... Q9P0K1 29670100
    114861 5y31:D (7.125) BS01 CA ? GO:0005102 ... O95970 29670100
    114862 5y34:A (1.32) BS03 MG 1.12.5.1 GO:0005886 ... F2Z6J6 22002607
    114863 5y34:C (1.32) BS01 MG 1.12.5.1 GO:0005886 ... F2Z6J6 22002607
    114864 5y36:A (5.2) BS04 MG 3.1.-.- GO:0003677 ... Q99ZW2 29123204
    114865 5y36:A (5.2) BS05 MG 3.1.-.- GO:0003677 ... Q99ZW2 29123204
    114866 5y3e:A (1.65) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0006508 ... P0C6U8 29289665
    114867 5y3i:A (1.73) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114868 5y3q:A (1.65) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0006508 ... P0C6U8 29289665
    114869 5y4c:A (2.701) BS01 CU ? N/A Q25C86 28919419
    114870 5y4h:A (2.6) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 29184120
    114871 5y4i:A (1.91) BS01 MG 5.3.1.5 GO:0000287 ... P24300 28865958
    114872 5y4j:A (1.4) BS01 MG 5.3.1.5 GO:0000287 ... P24300 28865958
    114873 5y4k:A (2.0) BS01 ZN ? GO:0047869 ... N8X9V6 29106934
    114874 5y4n:L (1.69) BS02 MG 1.12.2.1 GO:0008901 ... P21852 28967475
    114875 5y4z:A (1.3) BS02 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 N/A
    114876 5y5b:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 31405855
    114877 5y5b:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 31405855
    114878 5y5e:A (1.8) BS02 CA 3.1.1.4 GO:0004623 ... Q9NZK7 28883454
    114879 5y5n:A (2.3) BS01 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 28989670
    114880 5y5s:1 (1.9) BS01 CA ? GO:0005515 ... D2Z0P2 29618814
    114881 5y5s:3 (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    114882 5y5s:5 (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    114883 5y5s:7 (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    114884 5y5s:9 (1.9) BS01 CA ? GO:0005515 ... D2Z0P2 29618814
    114885 5y5s:A (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    114886 5y5s:C (1.9) BS05 MG ? GO:0005506 ... D2Z0P5 29618814
    114887 5y5s:D (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    114888 5y5s:F (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    114889 5y5s:I (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    114890 5y5s:K (1.9) BS01 CA ? GO:0005515 ... D2Z0P2 29618814
    114891 5y5s:L (1.9) BS06 FE ? GO:0005515 ... D2Z0P3 29618814
    114892 5y5s:M (1.9) BS02 FE ? GO:0005515 ... A8ASG6 29618814
    114893 5y5s:O (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    114894 5y5s:Q (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    114895 5y5s:S (1.9) BS04 CA ? GO:0005515 ... D2Z0P2 29618814
    114896 5y5s:U (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    114897 5y5s:W (1.9) BS03 CA ? GO:0005515 ... D2Z0P2 29618814
    114898 5y5s:Y (1.9) BS02 CA ? GO:0005515 ... D2Z0P2 29618814
    114899 5y6d:A (2.1) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114900 5y6d:A (2.1) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114901 5y6d:B (2.1) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114902 5y6d:B (2.1) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114903 5y6d:C (2.1) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114904 5y6d:C (2.1) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114905 5y6d:D (2.1) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114906 5y6d:D (2.1) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114907 5y6e:A (1.8) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114908 5y6e:A (1.8) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114909 5y6e:B (1.8) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114910 5y6e:B (1.8) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29353720
