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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    113601 5ws5:c (2.35) BS16 CA ? GO:0005737 ... D0VWR7 28219079
    113602 5ws5:d (2.35) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    113603 5ws5:j (2.35) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    113604 5ws5:o (2.35) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    113605 5ws6:A (2.35) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    113606 5ws6:C (2.35) BS16 CA ? GO:0005737 ... D0VWR7 28219079
    113607 5ws6:D (2.35) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    113608 5ws6:J (2.35) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    113609 5ws6:O (2.35) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    113610 5ws6:a (2.35) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    113611 5ws6:c (2.35) BS16 CA ? GO:0005737 ... D0VWR7 28219079
    113612 5ws6:c (2.35) BS17 CA ? GO:0005737 ... D0VWR7 28219079
    113613 5ws6:d (2.35) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    113614 5ws6:j (2.35) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    113615 5ws6:o (2.35) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    113616 5ws8:A (2.62) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113617 5ws8:B (2.62) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113618 5ws8:C (2.62) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113619 5ws8:D (2.62) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113620 5ws9:A (1.9) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113621 5ws9:B (1.9) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113622 5ws9:C (1.9) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113623 5ws9:D (1.9) BS01 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113624 5wsa:A (2.85) BS02 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113625 5wsa:B (2.85) BS02 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113626 5wsa:C (2.85) BS02 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113627 5wsa:D (2.85) BS02 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113628 5wsb:A (2.25) BS03 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113629 5wsb:B (2.25) BS03 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113630 5wsb:C (2.25) BS03 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113631 5wsb:D (2.25) BS03 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113632 5wsc:A (2.4) BS03 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113633 5wsc:B (2.4) BS03 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113634 5wsc:C (2.4) BS03 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113635 5wsc:D (2.4) BS03 MG 2.7.1.40 GO:0000287 ... P9WKE5 29215013
    113636 5wse:A (1.12) BS01 OS ? GO:0046872 ... Q9X1H0 28340294
    113637 5wse:B (1.12) BS01 OS ? GO:0046872 ... Q9X1H0 28340294
    113638 5wse:C (1.12) BS01 OS ? GO:0046872 ... Q9X1H0 28340294
    113639 5wse:D (1.12) BS01 OS ? GO:0046872 ... Q9X1H0 28340294
    113640 5wsf:A (1.11) BS01 OS ? GO:0046872 ... Q9X1H0 28340294
    113641 5wsf:B (1.11) BS01 OS ? GO:0046872 ... Q9X1H0 28340294
    113642 5wsf:C (1.11) BS01 OS ? GO:0046872 ... Q9X1H0 28340294
    113643 5wsf:D (1.11) BS01 OS ? GO:0046872 ... Q9X1H0 28340294
    113644 5wsg:C (4.0) BS03 MG ? GO:0000244 ... P36048 27980089
    113645 5wsg:Q (4.0) BS02 ZN ? GO:0000398 ... P38241 27980089
    113646 5wsg:Q (4.0) BS03 ZN ? GO:0000398 ... P38241 27980089
    113647 5wsg:R (4.0) BS03 ZN ? GO:0000387 ... Q12046 27980089
    113648 5wsg:T (4.0) BS03 ZN ? GO:0000282 ... P25337 27980089
