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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    113401 5wmb:A (2.25) BS05 MG 2.7.7.- GO:0003684 ... P12689 29042535
    113402 5wmm:A (2.9) BS03 CA ? N/A Q333U7 29556104
    113403 5wmm:A (2.9) BS04 CA ? N/A Q333U7 29556104
    113404 5wms:A (1.6) BS01 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113405 5wms:A (1.6) BS02 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113406 5wms:G (1.6) BS01 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113407 5wms:G (1.6) BS02 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113408 5wms:Q (1.6) BS01 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113409 5wms:Q (1.6) BS02 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113410 5wms:S (1.6) BS01 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113411 5wms:S (1.6) BS02 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113412 5wmt:B (2.748) BS01 MG ? GO:0005524 ... P41148 29528635
    113413 5wmt:C (2.748) BS01 MG ? GO:0005524 ... P41148 29528635
    113414 5wn5:A (2.2) BS01 MN 3.1.11.2
    3.1.21.-    		 GO:0003677 ... P27695 29374164
    113415 5wn5:B (2.2) BS04 MN 3.1.11.2
    3.1.21.-    		 GO:0003677 ... P27695 29374164
    113416 5wnb:H (2.4) BS02 ZN N/A N/A N/A 29523582
    113417 5wnb:H (2.4) BS03 ZN N/A N/A N/A 29523582
    113418 5wnb:I (2.4) BS02 ZN N/A N/A N/A 29523582
    113419 5wnb:L (2.4) BS02 ZN N/A N/A N/A 29523582
    113420 5wnb:L (2.4) BS03 ZN N/A N/A N/A 29523582
    113421 5wnb:L (2.4) BS04 ZN N/A N/A N/A 29523582
    113422 5wnb:M (2.4) BS02 ZN N/A N/A N/A 29523582
    113423 5wnb:M (2.4) BS03 ZN N/A N/A N/A 29523582
    113424 5wni:A (2.65) BS01 MG 2.7.11.1 GO:0004672 ... Q9ERK0 29706531
    113425 5wno:A (2.386) BS02 MG 2.7.10.1 GO:0004672 ... P24348 29358026
    113426 5wnp:D (3.3) BS02 MG ? GO:0003723 ... P80373 29459784
    113427 5wnp:F (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 29459784
    113428 5wnp:M (3.3) BS02 MG ? GO:0000049 ... P80377 29459784
    113429 5wnp:N (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    113430 5wnp:Q (3.3) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    113431 5wnp:S (3.3) BS02 MG ? GO:0003723 ... Q5SHP2 29459784
    113432 5wnp:T (3.3) BS02 MG ? GO:0003723 ... P80380 29459784
    113433 5wnq:B (3.5) BS02 MG ? GO:0003735 ... P80371 29459784
    113434 5wnq:B (3.5) BS03 MG ? GO:0003735 ... P80371 29459784
    113435 5wnq:C (3.5) BS02 MG ? GO:0003676 ... P80372 29459784
    113436 5wnq:C (3.5) BS03 MG ? GO:0003676 ... P80372 29459784
    113437 5wnq:C (3.5) BS04 MG ? GO:0003676 ... P80372 29459784
    113438 5wnq:D (3.5) BS02 MG ? GO:0003723 ... P80373 29459784
    113439 5wnq:J (3.5) BS02 MG ? GO:0000049 ... Q5SHN7 29459784
    113440 5wnq:L (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 29459784
    113441 5wnq:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    113442 5wnq:Q (3.5) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    113443 5wnr:B (3.5) BS02 MG ? GO:0003735 ... P80371 29459784
    113444 5wnr:B (3.5) BS03 MG ? GO:0003735 ... P80371 29459784
    113445 5wnr:C (3.5) BS02 MG ? GO:0003676 ... P80372 29459784
    113446 5wnr:C (3.5) BS03 MG ? GO:0003676 ... P80372 29459784
    113447 5wnr:C (3.5) BS04 MG ? GO:0003676 ... P80372 29459784
    113448 5wnr:D (3.5) BS02 MG ? GO:0003723 ... P80373 29459784
    113449 5wnr:L (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 29459784
    113450 5wnr:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    113451 5wnr:Q (3.5) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    113452 5wns:B (3.5) BS02 MG ? GO:0003735 ... P80371 29459784
