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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    114201 5xch:B (2.85) BS01 ZN ? GO:0005768 ... Q9BI08 28898487
    114202 5xch:B (2.85) BS02 ZN ? GO:0005768 ... Q9BI08 28898487
    114203 5xcv:A (2.143) BS02 CA N/A GO:0004674 ... N/A 28919443
    114204 5xcv:D (2.143) BS02 CA N/A GO:0004674 ... N/A 28919443
    114205 5xd1:A (1.6) BS03 MG 3.6.1.58
    3.6.1.61
    3.6.1.69
    GO:0006260 ... A0QUZ2 28705712
    114206 5xd1:A (1.6) BS04 MG 3.6.1.58
    3.6.1.61
    3.6.1.69
    GO:0006260 ... A0QUZ2 28705712
    114207 5xd2:A (1.75) BS03 MN 3.6.1.58
    3.6.1.61
    3.6.1.69
    GO:0006260 ... A0QUZ2 28705712
    114208 5xd2:A (1.75) BS04 MN 3.6.1.58
    3.6.1.61
    3.6.1.69
    GO:0006260 ... A0QUZ2 28705712
    114209 5xd3:A (1.78) BS03 MG 3.6.1.58
    3.6.1.61
    3.6.1.69
    GO:0006260 ... A0QUZ2 28705712
    114210 5xd4:A (1.47) BS03 MG 3.6.1.58
    3.6.1.61
    3.6.1.69
    GO:0006260 ... A0QUZ2 28705712
    114211 5xd5:A (1.75) BS02 MG 3.6.1.58
    3.6.1.61
    3.6.1.69
    GO:0006260 ... A0QUZ2 28705712
    114212 5xd5:A (1.75) BS03 MG 3.6.1.58
    3.6.1.61
    3.6.1.69
    GO:0006260 ... A0QUZ2 28705712
    114213 5xd5:B (1.75) BS03 MG 3.6.1.58
    3.6.1.61
    3.6.1.69
    GO:0006260 ... A0QUZ2 28705712
    114214 5xd5:B (1.75) BS04 MG 3.6.1.58
    3.6.1.61
    3.6.1.69
    GO:0006260 ... A0QUZ2 28705712
    114215 5xd7:A (2.198) BS01 MG 5.5.1.25 GO:0000287 ... H2IFX0 28716734
    114216 5xd7:A (2.198) BS02 MG 5.5.1.25 GO:0000287 ... H2IFX0 28716734
    114217 5xd8:A (2.505) BS01 MG 5.5.1.25 GO:0000287 ... H2IFX0 28716734
    114218 5xd8:B (2.505) BS01 MG 5.5.1.25 GO:0000287 ... H2IFX0 28716734
    114219 5xd9:A (2.6) BS01 MG 5.5.1.25 GO:0000287 ... H2IFX0 28716734
    114220 5xd9:A (2.6) BS02 MG 5.5.1.25 GO:0000287 ... H2IFX0 28716734
    114221 5xdq:A (1.77) BS03 CU 7.1.1.9 GO:0004129 ... P00396 28695851
    114222 5xdq:A (1.77) BS04 MG 7.1.1.9 GO:0004129 ... P00396 28695851
    114223 5xdq:F (1.77) BS01 ZN ? GO:0005740 ... P00428 28695851
    114224 5xdq:N (1.77) BS03 CU 7.1.1.9 GO:0004129 ... P00396 28695851
    114225 5xdq:N (1.77) BS04 MG 7.1.1.9 GO:0004129 ... P00396 28695851
    114226 5xdq:S (1.77) BS01 ZN ? GO:0005740 ... P00428 28695851
    114227 5xds:A (1.75) BS01 MN 4.2.1.19 GO:0000105 ... P9WML9 34288118
    114228 5xds:A (1.75) BS02 MN 4.2.1.19 GO:0000105 ... P9WML9 34288118
    114229 5xdt:A (1.3) BS02 CA ? GO:0003924 ... Q6GHP9 28621933
    114230 5xdu:A (2.0) BS02 CA ? GO:0003924 ... Q6GHP9 28621933
    114231 5xdv:A (1.7) BS02 CA ? GO:0003924 ... Q6GHP9 28621933
    114232 5xdw:A (2.0) BS02 CA ? GO:0003924 ... Q6GHP9 28621933
    114233 5xdx:A (1.99) BS03 CU 7.1.1.9 GO:0004129 ... P00396 29400318
    114234 5xdx:A (1.99) BS04 MG 7.1.1.9 GO:0004129 ... P00396 29400318
    114235 5xdx:F (1.99) BS01 ZN ? GO:0005740 ... P00428 29400318
    114236 5xdx:N (1.99) BS03 CU 7.1.1.9 GO:0004129 ... P00396 29400318
    114237 5xdx:N (1.99) BS04 MG 7.1.1.9 GO:0004129 ... P00396 29400318
    114238 5xdx:S (1.99) BS01 ZN ? GO:0005740 ... P00428 29400318
    114239 5xe5:A (2.17) BS01 MG 3.7.1.4 GO:0016787 ... B1MK49 30784195
    114240 5xe5:B (2.17) BS01 MG 3.7.1.4 GO:0016787 ... B1MK49 30784195
    114241 5xeg:A (1.8) BS02 MN ? N/A Q10BI6 30061746
    114242 5xek:A (-1.00) BS01 ZN ? N/A Q8WVD5 N/A
    114243 5xek:A (-1.00) BS02 ZN ? N/A Q8WVD5 N/A