    114911 5y6k:A (2.86) BS01 FE ? GO:0005515 ... P02787 29323384
    114912 5y6m:A (2.002) BS01 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A024B7W1 29913559
    114913 5y6n:A (1.571) BS01 MN 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A024B7W1 29913559
    114914 5y7f:A (1.35) BS02 CA ? GO:0000166 ... A0A2D0TCJ6 28939828
    114915 5y7g:A (3.4) BS04 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    114916 5y7g:A (3.4) BS05 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    114917 5y7g:B (3.4) BS04 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    114918 5y7g:B (3.4) BS05 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    114919 5y7g:C (3.4) BS04 CA 3.1.4.1 GO:0000287 ... Q9I2N0 29514982
    114920 5y7r:B (1.96) BS01 FE 1.14.11.81 N/A Q5AR53 29314482
    114921 5y7t:B (2.05) BS01 FE 1.14.11.81 N/A Q5AR53 29314482
    114922 5y88:C (3.46) BS03 MG ? GO:0000244 ... P36048 28919079
    114923 5y88:L (3.46) BS04 ZN ? GO:0000282 ... P25337 28919079
    114924 5y88:L (3.46) BS05 ZN ? GO:0000282 ... P25337 28919079
    114925 5y88:L (3.46) BS06 ZN ? GO:0000282 ... P25337 28919079
    114926 5y88:M (3.46) BS02 ZN ? GO:0000398 ... P38241 28919079
    114927 5y88:M (3.46) BS03 ZN ? GO:0000398 ... P38241 28919079
    114928 5y88:N (3.46) BS03 ZN ? GO:0000387 ... Q12046 28919079
    114929 5y8b:A (2.4) BS01 MG ? N/A A5UZ69 28913898
    114930 5y8v:D (2.61) BS01 MG ? GO:0006355 ... O95619 29463709
    114931 5y9e:A (2.042) BS01 MG ? GO:0005198 ... P26535 28951471
    114932 5y9e:A (2.042) BS02 MG ? GO:0005198 ... P26535 28951471
    114933 5y9e:A (2.042) BS03 MG ? GO:0005198 ... P26535 28951471
    114934 5y9e:A (2.042) BS04 MG ? GO:0005198 ... P26535 28951471
    114935 5y9e:B (2.042) BS01 MG ? GO:0005198 ... P26535 28951471
    114936 5y9e:B (2.042) BS02 MG ? GO:0005198 ... P26535 28951471
    114937 5y9e:B (2.042) BS03 MG ? GO:0005198 ... P26535 28951471
    114938 5y9e:B (2.042) BS04 MG ? GO:0005198 ... P26535 28951471
    114939 5y9e:B (2.042) BS05 MG ? GO:0005198 ... P26535 28951471
    114940 5y9e:B (2.042) BS06 MG ? GO:0005198 ... P26535 28951471
    114941 5y9e:B (2.042) BS07 MG ? GO:0005198 ... P26535 28951471
    114942 5y9e:C (2.042) BS01 MG ? GO:0005198 ... P26535 28951471
    114943 5y9e:C (2.042) BS02 MG ? GO:0005198 ... P26535 28951471
    114944 5y9e:C (2.042) BS03 MG ? GO:0005198 ... P26535 28951471
    114945 5y9e:C (2.042) BS04 MG ? GO:0005198 ... P26535 28951471
    114946 5y9e:C (2.042) BS05 MG ? GO:0005198 ... P26535 28951471
    114947 5y9e:D (2.042) BS01 MG ? GO:0005198 ... P26535 28951471
    114948 5y9e:D (2.042) BS02 MG ? GO:0005198 ... P26535 28951471
    114949 5y9e:D (2.042) BS03 MG ? GO:0005198 ... P26535 28951471
    114950 5y9e:D (2.042) BS04 MG ? GO:0005198 ... P26535 28951471
    114951 5y9e:D (2.042) BS05 MG ? GO:0005198 ... P26535 28951471
    114952 5y9e:D (2.042) BS06 MG ? GO:0005198 ... P26535 28951471
    114953 5y9e:E (2.042) BS01 MG ? GO:0005198 ... P26535 28951471
    114954 5y9e:E (2.042) BS02 MG ? GO:0005198 ... P26535 28951471