    113453 5wns:B (3.5) BS03 MG ? GO:0003735 ... P80371 29459784
    113454 5wns:C (3.5) BS02 MG ? GO:0003676 ... P80372 29459784
    113455 5wns:C (3.5) BS03 MG ? GO:0003676 ... P80372 29459784
    113456 5wns:C (3.5) BS04 MG ? GO:0003676 ... P80372 29459784
    113457 5wns:D (3.5) BS02 MG ? GO:0003723 ... P80373 29459784
    113458 5wns:J (3.5) BS02 MG ? GO:0000049 ... Q5SHN7 29459784
    113459 5wns:L (3.5) BS02 MG ? GO:0000049 ... Q5SHN3 29459784
    113460 5wns:N (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    113461 5wns:Q (3.5) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    113462 5wnt:D (3.3) BS02 MG ? GO:0003723 ... P80373 29459784
    113463 5wnt:F (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 29459784
    113464 5wnt:M (3.3) BS02 MG ? GO:0000049 ... P80377 29459784
    113465 5wnt:N (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    113466 5wnt:Q (3.3) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    113467 5wnt:S (3.3) BS02 MG ? GO:0003723 ... Q5SHP2 29459784
    113468 5wnt:T (3.3) BS02 MG ? GO:0003723 ... P80380 29459784
    113469 5wnu:D (3.4) BS02 ZN ? GO:0003723 ... P80373 29459784
    113470 5wnu:D (3.4) BS03 MG ? GO:0003723 ... P80373 29459784
    113471 5wnu:F (3.4) BS02 MG ? GO:0003735 ... Q5SLP8 29459784
    113472 5wnu:N (3.4) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    113473 5wnu:Q (3.4) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    113474 5wnu:S (3.4) BS02 MG ? GO:0003723 ... Q5SHP2 29459784
    113475 5wnu:T (3.4) BS02 MG ? GO:0003723 ... P80380 29459784
    113476 5wnv:D (3.3) BS02 ZN ? GO:0003723 ... P80373 29459784
    113477 5wnv:D (3.3) BS03 MG ? GO:0003723 ... P80373 29459784
    113478 5wnv:F (3.3) BS02 MG ? GO:0003735 ... Q5SLP8 29459784
    113479 5wnv:M (3.3) BS02 MG ? GO:0000049 ... P80377 29459784
    113480 5wnv:N (3.3) BS02 ZN ? GO:0003735 ... P0DOY6 29459784
    113481 5wnv:Q (3.3) BS02 MG ? GO:0003735 ... P0DOY7 29459784
    113482 5wnv:S (3.3) BS02 MG ? GO:0003723 ... Q5SHP2 29459784
    113483 5wnv:T (3.3) BS02 MG ? GO:0003723 ... P80380 29459784
    113484 5wnw:B (1.79) BS01 ZN ? GO:0042597 ... P77754 27239796
    113485 5wnx:A (2.55) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28862449
    113486 5wnx:A (2.55) BS06 CA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28862449
    113487 5wny:A (2.1) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28862449
    113488 5wny:A (2.1) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28862449
    113489 5wnz:A (2.2) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28862449
    113490 5wnz:A (2.2) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28862449
    113491 5wo0:A (1.6) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28862449
    113492 5wo0:A (1.6) BS06 CA 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 28862449
    113493 5wo1:B (1.87) BS01 ZN ? GO:0042597 ... P77754 27239796
    113494 5wo1:B (1.87) BS02 ZN ? GO:0042597 ... P77754 27239796
    113495 5wo2:B (1.769) BS01 ZN ? GO:0042597 ... P77754 27239796
    113496 5wo3:B (1.87) BS01 ZN ? GO:0042597 ... P77754 27239796
    113497 5wob:B (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    113498 5wob:D (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    113499 5wob:E (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    113500 5wob:F (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    113501 5wob:G (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    113502 5wob:H (3.95) BS02 ZN 3.4.24.56 GO:0001618 ... P14735 29596046
    113503 5wp9:A (4.22) BS01 MG 3.6.5.5 GO:0000266 ... O00429 29899447