    113649 5wsg:T (4.0) BS04 ZN ? GO:0000282 ... P25337 27980089
    113650 5wsg:T (4.0) BS05 ZN ? GO:0000282 ... P25337 27980089
    113651 5wsk:A (1.781) BS01 MG 4.1.1.39 GO:0000287 ... P11383 N/A
    113652 5wsk:B (1.781) BS01 MG 4.1.1.39 GO:0000287 ... P11383 N/A
    113653 5wsk:C (1.781) BS01 MG 4.1.1.39 GO:0000287 ... P11383 N/A
    113654 5wsk:D (1.781) BS01 MG 4.1.1.39 GO:0000287 ... P11383 N/A
    113655 5wsl:A (1.5) BS01 CA ? GO:0004252 ... A0A2H4A2Y5 28680127
    113656 5wsl:A (1.5) BS02 CA ? GO:0004252 ... A0A2H4A2Y5 28680127
    113657 5wsl:B (1.5) BS01 CA ? GO:0004252 ... A0A2H4A2Y5 28680127
    113658 5wsl:B (1.5) BS02 CA ? GO:0004252 ... A0A2H4A2Y5 28680127
    113659 5wsl:C (1.5) BS01 CA ? GO:0004252 ... A0A2H4A2Y5 28680127
    113660 5wsl:C (1.5) BS02 CA ? GO:0004252 ... A0A2H4A2Y5 28680127
    113661 5wsv:A (2.33) BS03 CA ? GO:0000086 ... P0DP23 28262393
    113662 5wsv:A (2.33) BS04 CA ? GO:0000086 ... P0DP23 28262393
    113663 5wsv:A (2.33) BS05 CA ? GO:0000086 ... P0DP23 28262393
    113664 5wsv:A (2.33) BS06 CA ? GO:0000086 ... P0DP23 28262393
    113665 5wsv:C (2.33) BS03 CA ? GO:0000086 ... P0DP23 28262393
    113666 5wsv:C (2.33) BS04 CA ? GO:0000086 ... P0DP23 28262393
    113667 5wsv:C (2.33) BS05 CA ? GO:0000086 ... P0DP23 28262393
    113668 5wsv:C (2.33) BS06 CA ? GO:0000086 ... P0DP23 28262393
    113669 5wsz:A (2.565) BS01 CU ? N/A A0A0C5K362 N/A
    113670 5wsz:B (2.565) BS01 CU ? N/A A0A0C5K362 N/A
    113671 5wsz:C (2.565) BS01 CU ? N/A A0A0C5K362 N/A
    113672 5wsz:D (2.565) BS01 CU ? N/A A0A0C5K362 N/A
    113673 5wtd:A (2.501) BS01 FE ? GO:0005515 ... P02787 35690040
    113674 5wtd:A (2.501) BS02 RU ? GO:0005515 ... P02787 35690040
    113675 5wti:Z (2.682) BS04 MG N/A N/A N/A 28374750
    113676 5wti:Z (2.682) BS05 MG N/A N/A N/A 28374750
    113677 5wtl:A (2.298) BS01 CA ? GO:0005509 ... C2M2E7 28807152
    113678 5wtl:A (2.298) BS02 CA ? GO:0005509 ... C2M2E7 28807152
    113679 5wtl:A (2.298) BS03 CA ? GO:0005509 ... C2M2E7 28807152
    113680 5wtl:A (2.298) BS04 CA ? GO:0005509 ... C2M2E7 28807152
    113681 5wtl:A (2.298) BS05 CA ? GO:0005509 ... C2M2E7 28807152
    113682 5wtl:A (2.298) BS06 CA ? GO:0005509 ... C2M2E7 28807152
    113683 5wtl:A (2.298) BS07 CA ? GO:0005509 ... C2M2E7 28807152
    113684 5wtl:A (2.298) BS08 CA ? GO:0005509 ... C2M2E7 28807152
    113685 5wtl:A (2.298) BS09 CA ? GO:0005509 ... C2M2E7 28807152
    113686 5wtl:A (2.298) BS10 CA ? GO:0005509 ... C2M2E7 28807152
    113687 5wtl:A (2.298) BS11 CA ? GO:0005509 ... C2M2E7 28807152
    113688 5wtl:B (2.298) BS01 CA ? GO:0005509 ... C2M2E7 28807152
    113689 5wtl:B (2.298) BS02 CA ? GO:0005509 ... C2M2E7 28807152
    113690 5wtl:B (2.298) BS03 CA ? GO:0005509 ... C2M2E7 28807152
    113691 5wtl:B (2.298) BS04 CA ? GO:0005509 ... C2M2E7 28807152
    113692 5wtl:B (2.298) BS05 CA ? GO:0005509 ... C2M2E7 28807152
    113693 5wtl:B (2.298) BS06 CA ? GO:0005509 ... C2M2E7 28807152
    113694 5wtl:B (2.298) BS07 CA ? GO:0005509 ... C2M2E7 28807152
    113695 5wtl:B (2.298) BS08 CA ? GO:0005509 ... C2M2E7 28807152
    113696 5wtl:B (2.298) BS09 CA ? GO:0005509 ... C2M2E7 28807152
    113697 5wtl:B (2.298) BS10 CA ? GO:0005509 ... C2M2E7 28807152
    113698 5wtl:B (2.298) BS11 CA ? GO:0005509 ... C2M2E7 28807152
    113699 5wtl:C (2.298) BS01 CA ? GO:0005509 ... C2M2E7 28807152
    113700 5wtl:C (2.298) BS02 CA ? GO:0005509 ... C2M2E7 28807152
    113701 5wtl:C (2.298) BS03 CA ? GO:0005509 ... C2M2E7 28807152
    113702 5wtl:C (2.298) BS04 CA ? GO:0005509 ... C2M2E7 28807152