    114955 5y9e:E (2.042) BS03 MG ? GO:0005198 ... P26535 28951471
    114956 5y9i:A (1.901) BS01 CO ? GO:0046872 ... B3DUR4 N/A
    114957 5y9x:A (1.39) BS01 CO ? GO:0046872 ... B3DUR4 N/A
    114958 5y9y:A (1.599) BS01 CO ? GO:0046872 ... B3DUR4 N/A
    114959 5ya6:A (1.5) BS01 CA ? GO:0005198 ... Q58301 30898768
    114960 5ya6:B (1.5) BS01 CA ? GO:0005198 ... Q58301 30898768
    114961 5yat:A (1.745) BS01 ZN 1.1.1.1 GO:0004022 ... C4R0S8 29474823
    114962 5yat:A (1.745) BS02 ZN 1.1.1.1 GO:0004022 ... C4R0S8 29474823
    114963 5yat:B (1.745) BS01 ZN 1.1.1.1 GO:0004022 ... C4R0S8 29474823
    114964 5yat:B (1.745) BS02 ZN 1.1.1.1 GO:0004022 ... C4R0S8 29474823
    114965 5ybf:A (1.5) BS03 ZN ? GO:0015276 ... P42262 29298820
    114966 5ybf:B (1.5) BS03 ZN ? GO:0015276 ... P42262 29298820
    114967 5ybf:C (1.5) BS02 ZN ? GO:0015276 ... P42262 29298820
    114968 5ybf:C (1.5) BS03 ZN ? GO:0015276 ... P42262 29298820
    114969 5ybf:D (1.5) BS03 ZN ? GO:0015276 ... P42262 29298820
    114970 5ybf:D (1.5) BS04 ZN ? GO:0015276 ... P42262 29298820
    114971 5ybf:E (1.5) BS01 ZN ? GO:0015276 ... P42262 29298820
    114972 5ybf:F (1.5) BS03 ZN ? GO:0015276 ... P42262 29298820
    114973 5ybg:A (1.52) BS03 ZN ? GO:0015276 ... P42262 29298820
    114974 5ybg:B (1.52) BS03 ZN ? GO:0015276 ... P42262 29298820
    114975 5ybg:C (1.52) BS03 ZN ? GO:0015276 ... P42262 29298820
    114976 5ybg:C (1.52) BS04 ZN ? GO:0015276 ... P42262 29298820
    114977 5ybg:D (1.52) BS03 ZN ? GO:0015276 ... P42262 29298820
    114978 5ybg:D (1.52) BS04 ZN ? GO:0015276 ... P42262 29298820
    114979 5ybg:E (1.52) BS01 ZN ? GO:0015276 ... P42262 29298820
    114980 5ybg:F (1.52) BS03 ZN ? GO:0015276 ... P42262 29298820
    114981 5ybh:A (2.5) BS01 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114982 5ybh:A (2.5) BS02 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114983 5ybh:A (2.5) BS03 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114984 5ybh:B (2.5) BS01 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114985 5ybh:B (2.5) BS02 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114986 5ybh:B (2.5) BS03 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114987 5ybh:B (2.5) BS04 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114988 5ybh:B (2.5) BS05 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114989 5ybh:B (2.5) BS06 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114990 5ybh:B (2.5) BS07 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114991 5ybi:A (2.268) BS02 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114992 5ybi:A (2.268) BS03 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114993 5ybi:A (2.268) BS04 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114994 5ybi:A (2.268) BS05 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114995 5ybi:A (2.268) BS06 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114996 5ybi:A (2.268) BS07 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114997 5ybi:A (2.268) BS08 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114998 5ybi:B (2.268) BS01 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    114999 5ybi:B (2.268) BS02 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545
    115000 5ybi:B (2.268) BS03 MG 7.4.2.8 GO:0005524 ... P0A1C1 30013545

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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