    113504 5wp9:C (4.22) BS01 MG 3.6.5.5 GO:0000266 ... O00429 29899447
    113505 5wp9:E (4.22) BS01 MG 3.6.5.5 GO:0000266 ... O00429 29899447
    113506 5wp9:G (4.22) BS01 MG 3.6.5.5 GO:0000266 ... O00429 29899447
    113507 5wp9:I (4.22) BS01 MG 3.6.5.5 GO:0000266 ... O00429 29899447
    113508 5wp9:K (4.22) BS01 MG 3.6.5.5 GO:0000266 ... O00429 29899447
    113509 5wp9:M (4.22) BS01 MG 3.6.5.5 GO:0000266 ... O00429 29899447
    113510 5wp9:O (4.22) BS01 MG 3.6.5.5 GO:0000266 ... O00429 29899447
    113511 5wpb:A (1.55) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    113512 5wpb:A (1.55) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    113513 5wpb:A (1.55) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    113514 5wpl:A (2.15) BS04 CA 3.6.5.2 GO:0003924 ... P01112 29282294
    113515 5wpl:G (2.15) BS04 CA 3.6.5.2 GO:0003924 ... P01112 29282294
    113516 5wpl:J (2.15) BS04 CA 3.6.5.2 GO:0003924 ... P01112 29282294
    113517 5wpl:L (2.15) BS02 CA N/A N/A N/A 29282294
    113518 5wpm:A (1.72) BS02 MG 3.6.5.2 GO:0003924 ... P01116 29282294
    113519 5wpn:A (1.57) BS01 ZN 1.16.3.1 GO:0004322 ... A0A075ML49 29127253
    113520 5wpn:A (1.57) BS02 ZN 1.16.3.1 GO:0004322 ... A0A075ML49 29127253
    113521 5wpn:A (1.57) BS03 ZN 1.16.3.1 GO:0004322 ... A0A075ML49 29127253
    113522 5wpn:A (1.57) BS04 ZN 1.16.3.1 GO:0004322 ... A0A075ML49 29127253
    113523 5wpn:A (1.57) BS05 ZN 1.16.3.1 GO:0004322 ... A0A075ML49 29127253
    113524 5wpp:A (1.7) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    113525 5wpp:A (1.7) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    113526 5wpp:A (1.7) BS03 CA ? GO:0046872 ... A0A076NBW8 29531360
    113527 5wpp:B (1.7) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    113528 5wpp:B (1.7) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    113529 5wpp:B (1.7) BS03 CA ? GO:0046872 ... A0A076NBW8 29531360
    113530 5wpr:A (1.49) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    113531 5wpr:A (1.49) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    113532 5wps:A (1.389) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    113533 5wps:A (1.389) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    113534 5wpu:A (1.39) BS01 CA ? GO:0046872 ... A0A076NBW8 29531360
    113535 5wpu:A (1.39) BS02 CA ? GO:0046872 ... A0A076NBW8 29531360
    113536 5wq0:A (2.604) BS01 MG ? GO:0000160 ... A0A1W2VN00 28281198
    113537 5wq0:B (2.604) BS01 MG ? GO:0000160 ... A0A1W2VN00 28281198
    113538 5wq0:C (2.604) BS01 MG ? GO:0000160 ... A0A1W2VN00 28281198
    113539 5wq0:D (2.604) BS01 MG ? GO:0000160 ... A0A1W2VN01 28281198
    113540 5wq0:E (2.604) BS01 MG ? GO:0000160 ... A0A1W2VN00 28281198
    113541 5wq0:F (2.604) BS01 MG ? GO:0000160 ... A0A1W2VN00 28281198
    113542 5wq0:G (2.604) BS01 MG ? GO:0000160 ... A0A1W2VN00 28281198
    113543 5wqa:A (2.3) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 28159622
    113544 5wqa:B (2.3) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 28159622
    113545 5wqf:A (2.001) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    113546 5wqg:A (2.3) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    113547 5wqg:B (2.3) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    113548 5wqh:A (2.102) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    113549 5wqh:A (2.102) BS02 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    113550 5wqh:B (2.102) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    113551 5wqi:A (1.899) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    113552 5wqi:A (1.899) BS02 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    113553 5wqi:D (1.899) BS01 CA 5.-.-.- GO:0016114 ... Q0C8A2 28759016
