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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    114401 5xlg:L (1.64) BS03 MG 1.12.2.1 GO:0008901 ... P21852 28967475
    114402 5xlh:L (1.93) BS03 MG 1.12.2.1 GO:0008901 ... P21852 28967475
    114403 5xlk:C (3.05) BS01 ZN ? GO:0007155 ... A0A0P0QFX8 28527888
    114404 5xlt:A (2.813) BS02 CA 3.6.5.- GO:0000226 ... P81947 28864414
    114405 5xlt:C (2.813) BS02 CA 3.6.5.- GO:0000226 ... P81947 28864414
    114406 5xlz:A (2.298) BS02 CA 3.6.5.- GO:0000226 ... P81947 29102632
    114407 5xlz:C (2.298) BS02 CA 3.6.5.- GO:0000226 ... P81947 29102632
    114408 5xm3:A (1.701) BS02 MG ? GO:0005509 ... A3FJ48 29492864
    114409 5xm3:C (1.701) BS02 MG ? GO:0005509 ... A3FJ48 29492864
    114410 5xm5:A (1.493) BS01 ZN ? GO:0005737 ... P76344 N/A
    114411 5xm5:A (1.493) BS02 ZN ? GO:0005737 ... P76344 N/A
    114412 5xm5:B (1.493) BS01 ZN ? GO:0005737 ... P76344 N/A
    114413 5xm5:B (1.493) BS02 ZN ? GO:0005737 ... P76344 N/A
    114414 5xm7:A (1.96) BS01 ZN 3.4.11.- GO:0006508 ... O96935 N/A
    114415 5xmo:A (1.19) BS01 CU ? GO:0005507 ... P19567 N/A
    114416 5xmy:A (1.699) BS02 ZN ? N/A Q5VWG9 N/A
    114417 5xmy:A (1.699) BS03 ZN ? N/A Q5VWG9 N/A
    114418 5xmy:C (1.699) BS02 ZN ? N/A Q5VWG9 N/A
    114419 5xmy:C (1.699) BS03 ZN ? N/A Q5VWG9 N/A
    114420 5xmz:A (1.85) BS01 CA ? N/A G0Y276 28633330
    114421 5xn1:A (2.446) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 29374261
    114422 5xn1:C (2.446) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 29374261
    114423 5xn2:A (2.381) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 29374261
    114424 5xn2:C (2.381) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P12497 29374261
    114425 5xn8:A (2.33) BS01 ZN N/A GO:0016491 ... N/A N/A
    114426 5xn8:B (2.33) BS01 ZN N/A GO:0016491 ... N/A N/A
    114427 5xn8:C (2.33) BS01 ZN N/A GO:0016491 ... N/A N/A
    114428 5xn8:D (2.33) BS01 ZN N/A GO:0016491 ... N/A N/A
    114429 5xn9:A (1.449) BS01 MG ? GO:0005576 ... J7MFT5 28703282
    114430 5xn9:A (1.449) BS02 ZN ? GO:0005576 ... J7MFT5 28703282
    114431 5xn9:B (1.449) BS01 ZN ? GO:0005576 ... J7MFT5 28703282
    114432 5xn9:B (1.449) BS02 MG ? GO:0005576 ... J7MFT5 28703282
    114433 5xn9:B (1.449) BS03 ZN ? GO:0005576 ... J7MFT5 28703282
    114434 5xn9:B (1.449) BS04 ZN ? GO:0005576 ... J7MFT5 28703282
    114435 5xna:A (1.802) BS01 ZN ? GO:0005576 ... J7MFT5 28703282
    114436 5xna:A (1.802) BS02 MG ? GO:0005576 ... J7MFT5 28703282
    114437 5xna:B (1.802) BS01 ZN ? GO:0005576 ... J7MFT5 28703282
    114438 5xna:B (1.802) BS02 ZN ? GO:0005576 ... J7MFT5 28703282
    114439 5xna:B (1.802) BS03 ZN ? GO:0005576 ... J7MFT5 28703282
    114440 5xna:B (1.802) BS04 MG ? GO:0005576 ... J7MFT5 28703282
    114441 5xnc:A (1.84) BS03 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114442 5xnc:B (1.84) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114443 5xnc:C (1.84) BS03 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114444 5xnc:D (1.84) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114445 5xnc:E (1.84) BS03 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114446 5xnc:F (1.84) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114447 5xnc:G (1.84) BS03 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114448 5xnd:A (-1.00) BS01 CA ? GO:0005509 ... P59747 29215073
    114449 5xnd:A (-1.00) BS02 CA ? GO:0005509 ... P59747 29215073
    114450 5xne:A (1.501) BS01 ZN 4.1.1.5 GO:0016831 ... Q04777 29796971
    114451 5xne:B (1.501) BS01 ZN 4.1.1.5 GO:0016831 ... Q04777 29796971
