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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    114601 5xt2:D (2.652) BS01 MG N/A GO:0000160 ... N/A 29636388
    114602 5xt2:E (2.652) BS01 MG N/A GO:0000160 ... N/A 29636388
    114603 5xt3:A (2.591) BS01 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114604 5xt3:A (2.591) BS02 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114605 5xt3:B (2.591) BS01 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114606 5xt4:A (1.06) BS01 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    114607 5xt5:C (2.34) BS01 ZN 2.-.-.- GO:0005506 ... O32163 29235855
    114608 5xt5:D (2.34) BS01 ZN 2.-.-.- GO:0005506 ... O32163 29235855
    114609 5xt6:C (3.5) BS01 ZN 2.-.-.- GO:0005506 ... O32163 29235855
    114610 5xt6:D (3.5) BS01 ZN 2.-.-.- GO:0005506 ... O32163 29235855
    114611 5xt8:A (2.01) BS01 MG 2.7.4.9 GO:0004798 ... Q5SHX3 29652261
    114612 5xt8:A (2.01) BS02 MG 2.7.4.9 GO:0004798 ... Q5SHX3 29652261
    114613 5xt8:A (2.01) BS03 MG 2.7.4.9 GO:0004798 ... Q5SHX3 29652261
    114614 5xt8:A (2.01) BS04 MG 2.7.4.9 GO:0004798 ... Q5SHX3 29652261
    114615 5xt8:B (2.01) BS01 MG 2.7.4.9 GO:0004798 ... Q5SHX3 29652261
    114616 5xt8:B (2.01) BS02 MG 2.7.4.9 GO:0004798 ... Q5SHX3 29652261
    114617 5xt8:B (2.01) BS03 MG 2.7.4.9 GO:0004798 ... Q5SHX3 29652261
    114618 5xth:2 (3.9) BS01 ZN ? GO:0005740 ... P00428 28844695
    114619 5xth:x (3.9) BS01 CU 7.1.1.9 GO:0004129 ... P00396 28844695
    114620 5xth:x (3.9) BS02 MG 7.1.1.9 GO:0004129 ... P00396 28844695
    114621 5xth:y (3.9) BS01 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    114622 5xth:y (3.9) BS02 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    114623 5xti:2 (17.4) BS01 ZN ? GO:0005740 ... P00428 28844695
    114624 5xti:B2 (17.4) BS01 ZN ? GO:0005740 ... P00428 28844695
    114625 5xti:Bx (17.4) BS01 CU 7.1.1.9 GO:0004129 ... P00396 28844695
    114626 5xti:Bx (17.4) BS02 MG 7.1.1.9 GO:0004129 ... P00396 28844695
    114627 5xti:By (17.4) BS01 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    114628 5xti:By (17.4) BS02 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    114629 5xti:x (17.4) BS01 CU 7.1.1.9 GO:0004129 ... P00396 28844695
    114630 5xti:x (17.4) BS02 MG 7.1.1.9 GO:0004129 ... P00396 28844695
    114631 5xti:y (17.4) BS01 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    114632 5xti:y (17.4) BS02 CU 7.1.1.9 GO:0004129 ... P68530 28844695
    114633 5xtl:A (1.101) BS02 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    114634 5xts:A (2.0) BS01 CA ? N/A P22897 29225077
    114635 5xtv:A (0.931) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    114636 5xtw:A (3.2) BS01 CA ? N/A P22897 29225077
    114637 5xtw:C (3.2) BS01 CA ? N/A P22897 29225077
    114638 5xtw:D (3.2) BS01 CA ? N/A P22897 29225077
    114639 5xtw:E (3.2) BS01 CA ? N/A P22897 29225077
    114640 5xtw:F (3.2) BS01 CA ? N/A P22897 29225077
    114641 5xtw:H (3.2) BS01 CA ? N/A P22897 29225077
    114642 5xu1:A (3.3) BS01 MG ? GO:0005524 ... Q8DQF8 29335499
    114643 5xu1:B (3.3) BS01 MG ? GO:0005524 ... Q8DQF8 29335499
    114644 5xu2:A (0.97) BS01 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    114645 5xu8:A (1.81) BS02 ZN 3.4.19.12 GO:0004843 ... O75604 29449607
    114646 5xu9:A (1.166) BS01 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    114647 5xuf:A (0.88) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    114648 5xui:A (2.77) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 29491261
    114649 5xui:A (2.77) BS02 MG 3.1.4.17 GO:0004114 ... Q9Y233 29491261
