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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    113201 5wit:15 (2.6) BS02 MG ? GO:0003735 ... P80339 28934499
    113202 5wit:15 (2.6) BS03 MG ? GO:0003735 ... P80339 28934499
    113203 5wit:15 (2.6) BS04 MG ? GO:0003735 ... P80339 28934499
    113204 5wit:15 (2.6) BS05 MG ? GO:0003735 ... P80339 28934499
    113205 5wit:15 (2.6) BS06 ZN ? GO:0003735 ... P80339 28934499
    113206 5wit:15 (2.6) BS07 MG ? GO:0003735 ... P80339 28934499
    113207 5wit:16 (2.6) BS02 MG ? GO:0000049 ... P35871 28934499
    113208 5wit:16 (2.6) BS03 ZN ? GO:0000049 ... P35871 28934499
    113209 5wit:16 (2.6) BS04 MG ? GO:0000049 ... P35871 28934499
    113210 5wit:17 (2.6) BS02 MG ? GO:0003735 ... P80340 28934499
    113211 5wit:17 (2.6) BS03 MG ? GO:0003735 ... P80340 28934499
    113212 5wit:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 28934499
    113213 5wit:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 28934499
    113214 5wit:19 (2.6) BS02 MG ? GO:0003735 ... Q5SHR2 28934499
    113215 5wit:19 (2.6) BS03 ZN ? GO:0003735 ... Q5SHR2 28934499
    113216 5wit:1D (2.6) BS03 MG ? GO:0002181 ... P60405 28934499
    113217 5wit:1D (2.6) BS04 MG ? GO:0002181 ... P60405 28934499
    113218 5wit:1D (2.6) BS05 MG ? GO:0002181 ... P60405 28934499
    113219 5wit:1D (2.6) BS06 MG ? GO:0002181 ... P60405 28934499
    113220 5wit:1D (2.6) BS07 MG ? GO:0002181 ... P60405 28934499
    113221 5wit:1D (2.6) BS08 MG ? GO:0002181 ... P60405 28934499
    113222 5wit:1D (2.6) BS09 MG ? GO:0002181 ... P60405 28934499
    113223 5wit:1D (2.6) BS10 MG ? GO:0002181 ... P60405 28934499
    113224 5wit:1D (2.6) BS11 MG ? GO:0002181 ... P60405 28934499
    113225 5wit:1D (2.6) BS12 MG ? GO:0002181 ... P60405 28934499
    113226 5wit:1D (2.6) BS13 MG ? GO:0002181 ... P60405 28934499
    113227 5wit:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 28934499
    113228 5wit:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 28934499
    113229 5wit:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 28934499
    113230 5wit:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 28934499
    113231 5wit:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 28934499
    113232 5wit:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 28934499
    113233 5wit:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 28934499
    113234 5wit:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 28934499
    113235 5wit:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 28934499
    113236 5wit:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 28934499
    113237 5wit:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 28934499
    113238 5wit:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 28934499
    113239 5wit:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 28934499
    113240 5wit:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 28934499
    113241 5wit:1F (2.6) BS11 MG ? GO:0003735 ... Q5SHN9 28934499
    113242 5wit:1F (2.6) BS12 MG ? GO:0003735 ... Q5SHN9 28934499
    113243 5wit:1F (2.6) BS13 MG ? GO:0003735 ... Q5SHN9 28934499
    113244 5wit:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 28934499
    113245 5wit:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 28934499
    113246 5wit:1N (2.6) BS02 MG ? GO:0003729 ... P60488 28934499
    113247 5wit:1N (2.6) BS03 MG ? GO:0003729 ... P60488 28934499
    113248 5wit:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 28934499
    113249 5wit:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 28934499
    113250 5wit:1O (2.6) BS05 MG ? GO:0003735 ... Q5SHP8 28934499
    113251 5wit:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 28934499
    113252 5wit:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 28934499
    113253 5wit:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 28934499
    113254 5wit:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 28934499
    113255 5wit:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 28934499
    113256 5wit:1P (2.6) BS07 MG ? GO:0003735 ... Q5SHQ7 28934499
    113257 5wit:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 28934499
    113258 5wit:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 28934499
    113259 5wit:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 28934499
    113260 5wit:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 28934499