    114452 5xnf:A (1.9) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114453 5xnf:B (1.9) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114454 5xnh:A (1.95) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114455 5xnh:H (1.95) BS01 FE 2.5.1.128 GO:0005737 ... Q5JIZ3 28881427
    114456 5xnl:A (2.7) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 28839073
    114457 5xnl:D (2.7) BS01 FE2 1.10.3.9 GO:0005506 ... P06006 28839073
    114458 5xnl:a (2.7) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 28839073
    114459 5xnl:d (2.7) BS01 FE2 1.10.3.9 GO:0005506 ... P06006 28839073
    114460 5xnm:A (3.2) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 28839073
    114461 5xnm:D (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... P06006 28839073
    114462 5xnm:a (3.2) BS02 FE2 1.10.3.9 GO:0005506 ... P06585 28839073
    114463 5xnm:d (3.2) BS01 FE2 1.10.3.9 GO:0005506 ... P06006 28839073
    114464 5xnp:A (3.729) BS01 CA ? N/A Q96NI6 29348579
    114465 5xnp:A (3.729) BS02 CA ? N/A Q96NI6 29348579
    114466 5xnp:A (3.729) BS03 CA ? N/A Q96NI6 29348579
    114467 5xnp:B (3.729) BS01 CA ? N/A Q96NI6 29348579
    114468 5xnp:B (3.729) BS02 CA ? N/A Q96NI6 29348579
    114469 5xnp:B (3.729) BS03 CA ? N/A Q96NI6 29348579
    114470 5xnq:A (2.802) BS01 CA ? N/A Q96NI6 29348579
    114471 5xnr:A (2.3) BS01 CA ? GO:0004553 ... A0A3B6UEP6 29057942
    114472 5xnx:C (3.7) BS01 MG 2.7.6.5
    3.1.7.2    		 GO:0015969 ... P9WHG9 28672070
    114473 5xnx:D (3.7) BS01 MG 2.7.6.5
    3.1.7.2    		 GO:0015969 ... P9WHG9 28672070
    114474 5xob:Z (2.48) BS01 ZN 6.3.4.22 GO:0002101 ... O28025 30121296
    114475 5xob:Z (2.48) BS02 MG 6.3.4.22 GO:0002101 ... O28025 30121296
    114476 5xog:A (3.0) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    114477 5xog:A (3.0) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    114478 5xog:A (3.0) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    114479 5xog:B (3.0) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 28775211
    114480 5xog:C (3.0) BS01 ZN ? GO:0000428 ... C4R7L2 28775211
    114481 5xog:I (3.0) BS01 ZN ? GO:0000428 ... F2QPE6 28775211
    114482 5xog:I (3.0) BS02 ZN ? GO:0000428 ... F2QPE6 28775211
    114483 5xog:J (3.0) BS01 ZN ? GO:0000428 ... C4R009 28775211
    114484 5xog:L (3.0) BS01 ZN ? GO:0001054 ... F2QMI1 28775211
    114485 5xog:M (3.0) BS01 ZN ? N/A A0A1B2JER8 28775211
    114486 5xoi:A (1.8) BS01 MN ? N/A Q10BI6 30061746
    114487 5xoj:A (2.2) BS02 MG N/A GO:0003924 ... N/A 28791779
    114488 5xon:A (3.83) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    114489 5xon:A (3.83) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    114490 5xon:A (3.83) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 28775211
    114491 5xon:B (3.83) BS03 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 28775211
    114492 5xon:C (3.83) BS01 ZN ? GO:0000428 ... C4R7L2 28775211
    114493 5xon:I (3.83) BS01 ZN ? GO:0000428 ... C4QY79 28775211
    114494 5xon:I (3.83) BS02 ZN ? GO:0000428 ... C4QY79 28775211
    114495 5xon:J (3.83) BS01 ZN ? GO:0000428 ... C4R009 28775211
    114496 5xon:L (3.83) BS01 ZN ? GO:0001054 ... C4QWA8 28775211
    114497 5xon:U (3.83) BS01 ZN ? GO:0003676 ... C4R2R6 28775211
    114498 5xon:V (3.83) BS01 ZN ? GO:0000775 ... C4R0E6 28775211
    114499 5xop:A (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    114500 5xop:A (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    114501 5xop:B (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    114502 5xop:B (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    114503 5xop:B (1.9) BS03 CA ? GO:0005509 ... M3TKH6 17554780