    114650 5xui:B (2.77) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 29491261
    114651 5xui:B (2.77) BS02 MG 3.1.4.17 GO:0004114 ... Q9Y233 29491261
    114652 5xuj:A (2.44) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 29491261
    114653 5xuj:B (2.44) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 29491261
    114654 5xuw:A (1.76) BS01 CA 3.2.1.17 GO:0003796 ... P11375 N/A
    114655 5xuw:B (1.76) BS01 CA 3.2.1.17 GO:0003796 ... P11375 N/A
    114656 5xvb:L (1.84) BS01 MG 1.12.99.6 GO:0005886 ... A0A3B6UEP7 30328414
    114657 5xvb:M (1.84) BS01 MG 1.12.99.6 GO:0005886 ... A0A3B6UEP7 30328414
    114658 5xvc:L (2.05) BS01 MG 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 30328414
    114659 5xvc:M (2.05) BS01 MG 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 30328414
    114660 5xvd:L (1.57) BS01 MG 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 30328414
    114661 5xvd:M (1.57) BS01 MG 1.12.99.6 GO:0005886 ... A0A3B6UEQ1 30328414
    114662 5xve:A (1.24) BS01 ZN 3.4.19.12 GO:0004843 ... O75604 29449607
    114663 5xvn:E (3.25) BS03 MG N/A GO:0004521 ... N/A 28869593
    114664 5xvn:F (3.25) BS03 MG N/A GO:0004521 ... N/A 28869593
    114665 5xvn:M (3.25) BS03 MG N/A GO:0004521 ... N/A 28869593
    114666 5xvn:N (3.25) BS03 MG N/A GO:0004521 ... N/A 28869593
    114667 5xvo:E (3.1) BS04 MG N/A GO:0004521 ... N/A 28869593
    114668 5xvo:F (3.1) BS03 MG N/A GO:0004521 ... N/A 28869593
    114669 5xvo:M (3.1) BS04 MG N/A GO:0004521 ... N/A 28869593
    114670 5xvo:N (3.1) BS04 MG N/A GO:0004521 ... N/A 28869593
    114671 5xvp:E (3.0) BS03 MG N/A GO:0004521 ... N/A 28869593
    114672 5xvp:F (3.0) BS03 MG N/A GO:0004521 ... N/A 28869593
    114673 5xvt:A (0.85) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    114674 5xvz:A (1.9) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114675 5xvz:A (1.9) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114676 5xvz:B (1.9) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114677 5xvz:B (1.9) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114678 5xvz:B (1.9) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114679 5xvz:C (1.9) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114680 5xvz:D (1.9) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114681 5xw1:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 N/A
    114682 5xw2:A (1.298) BS02 MG ? GO:0004497 ... D9WMQ6 28687492
    114683 5xw8:A (2.002) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    114684 5xw9:A (2.0) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    114685 5xwa:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    114686 5xwd:A (2.894) BS01 ZN 2.7.10.1 N/A P00533 29462206
    114687 5xwd:A (2.894) BS02 ZN 2.7.10.1 N/A P00533 29462206
    114688 5xwd:A (2.894) BS03 ZN 2.7.10.1 N/A P00533 29462206
    114689 5xwd:A (2.894) BS04 ZN 2.7.10.1 N/A P00533 29462206
    114690 5xwd:A (2.894) BS05 ZN 2.7.10.1 N/A P00533 29462206
    114691 5xwd:D (2.894) BS01 ZN N/A N/A N/A 29462206
    114692 5xwd:H (2.894) BS01 ZN N/A N/A N/A 29462206
    114693 5xwi:A (1.872) BS01 ZN 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    114694 5xwi:A (1.872) BS02 ZN 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    114695 5xwi:A (1.872) BS03 CA 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    114696 5xwj:A (1.8) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    114697 5xwj:B (1.8) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    114698 5xwk:A (1.901) BS01 ZN 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    114699 5xwk:A (1.901) BS02 ZN 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    114700 5xwk:A (1.901) BS03 CA 3.1.3.1 GO:0004035 ... A1YYW7 N/A