    113261 5wit:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 28934499
    113262 5wit:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 28934499
    113263 5wit:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 28934499
    113264 5wit:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 28934499
    113265 5wit:1U (2.6) BS02 MG ? GO:0000027 ... P60491 28934499
    113266 5wit:1U (2.6) BS03 MG ? GO:0000027 ... P60491 28934499
    113267 5wit:1U (2.6) BS04 MG ? GO:0000027 ... P60491 28934499
    113268 5wit:1U (2.6) BS05 MG ? GO:0000027 ... P60491 28934499
    113269 5wit:1U (2.6) BS06 MG ? GO:0000027 ... P60491 28934499
    113270 5wit:1U (2.6) BS07 MG ? GO:0000027 ... P60491 28934499
    113271 5wit:1U (2.6) BS08 MG ? GO:0000027 ... P60491 28934499
    113272 5wit:1V (2.6) BS02 MG ? GO:0003723 ... P60492 28934499
    113273 5wit:1V (2.6) BS03 MG ? GO:0003723 ... P60492 28934499
    113274 5wit:1V (2.6) BS04 MG ? GO:0003723 ... P60492 28934499
    113275 5wit:1V (2.6) BS05 MG ? GO:0003723 ... P60492 28934499
    113276 5wit:1V (2.6) BS06 MG ? GO:0003723 ... P60492 28934499
    113277 5wit:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 28934499
    113278 5wit:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 28934499
    113279 5wit:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 28934499
    113280 5wit:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 28934499
    113281 5wit:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 28934499
    113282 5wit:1W (2.6) BS07 MG ? GO:0003735 ... Q5SHP3 28934499
    113283 5wit:1X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 28934499
    113284 5wit:1X (2.6) BS03 MG ? GO:0000027 ... Q5SHP0 28934499
    113285 5wit:1X (2.6) BS04 MG ? GO:0000027 ... Q5SHP0 28934499
    113286 5wit:1X (2.6) BS05 MG ? GO:0000027 ... Q5SHP0 28934499
    113287 5wit:1X (2.6) BS06 MG ? GO:0000027 ... Q5SHP0 28934499
    113288 5wit:1Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 28934499
    113289 5wit:1Y (2.6) BS03 MG ? GO:0003723 ... Q5SHP9 28934499
    113290 5wit:1b (2.6) BS02 MG ? GO:0003735 ... P80371 28934499
    113291 5wit:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 28934499
    113292 5wit:1e (2.6) BS03 MG ? GO:0003723 ... Q5SHQ5 28934499
    113293 5wit:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 28934499
    113294 5wit:1k (2.6) BS02 MG ? GO:0003735 ... P80376 28934499
    113295 5wit:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 28934499
    113296 5wit:1m (2.6) BS04 MG ? GO:0000049 ... P80377 28934499
    113297 5wit:1m (2.6) BS05 MG ? GO:0000049 ... P80377 28934499
    113298 5wit:1n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 28934499
    113299 5wit:1t (2.6) BS02 MG ? GO:0003723 ... P80380 28934499
    113300 5wit:21 (2.6) BS03 MG ? GO:0003735 ... P60494 28934499
    113301 5wit:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 28934499
    113302 5wit:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 28934499
    113303 5wit:25 (2.6) BS02 ZN ? GO:0003735 ... P80339 28934499
    113304 5wit:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 28934499
    113305 5wit:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 28934499
    113306 5wit:2D (2.6) BS03 MG ? GO:0002181 ... P60405 28934499
    113307 5wit:2D (2.6) BS04 MG ? GO:0002181 ... P60405 28934499
    113308 5wit:2D (2.6) BS05 MG ? GO:0002181 ... P60405 28934499
    113309 5wit:2D (2.6) BS06 MG ? GO:0002181 ... P60405 28934499
    113310 5wit:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 28934499
    113311 5wit:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 28934499
    113312 5wit:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 28934499
    113313 5wit:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 28934499
    113314 5wit:2F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 28934499
    113315 5wit:2G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 28934499
    113316 5wit:2P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 28934499
    113317 5wit:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 28934499
    113318 5wit:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 28934499
    113319 5wit:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 28934499
    113320 5wit:2R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 28934499