    114504 5xop:C (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    114505 5xop:C (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    114506 5xop:D (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    114507 5xop:D (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    114508 5xop:E (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    114509 5xop:E (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    114510 5xop:F (1.9) BS01 CA ? GO:0005509 ... M3TKH6 17554780
    114511 5xop:F (1.9) BS02 CA ? GO:0005509 ... M3TKH6 17554780
    114512 5xou:A (2.63) BS03 MG 3.1.24.- GO:0003676 ... Q746M7 28911094
    114513 5xox:A (3.0) BS02 MG 2.7.7.79 GO:0000287 ... P53215 28623126
    114514 5xox:B (3.0) BS02 MG 2.7.7.79 GO:0000287 ... P53215 28623126
    114515 5xox:C (3.0) BS02 MG 2.7.7.79 GO:0000287 ... P53215 28623126
    114516 5xox:D (3.0) BS02 MG 2.7.7.79 GO:0000287 ... P53215 28623126
    114517 5xox:E (3.0) BS02 MG 2.7.7.79 GO:0000287 ... P53215 28623126
    114518 5xp3:A (2.3) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    114519 5xp3:C (2.3) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    114520 5xp6:A (0.95) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 29382822
    114521 5xp6:A (0.95) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 29382822
    114522 5xp7:B (2.012) BS02 MG 2.7.10.2 GO:0004672 ... P00523 28535041
    114523 5xp8:A (3.1) BS04 MG 3.1.24.- GO:0003676 ... Q746M7 28911094
    114524 5xp8:A (3.1) BS05 MG 3.1.24.- GO:0003676 ... Q746M7 28911094
    114525 5xp9:A (1.55) BS01 BS3 3.5.2.6 GO:0008270 ... C7C422 29382822
    114526 5xps:A (1.07) BS03 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    114527 5xpx:A (2.77) BS01 ZN 3.1.1.3 GO:0004806 ... A0A0K0PTR1 N/A
    114528 5xpx:A (2.77) BS02 CA 3.1.1.3 GO:0004806 ... A0A0K0PTR1 N/A
    114529 5xpx:E (2.77) BS01 ZN 3.1.1.3 GO:0004806 ... A0A0K0PTR1 N/A
    114530 5xpx:E (2.77) BS02 CA 3.1.1.3 GO:0004806 ... A0A0K0PTR1 N/A
    114531 5xq3:A (2.85) BS01 CA ? GO:0046872 ... B6H7Q7 29574769
    114532 5xq3:B (2.85) BS01 CA ? GO:0046872 ... B6H7Q7 29574769
    114533 5xqa:A (1.14) BS02 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    114534 5xqg:A (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114535 5xqg:B (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114536 5xqg:C (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114537 5xqg:D (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114538 5xqg:E (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114539 5xqg:F (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114540 5xqg:G (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114541 5xqg:H (2.74) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114542 5xqj:A (2.75) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    114543 5xqj:B (2.75) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114544 5xqj:C (2.75) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    114545 5xqj:D (2.75) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114546 5xqj:E (2.75) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    114547 5xqj:F (2.75) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    114548 5xqj:G (2.75) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    114549 5xqj:H (2.75) BS03 CA ? GO:0046872 ... B6H7Q7 29574769
    114550 5xqk:A (1.12) BS02 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    114551 5xqo:A (3.2) BS05 CA ? GO:0046872 ... B6H7Q7 29574769
    114552 5xqo:B (3.2) BS04 CA ? GO:0046872 ... B6H7Q7 29574769
    114553 5xqz:A (2.1) BS01 ZN ? N/A Q9H8S9 28947795