    114244 5xem:A (1.84) BS03 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    114245 5xem:B (1.84) BS04 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    114246 5xen:B (1.94) BS04 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    114247 5xeo:B (2.03) BS02 CA 2.5.1.47 GO:0004124 ... Q8RE94 N/A
    114248 5xet:C (2.38) BS02 MG 6.1.1.10 GO:0000166 ... A5U150 30002848
    114249 5xet:C (2.38) BS03 MG 6.1.1.10 GO:0000166 ... A5U150 30002848
    114250 5xev:A (1.4) BS01 ZN 3.4.13.9 GO:0046872 ... Q9RX37 28929533
    114251 5xev:A (1.4) BS02 ZN 3.4.13.9 GO:0046872 ... Q9RX37 28929533
    114252 5xf9:D (2.58) BS03 MG ? GO:0008901 ... A0A077LAI5 28860386
    114253 5xf9:H (2.58) BS03 MG ? GO:0008901 ... A0A077LAI5 28860386
    114254 5xfa:D (2.7) BS02 MG ? GO:0008901 ... A0A077LAI5 28860386
    114255 5xfa:H (2.7) BS02 MG ? GO:0008901 ... A0A077LAI5 28860386
    114256 5xfe:A (1.5) BS01 HG ? GO:0004341 ... Q95YI4 28989719
    114257 5xfe:A (1.5) BS02 HG ? GO:0004341 ... Q95YI4 28989719
    114258 5xfe:A (1.5) BS03 MG ? GO:0004341 ... Q95YI4 28989719
    114259 5xfm:A (2.3) BS01 CA ? GO:0016798 ... Q8A1K0 28804002
    114260 5xfm:B (2.3) BS01 CA ? GO:0016798 ... Q8A1K0 28804002
    114261 5xfm:C (2.3) BS01 CA ? GO:0016798 ... Q8A1K0 28804002
    114262 5xfm:D (2.3) BS01 CA ? GO:0016798 ... Q8A1K0 28804002
    114263 5xfn:A (1.9) BS01 ZN ? N/A O43189 28869966
    114264 5xfn:A (1.9) BS02 ZN ? N/A O43189 28869966
    114265 5xfn:A (1.9) BS03 ZN ? N/A O43189 28869966
    114266 5xfn:A (1.9) BS04 ZN ? N/A O43189 28869966
    114267 5xfo:A (1.9) BS01 ZN ? N/A O43189 28869966
    114268 5xfo:A (1.9) BS02 ZN ? N/A O43189 28869966
    114269 5xfo:A (1.9) BS03 ZN ? N/A O43189 28869966
    114270 5xfo:A (1.9) BS04 ZN ? N/A O43189 28869966
    114271 5xfp:A (2.3) BS01 ZN ? N/A O43189 28869966
    114272 5xfp:A (2.3) BS02 ZN ? N/A O43189 28869966
    114273 5xfp:A (2.3) BS03 ZN ? N/A O43189 28869966
    114274 5xfp:A (2.3) BS04 ZN ? N/A O43189 28869966
    114275 5xfp:B (2.3) BS03 ZN ? N/A O43189 28869966
    114276 5xfp:B (2.3) BS04 ZN ? N/A O43189 28869966
    114277 5xfp:B (2.3) BS05 ZN ? N/A O43189 28869966
    114278 5xfp:B (2.3) BS06 ZN ? N/A O43189 28869966
    114279 5xfp:E (2.3) BS01 ZN ? N/A O43189 28869966
    114280 5xfp:E (2.3) BS02 ZN ? N/A O43189 28869966
    114281 5xfp:E (2.3) BS03 ZN ? N/A O43189 28869966
    114282 5xfp:E (2.3) BS04 ZN ? N/A O43189 28869966
    114283 5xfq:A (2.4) BS04 ZN ? N/A Q9Z1B8 28869966
    114284 5xfq:A (2.4) BS05 ZN ? N/A Q9Z1B8 28869966
    114285 5xfq:A (2.4) BS06 ZN ? N/A Q9Z1B8 28869966
    114286 5xfq:A (2.4) BS07 ZN ? N/A Q9Z1B8 28869966
    114287 5xfq:B (2.4) BS02 ZN ? N/A Q9Z1B8 28869966
    114288 5xfq:B (2.4) BS03 ZN ? N/A Q9Z1B8 28869966
    114289 5xfq:B (2.4) BS04 ZN ? N/A Q9Z1B8 28869966
    114290 5xfq:B (2.4) BS05 ZN ? N/A Q9Z1B8 28869966
    114291 5xfr:A (2.25) BS02 ZN ? N/A Q9Y483 28869966
    114292 5xfr:A (2.25) BS03 ZN ? N/A Q9Y483 28869966
    114293 5xfr:A (2.25) BS04 ZN ? N/A Q9Y483 28869966
    114294 5xfr:A (2.25) BS05 ZN ? N/A Q9Y483 28869966
    114295 5xfr:B (2.25) BS04 ZN ? N/A Q9Y483 28869966
    114296 5xfr:B (2.25) BS05 ZN ? N/A Q9Y483 28869966
    114297 5xfr:B (2.25) BS06 ZN ? N/A Q9Y483 28869966
    114298 5xfr:B (2.25) BS07 ZN ? N/A Q9Y483 28869966
    114299 5xg3:A (3.5) BS02 MG ? N/A P51834 28689660
    114300 5xg3:A (3.5) BS03 CO ? N/A P51834 28689660
    114301 5xg3:B (3.5) BS03 MG ? N/A P51834 28689660
    114302 5xgd:A (2.8) BS02 MG ? GO:0006355 ... Q9I580 29109186
    114303 5xgk:A (2.8) BS02 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    114304 5xgk:B (2.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    114305 5xgk:C (2.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    114306 5xgk:D (2.8) BS01 FE 1.13.11.27 GO:0003868 ... P93836 31549053