    113703 5wtl:C (2.298) BS05 CA ? GO:0005509 ... C2M2E7 28807152
    113704 5wtl:C (2.298) BS06 CA ? GO:0005509 ... C2M2E7 28807152
    113705 5wtl:C (2.298) BS07 CA ? GO:0005509 ... C2M2E7 28807152
    113706 5wtl:C (2.298) BS08 CA ? GO:0005509 ... C2M2E7 28807152
    113707 5wtl:C (2.298) BS09 CA ? GO:0005509 ... C2M2E7 28807152
    113708 5wtl:C (2.298) BS10 CA ? GO:0005509 ... C2M2E7 28807152
    113709 5wtl:C (2.298) BS11 CA ? GO:0005509 ... C2M2E7 28807152
    113710 5wtl:D (2.298) BS01 CA ? GO:0005509 ... C2M2E7 28807152
    113711 5wtl:D (2.298) BS02 CA ? GO:0005509 ... C2M2E7 28807152
    113712 5wtl:D (2.298) BS03 CA ? GO:0005509 ... C2M2E7 28807152
    113713 5wtl:D (2.298) BS04 CA ? GO:0005509 ... C2M2E7 28807152
    113714 5wtl:D (2.298) BS05 CA ? GO:0005509 ... C2M2E7 28807152
    113715 5wtl:D (2.298) BS06 CA ? GO:0005509 ... C2M2E7 28807152
    113716 5wtl:D (2.298) BS07 CA ? GO:0005509 ... C2M2E7 28807152
    113717 5wtl:D (2.298) BS08 CA ? GO:0005509 ... C2M2E7 28807152
    113718 5wtl:D (2.298) BS09 CA ? GO:0005509 ... C2M2E7 28807152
    113719 5wtl:D (2.298) BS10 CA ? GO:0005509 ... C2M2E7 28807152
    113720 5wu4:A (2.8) BS02 MG 2.7.7.19
    2.7.7.52    		 N/A Q9H6E5 28589955
    113721 5wu4:B (2.8) BS02 MG 2.7.7.19
    2.7.7.52    		 N/A Q9H6E5 28589955
    113722 5wuq:C (2.8) BS01 ZN ? N/A Q45588 28319136
    113723 5wuq:D (2.8) BS01 ZN ? N/A Q45588 28319136
    113724 5wv3:A (2.07) BS01 CA 1.11.1.7 GO:0004601 ... P80025 29174286
    113725 5wv4:A (1.8) BS01 CU ? GO:0005507 ... P19567 N/A
    113726 5wv4:B (1.8) BS01 CU ? GO:0005507 ... P19567 N/A
    113727 5wve:A (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    113728 5wve:C (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    113729 5wve:E (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    113730 5wve:G (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    113731 5wve:I (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    113732 5wve:K (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    113733 5wve:M (4.4) BS02 MG ? GO:0000166 ... O14727 28143931
    113734 5wvo:C (1.997) BS02 ZN 2.1.1.37 N/A P26358 29053958
    113735 5wvu:A (2.6) BS01 ZN 3.4.17.19 GO:0004180 ... Q5SLM3 28161633
    113736 5wvu:B (2.6) BS01 ZN 3.4.17.19 GO:0004180 ... Q5SLM3 28161633
    113737 5wvu:C (2.6) BS01 ZN 3.4.17.19 GO:0004180 ... Q5SLM3 28161633
    113738 5ww3:A (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113739 5ww3:A (2.05) BS02 FE2 ? GO:0003677 ... A0QXB7 28418062
    113740 5ww3:A (2.05) BS03 MG ? GO:0003677 ... A0QXB7 28418062
    113741 5ww3:A (2.05) BS04 FE ? GO:0003677 ... A0QXB7 28418062
    113742 5ww3:B (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113743 5ww3:B (2.05) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    113744 5ww3:B (2.05) BS03 MG ? GO:0003677 ... A0QXB7 28418062
    113745 5ww3:C (2.05) BS01 FE2 ? GO:0003677 ... A0QXB7 28418062
    113746 5ww3:C (2.05) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    113747 5ww3:C (2.05) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    113748 5ww3:D (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113749 5ww3:D (2.05) BS02 FE2 ? GO:0003677 ... A0QXB7 28418062
    113750 5ww4:A (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113751 5ww4:A (2.05) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    113752 5ww4:B (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113753 5ww4:B (2.05) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    113754 5ww4:C (2.05) BS01 MG ? GO:0003677 ... A0QXB7 28418062