    113554 5wr2:A (2.0) BS02 ZN 3.4.24.27 GO:0004222 ... P43133 28777085
    113555 5wr2:A (2.0) BS03 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113556 5wr2:A (2.0) BS04 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113557 5wr2:A (2.0) BS05 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113558 5wr2:A (2.0) BS06 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113559 5wr3:A (2.1) BS02 ZN 3.4.24.27 GO:0004222 ... P43133 28777085
    113560 5wr3:A (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113561 5wr3:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113562 5wr3:A (2.1) BS05 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113563 5wr3:A (2.1) BS06 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113564 5wr4:A (2.1) BS01 ZN 3.4.24.27 GO:0004222 ... P43133 28777085
    113565 5wr4:A (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113566 5wr4:A (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113567 5wr4:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113568 5wr4:A (2.1) BS05 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113569 5wr5:A (1.9) BS02 ZN 3.4.24.27 GO:0004222 ... P43133 28777085
    113570 5wr5:A (1.9) BS03 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113571 5wr5:A (1.9) BS04 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113572 5wr5:A (1.9) BS05 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113573 5wr5:A (1.9) BS06 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113574 5wr6:A (2.3) BS02 ZN 3.4.24.27 GO:0004222 ... P43133 28777085
    113575 5wr6:A (2.3) BS03 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113576 5wr6:A (2.3) BS04 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113577 5wr6:A (2.3) BS05 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113578 5wr6:A (2.3) BS06 CA 3.4.24.27 GO:0004222 ... P43133 28777085
    113579 5wrc:A (1.5) BS01 PR 3.4.21.64 GO:0004252 ... P06873 28386083
    113580 5wrc:A (1.5) BS02 PR 3.4.21.64 GO:0004252 ... P06873 28386083
    113581 5wri:A (1.6) BS04 MG 2.8.2.20 GO:0006478 ... O60507 28821720
    113582 5wri:B (1.6) BS04 MG 2.8.2.20 GO:0006478 ... O60507 28821720
    113583 5wri:B (1.6) BS05 ZN 2.8.2.20 GO:0006478 ... O60507 28821720
    113584 5wrj:A (2.31) BS04 MG 2.8.2.20 GO:0006478 ... O60507 28821720
    113585 5wrj:B (2.31) BS04 MG 2.8.2.20 GO:0006478 ... O60507 28821720
    113586 5wrj:C (2.31) BS03 MG 2.8.2.20 GO:0006478 ... O60507 28821720
    113587 5wrj:D (2.31) BS03 MG 2.8.2.20 GO:0006478 ... O60507 28821720
    113588 5wrt:A (2.348) BS01 MG 3.6.1.1 GO:0000287 ... Q4VUZ3 28701714
    113589 5wrt:B (2.348) BS01 MG 3.6.1.1 GO:0000287 ... Q4VUZ3 28701714
    113590 5ws2:A (2.398) BS02 ZN N/A GO:0003723 ... N/A 28795788
    113591 5ws2:A (2.398) BS03 ZN N/A GO:0003723 ... N/A 28795788
    113592 5ws2:B (2.398) BS02 ZN N/A GO:0003723 ... N/A 28795788
    113593 5ws2:B (2.398) BS03 ZN N/A GO:0003723 ... N/A 28795788
    113594 5ws5:A (2.35) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    113595 5ws5:C (2.35) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    113596 5ws5:D (2.35) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28219079
    113597 5ws5:J (2.35) BS01 MG ? GO:0009523 ... Q7DGD4 28219079
    113598 5ws5:O (2.35) BS01 CA ? GO:0009523 ... D0VWR2 28219079
    113599 5ws5:a (2.35) BS01 FE2 1.10.3.9 GO:0005506 ... P51765 28219079
    113600 5ws5:c (2.35) BS15 CA ? GO:0005737 ... D0VWR7 28219079
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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