    114307 5xgu:A (1.846) BS01 MG N/A GO:0003676 ... N/A 29036353
    114308 5xgu:B (1.846) BS01 MG N/A GO:0003676 ... N/A 29036353
    114309 5xgw:A (1.85) BS01 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    114310 5xgw:A (1.85) BS02 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    114311 5xgw:B (1.85) BS01 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    114312 5xgw:B (1.85) BS02 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    114313 5xgx:A (2.33) BS01 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    114314 5xgx:A (2.33) BS02 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    114315 5xgx:B (2.33) BS01 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    114316 5xgx:B (2.33) BS02 ZN 3.4.19.- GO:0005737 ... Q484B6 28723955
    114317 5xhc:A (2.75) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    114318 5xhc:C (2.75) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    114319 5xhi:A (1.26) BS01 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    114320 5xhi:A (1.26) BS02 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    114321 5xhm:A (1.7) BS01 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    114322 5xhm:A (1.7) BS02 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    114323 5xhn:A (1.63) BS01 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    114324 5xhn:A (1.63) BS02 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    114325 5xhn:A (1.63) BS03 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    114326 5xho:A (1.73) BS01 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    114327 5xho:A (1.73) BS02 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    114328 5xho:A (1.73) BS03 MG 1.16.3.1 GO:0004322 ... P07798 28739445
    114329 5xhp:E (2.8) BS02 MN ? GO:0000166 ... E8XCX6 N/A
    114330 5xhp:F (2.8) BS02 MN ? GO:0000166 ... E8XCX6 N/A
    114331 5xhs:A (2.19) BS03 ZN 2.3.1.- GO:0036054 ... Q9NXA8 N/A
    114332 5xht:A (-1.00) BS01 ZN ? N/A Q9UPV7 29430827
    114333 5xht:A (-1.00) BS02 ZN ? N/A Q9UPV7 29430827
    114334 5xi5:A (2.81) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    114335 5xi5:C (2.81) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    114336 5xi7:A (2.99) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    114337 5xi7:C (2.99) BS02 CA ? GO:0000226 ... A0A0R4I993 N/A
    114338 5xia:A (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2769749
    114339 5xia:B (2.5) BS02 MG 5.3.1.5 GO:0000287 ... P12070 2769749
    114340 5xil:A (1.9) BS01 ZN 6.1.1.15 GO:0000166 ... Q4QDS0 28867614
    114341 5xil:A (1.9) BS02 MG 6.1.1.15 GO:0000166 ... Q4QDS0 28867614
    114342 5xim:A (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    114343 5xim:B (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    114344 5xim:C (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    114345 5xim:D (2.6) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    114346 5xin:A (2.3) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    114347 5xin:B (2.3) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    114348 5xin:C (2.3) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    114349 5xin:D (2.3) BS02 MG 5.3.1.5 GO:0000287 ... P12851 1610791
    114350 5xio:A (2.46) BS02 ZN 6.1.1.15 GO:0000166 ... Q5CWN3 28867614
    114351 5xio:B (2.46) BS01 ZN 6.1.1.15 GO:0000166 ... Q5CWN3 28867614