    114554 5xqz:B (2.1) BS01 ZN ? N/A Q9H8S9 28947795
    114555 5xr2:C (2.6) BS01 ZN 3.1.2.-
    3.5.1.-
    3.5.1.124    		 GO:0005737 ... P64312 29046369
    114556 5xr4:A (2.8) BS02 MG ? GO:0003924 ... P28185 N/A
    114557 5xr6:A (2.6) BS02 MG ? GO:0003924 ... P28185 N/A
    114558 5xr6:B (2.6) BS02 MG ? GO:0003924 ... P28185 N/A
    114559 5xr7:A (2.6) BS02 MG ? GO:0003924 ... P28185 N/A
    114560 5xr7:B (2.6) BS02 MG ? GO:0003924 ... P28185 N/A
    114561 5xrv:A (1.4) BS01 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    114562 5xry:A (1.3) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    114563 5xs6:A (0.972) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    114564 5xs8:A (1.952) BS03 CA ? GO:0046872 ... D1AWE0 29208901
    114565 5xs8:B (1.952) BS03 CA ? GO:0046872 ... D1AWE0 29208901
    114566 5xs8:C (1.952) BS03 CA ? GO:0046872 ... D1AWE0 29208901
    114567 5xs8:D (1.952) BS03 CA ? GO:0046872 ... D1AWE0 29208901
    114568 5xsa:A (0.975) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    114569 5xsb:A (0.918) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    114570 5xsi:A (2.2) BS01 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114571 5xsi:A (2.2) BS02 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114572 5xsi:B (2.2) BS01 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114573 5xsi:B (2.2) BS02 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114574 5xsm:A (0.97) BS01 CA 2.2.1.1 GO:0003824 ... P34736 29243887
    114575 5xsn:A (2.501) BS01 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114576 5xsn:A (2.501) BS02 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114577 5xsn:B (2.501) BS01 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114578 5xsn:B (2.501) BS02 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114579 5xsp:A (2.146) BS01 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114580 5xsp:A (2.146) BS02 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114581 5xsp:B (2.146) BS01 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114582 5xsp:B (2.146) BS02 MN 3.1.4.- GO:0003676 ... A0A0U1MUE2 29203646
    114583 5xsv:A (3.723) BS01 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114584 5xsv:A (3.723) BS02 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114585 5xsv:A (3.723) BS03 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114586 5xsv:A (3.723) BS04 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114587 5xsv:B (3.723) BS01 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114588 5xsv:B (3.723) BS02 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114589 5xsv:B (3.723) BS03 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114590 5xsv:B (3.723) BS04 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114591 5xsv:C (3.723) BS01 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114592 5xsv:C (3.723) BS02 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114593 5xsv:C (3.723) BS03 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114594 5xsv:D (3.723) BS01 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114595 5xsv:D (3.723) BS02 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114596 5xsv:D (3.723) BS03 CO 3.2.1.14 N/A A0A161KIT4 29800365
    114597 5xt0:A (1.15) BS01 CA 2.2.1.1 GO:0003824 ... P34736 30155962
    114598 5xt2:A (2.652) BS01 MG N/A GO:0000160 ... N/A 29636388
    114599 5xt2:B (2.652) BS01 MG N/A GO:0000160 ... N/A 29636388
    114600 5xt2:C (2.652) BS01 MG N/A GO:0000160 ... N/A 29636388
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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