    114701 5xwl:A (2.1) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    114702 5xwl:B (2.1) BS02 CA 3.4.21.4 GO:0004252 ... P00761 29486250
    114703 5xwm:A (2.45) BS01 ZN ? GO:0003756 ... Q9BS26 30723194
    114704 5xwm:A (2.45) BS02 ZN ? GO:0003756 ... Q9BS26 30723194
    114705 5xwm:A (2.45) BS03 ZN ? GO:0003756 ... Q9BS26 30723194
    114706 5xwm:B (2.45) BS01 ZN ? GO:0003756 ... Q9BS26 30723194
    114707 5xwm:B (2.45) BS02 ZN ? GO:0003756 ... Q9BS26 30723194
    114708 5xwm:B (2.45) BS03 ZN ? GO:0003756 ... Q9BS26 30723194
    114709 5xwm:C (2.45) BS01 ZN ? GO:0003756 ... Q9BS26 30723194
    114710 5xwm:C (2.45) BS02 ZN ? GO:0003756 ... Q9BS26 30723194
    114711 5xwm:C (2.45) BS03 ZN ? GO:0003756 ... Q9BS26 30723194
    114712 5xwm:D (2.45) BS01 ZN ? GO:0003756 ... Q9BS26 30723194
    114713 5xwm:D (2.45) BS02 ZN ? GO:0003756 ... Q9BS26 30723194
    114714 5xwm:D (2.45) BS03 ZN ? GO:0003756 ... Q9BS26 30723194
    114715 5xx9:A (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    114716 5xx9:B (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    114717 5xx9:C (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    114718 5xx9:D (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    114719 5xx9:E (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    114720 5xx9:F (2.6) BS01 FE2 1.16.3.1 GO:0004322 ... Q9S2N0 N/A
    114721 5xxd:A (2.314) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    114722 5xxd:A (2.314) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    114723 5xxd:A (2.314) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    114724 5xxe:C (2.5) BS01 ZN ? N/A O14246 29160296
    114725 5xxe:D (2.5) BS01 ZN ? N/A O14246 29160296
    114726 5xxf:C (3.1) BS01 ZN ? N/A O14246 29160296
    114727 5xxf:D (3.1) BS01 ZN ? N/A O14246 29160296
    114728 5xxg:A (2.14) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    114729 5xxg:A (2.14) BS04 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    114730 5xxg:A (2.14) BS05 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    114731 5xxj:A (1.689) BS01 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    114732 5xxj:A (1.689) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    114733 5xxj:A (1.689) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 N/A
    114734 5xxl:A (1.6) BS01 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    114735 5xxl:B (1.6) BS01 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    114736 5xxm:A (1.7) BS01 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    114737 5xxm:B (1.7) BS01 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    114738 5xxn:A (2.05) BS04 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    114739 5xxn:B (2.05) BS04 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    114740 5xxo:A (2.02) BS02 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    114741 5xxo:B (2.02) BS04 MG 3.2.1.21 GO:0004553 ... Q8A1U1 29131329
    114742 5xxz:A (3.085) BS01 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114743 5xxz:A (3.085) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114744 5xxz:A (3.085) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114745 5xxz:A (3.085) BS04 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114746 5xxz:B (3.085) BS01 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114747 5xxz:B (3.085) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114748 5xxz:B (3.085) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114749 5xy4:A (1.8) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114750 5xy4:A (1.8) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114751 5xy4:B (1.8) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114752 5xy4:B (1.8) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114753 5xy4:B (1.8) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114754 5xy4:C (1.8) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114755 5xy4:C (1.8) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114756 5xy4:D (1.8) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 30289408