    114352 5xiw:A (2.9) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    114353 5xiw:C (2.9) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 29691282
    114354 5xj0:D (4.004) BS01 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 29165680
    114355 5xjb:A (3.1) BS03 MG ? GO:0003777 ... Q922S8 28903043
    114356 5xjb:B (3.1) BS03 MG ? GO:0003777 ... Q922S8 28903043
    114357 5xjc:N (3.6) BS02 ZN ? GO:0000398 ... P41223 28502770
    114358 5xjc:N (3.6) BS03 ZN ? GO:0000398 ... P41223 28502770
    114359 5xjc:N (3.6) BS04 ZN ? GO:0000398 ... P41223 28502770
    114360 5xjc:O (3.6) BS03 ZN ? GO:0000398 ... Q9NW64 28502770
    114361 5xjc:O (3.6) BS04 ZN ? GO:0000398 ... Q9NW64 28502770
    114362 5xjc:Z (3.6) BS02 ZN ? GO:0000375 ... O95391 28502770
    114363 5xjp:A (1.597) BS01 MG ? GO:0000160 ... Q6TA00 28934482
    114364 5xk9:C (2.137) BS01 MG ? GO:0002094 ... M4T4U9 29215779
    114365 5xke:A (2.6) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    114366 5xke:C (2.6) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    114367 5xkf:A (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    114368 5xkf:C (2.8) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    114369 5xkg:A (2.2) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    114370 5xkg:C (2.2) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    114371 5xkh:A (2.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    114372 5xkh:C (2.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    114373 5xkm:A (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    114374 5xkm:B (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    114375 5xkm:C (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    114376 5xkm:D (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    114377 5xkm:E (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    114378 5xkm:F (2.16) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28759228
    114379 5xko:A (1.89) BS01 ZN ? GO:0003824 ... A0QY90 28708393
    114380 5xko:B (1.89) BS01 ZN ? GO:0003824 ... A0QY90 28708393
    114381 5xkp:A (3.0) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    114382 5xkp:B (3.0) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    114383 5xkp:C (3.0) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    114384 5xkp:D (3.0) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    114385 5xkq:A (2.7) BS01 ZN ? GO:0003824 ... A0QY90 28708393
    114386 5xkq:B (2.7) BS01 ZN ? GO:0003824 ... A0QY90 28708393
    114387 5xkq:C (2.7) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    114388 5xkq:D (2.7) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    114389 5xkr:A (1.38) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    114390 5xkr:B (1.38) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    114391 5xkr:C (1.38) BS02 ZN ? GO:0003824 ... A0QY90 28708393
    114392 5xkr:D (1.38) BS01 ZN ? GO:0003824 ... A0QY90 28708393
    114393 5xkt:A (1.8) BS02 NI N/A GO:0003924 ... N/A 29203664
    114394 5xkt:A (1.8) BS03 NI N/A GO:0003924 ... N/A 29203664
    114395 5xkt:B (1.8) BS02 NI N/A GO:0003924 ... N/A 29203664
    114396 5xkt:B (1.8) BS04 NI N/A GO:0003924 ... N/A 29203664
    114397 5xkx:A (1.5) BS01 ZN ? GO:0047869 ... N8X9V6 29106934
    114398 5xky:A (2.303) BS01 ZN ? GO:0047869 ... N8X9V6 29106934
    114399 5xle:L (1.69) BS03 MG 1.12.2.1 GO:0008901 ... P21852 28967475
    114400 5xlf:L (1.71) BS03 MG 1.12.2.1 GO:0008901 ... P21852 28967475

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218