    113755 5ww4:C (2.05) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    113756 5ww4:D (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113757 5ww5:A (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113758 5ww5:A (2.04) BS02 FE2 ? GO:0003677 ... A0QXB7 28418062
    113759 5ww5:A (2.04) BS03 MG ? GO:0003677 ... A0QXB7 28418062
    113760 5ww5:B (2.04) BS01 MG ? GO:0003677 ... A0QXB7 28418062
    113761 5ww5:C (2.04) BS01 FE2 ? GO:0003677 ... A0QXB7 28418062
    113762 5ww5:C (2.04) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    113763 5ww5:C (2.04) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    113764 5ww6:A (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113765 5ww6:A (2.04) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    113766 5ww6:B (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113767 5ww6:C (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113768 5ww6:D (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113769 5ww6:D (2.04) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    113770 5ww7:A (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113771 5ww7:A (2.05) BS02 FE2 ? GO:0003677 ... A0QXB7 28418062
    113772 5ww7:A (2.05) BS03 MG ? GO:0003677 ... A0QXB7 28418062
    113773 5ww7:B (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113774 5ww7:B (2.05) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    113775 5ww7:C (2.05) BS01 FE2 ? GO:0003677 ... A0QXB7 28418062
    113776 5ww7:C (2.05) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    113777 5ww7:C (2.05) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    113778 5ww7:D (2.05) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113779 5ww8:A (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113780 5ww8:A (2.04) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    113781 5ww8:A (2.04) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    113782 5ww8:B (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113783 5ww8:B (2.04) BS02 MG ? GO:0003677 ... A0QXB7 28418062
    113784 5ww8:C (2.04) BS01 MG ? GO:0003677 ... A0QXB7 28418062
    113785 5ww8:C (2.04) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    113786 5ww8:D (2.04) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113787 5ww9:A (2.0) BS01 MG ? GO:0003677 ... A0QXB7 28418062
    113788 5ww9:A (2.0) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    113789 5ww9:A (2.0) BS03 FE ? GO:0003677 ... A0QXB7 28418062
    113790 5ww9:B (2.0) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113791 5ww9:C (2.0) BS01 FE ? GO:0003677 ... A0QXB7 28418062
    113792 5ww9:D (2.0) BS01 MG ? GO:0003677 ... A0QXB7 28418062
    113793 5ww9:D (2.0) BS02 FE ? GO:0003677 ... A0QXB7 28418062
    113794 5wwd:A (1.386) BS02 MG 3.6.1.22
    3.6.1.55
    3.6.1.67    		 GO:0000210 ... Q9CA40 29066356
    113795 5wwd:A (1.386) BS03 MG 3.6.1.22
    3.6.1.55
    3.6.1.67    		 GO:0000210 ... Q9CA40 29066356
    113796 5wwd:B (1.386) BS01 MG 3.6.1.22
    3.6.1.55
    3.6.1.67    		 GO:0000210 ... Q9CA40 29066356
    113797 5wwd:B (1.386) BS02 MG 3.6.1.22
    3.6.1.55
    3.6.1.67    		 GO:0000210 ... Q9CA40 29066356
    113798 5wwp:A (3.0) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0005524 ... K0BWD0 28651017
    113799 5wwp:A (3.0) BS02 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0005524 ... K0BWD0 28651017
    113800 5wwp:A (3.0) BS03 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0005524 ... K0BWD0 28651017
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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