    114757 5xya:A (3.0) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114758 5xya:A (3.0) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114759 5xya:A (3.0) BS04 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114760 5xya:A (3.0) BS05 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114761 5xyk:E (2.57) BS02 MN ? GO:0000166 ... E8XCX6 N/A
    114762 5xyn:D (3.3) BS01 ZN ? GO:0000725 ... P38957 29069504
    114763 5xyr:A (2.8) BS01 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114764 5xyr:A (2.8) BS02 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114765 5xyr:A (2.8) BS03 CA 3.4.21.110 GO:0004252 ... Q3HV58 30049896
    114766 5xzb:A (2.13) BS03 ZN 2.7.7.86 N/A Q8C6L5 28963528
    114767 5xze:A (2.177) BS03 ZN 2.7.7.86 N/A Q8C6L5 28963528
    114768 5xzg:A (1.828) BS03 ZN 2.7.7.86 N/A Q8C6L5 28963528
    114769 5xzj:A (1.98) BS02 ZN ? GO:0005506 ... P0ABE7 28992705
    114770 5xzj:A (1.98) BS03 ZN ? GO:0005506 ... P0ABE7 28992705
    114771 5xzj:A (1.98) BS04 ZN ? GO:0005506 ... P0ABE7 28992705
    114772 5xzj:B (1.98) BS02 ZN ? GO:0005506 ... P0ABE7 28992705
    114773 5xzj:B (1.98) BS03 ZN ? GO:0005506 ... P0ABE7 28992705
    114774 5xzj:C (1.98) BS02 ZN ? GO:0005506 ... P0ABE7 28992705
    114775 5xzj:C (1.98) BS03 ZN ? GO:0005506 ... P0ABE7 28992705
    114776 5xzj:D (1.98) BS02 ZN ? GO:0005506 ... P0ABE7 28992705
    114777 5xzj:D (1.98) BS03 ZN ? GO:0005506 ... P0ABE7 28992705
    114778 5xzm:A (1.41) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114779 5xzm:A (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114780 5xzm:B (1.41) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114781 5xzm:B (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114782 5xzm:B (1.41) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114783 5xzm:C (1.41) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114784 5xzm:C (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114785 5xzm:D (1.41) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114786 5xzm:D (1.41) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114787 5xzn:A (1.47) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114788 5xzn:A (1.47) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114789 5xzn:A (1.47) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114790 5xzn:B (1.47) BS01 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114791 5xzn:B (1.47) BS03 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114792 5xzn:B (1.47) BS04 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114793 5xzn:D (1.47) BS02 CA 1.11.1.6 GO:0004096 ... M4GGR7 N/A
    114794 5y05:A (2.799) BS01 ZN ? GO:0046872 ... A0R095 29497021
    114795 5y06:A (2.606) BS01 ZN ? GO:0046872 ... A0R095 29497021
    114796 5y0u:A (-1.00) BS01 ZN ? N/A Q6ZN18 29134516
    114797 5y0u:A (-1.00) BS02 ZN ? N/A Q6ZN18 29134516
    114798 5y0u:A (-1.00) BS03 ZN ? N/A Q6ZN18 29134516
    114799 5y0z:A (2.0) BS01 ZN 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 29685974
    114800 5y0z:B (2.0) BS01 ZN 2.3.1.-
    2.3.1.286    		 GO:0017136 ... Q8IXJ6 29685974
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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