    113321 5wit:2U (2.6) BS02 MG ? GO:0000027 ... P60491 28934499
    113322 5wit:2U (2.6) BS03 MG ? GO:0000027 ... P60491 28934499
    113323 5wit:2V (2.6) BS02 MG ? GO:0003723 ... P60492 28934499
    113324 5wit:2V (2.6) BS03 MG ? GO:0003723 ... P60492 28934499
    113325 5wit:2V (2.6) BS04 MG ? GO:0003723 ... P60492 28934499
    113326 5wit:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 28934499
    113327 5wit:2X (2.6) BS02 MG ? GO:0000027 ... Q5SHP0 28934499
    113328 5wit:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 28934499
    113329 5wit:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 28934499
    113330 5wit:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 28934499
    113331 5wit:2k (2.6) BS02 MG ? GO:0003735 ... P80376 28934499
    113332 5wit:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 28934499
    113333 5wit:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 28934499
    113334 5wit:2q (2.6) BS03 MG ? GO:0003735 ... P0DOY7 28934499
    113335 5wit:2t (2.6) BS02 MG ? GO:0003723 ... P80380 28934499
    113336 5wiz:A (1.96) BS01 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113337 5wiz:A (1.96) BS02 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113338 5wiz:G (1.96) BS01 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113339 5wiz:G (1.96) BS02 ZN ? GO:0008270 ... A0A060GYS1 N/A
    113340 5wj0:A (1.65) BS01 ZN ? GO:0008270 ... A0A060GZX0 N/A
    113341 5wj0:A (1.65) BS02 ZN ? GO:0008270 ... A0A060GZX0 N/A
    113342 5wj0:G (1.65) BS01 ZN ? GO:0008270 ... A0A060GZX0 N/A
    113343 5wj0:G (1.65) BS02 ZN ? GO:0008270 ... A0A060GZX0 N/A
    113344 5wj1:A (2.522) BS01 MG 2.2.1.6 GO:0000287 ... P17597 29440497
    113345 5wj8:A (1.86) BS01 CA ? GO:0005509 ... Q9H251 30033219
    113346 5wj8:A (1.86) BS02 CA ? GO:0005509 ... Q9H251 30033219
    113347 5wj8:A (1.86) BS03 CA ? GO:0005509 ... Q9H251 30033219
    113348 5wj8:A (1.86) BS04 CA ? GO:0005509 ... Q9H251 30033219
    113349 5wja:A (2.3) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 30271955
    113350 5wja:A (2.3) BS02 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 30271955
    113351 5wja:D (2.3) BS01 CU 1.14.17.3
    4.3.2.5    		 GO:0003824 ... P14925 30271955
    113352 5wjg:A (1.5) BS01 CA 3.4.21.64 GO:0004252 ... P06873 30289409
    113353 5wjh:A (1.63) BS01 CA 3.4.21.64 GO:0004252 ... P06873 30289409
    113354 5wjm:A (2.9) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    113355 5wjm:A (2.9) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    113356 5wjm:A (2.9) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    113357 5wjm:A (2.9) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    113358 5wjm:A (2.9) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    113359 5wjm:A (2.9) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    113360 5wjq:D (2.794) BS03 ZN ? N/A E9PYI1 29551271
    113361 5wjq:D (2.794) BS04 ZN ? N/A E9PYI1 29551271
    113362 5wjq:D (2.794) BS05 ZN ? N/A E9PYI1 29551271
    113363 5wjq:D (2.794) BS06 ZN ? N/A E9PYI1 29551271
    113364 5wjq:D (2.794) BS07 ZN ? N/A E9PYI1 29551271
    113365 5wjq:D (2.794) BS08 ZN ? N/A E9PYI1 29551271
    113366 5wjq:D (2.794) BS09 ZN ? N/A E9PYI1 29551271
    113367 5wjq:D (2.794) BS10 ZN ? N/A E9PYI1 29551271
    113368 5wjq:D (2.794) BS11 ZN ? N/A E9PYI1 29551271
    113369 5wjq:D (2.794) BS12 ZN ? N/A E9PYI1 29551271
    113370 5wjr:A (1.7) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    113371 5wjr:A (1.7) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    113372 5wk0:A (1.335) BS01 NI ? GO:0016740 ... A0A2C9TMM3 29417696
    113373 5wkc:A (2.334) BS01 MG 2.2.1.6 GO:0000287 ... P07342 29440497
    113374 5wkc:B (2.334) BS01 MG 2.2.1.6 GO:0000287 ... P07342 29440497
    113375 5wkc:D (2.334) BS03 MG 2.2.1.6 GO:0000287 ... P07342 29440497
    113376 5wkc:E (2.334) BS03 MG 2.2.1.6 GO:0000287 ... P07342 29440497
    113377 5wlc:SL (3.8) BS03 ZN ? GO:0000447 ... Q05498 28945246
    113378 5wle:A (1.952) BS02 ZN 3.6.-.- GO:0048188 ... Q9VG78 28919441
    113379 5wle:A (1.952) BS03 ZN 3.6.-.- GO:0048188 ... Q9VG78 28919441
    113380 5wlf:A (1.4) BS01 ZN 3.6.-.- GO:0048188 ... Q9VG78 28919441
    113381 5wlf:A (1.4) BS02 ZN 3.6.-.- GO:0048188 ... Q9VG78 28919441
    113382 5wlr:A (1.49) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    113383 5wlt:A (1.57) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29851481
    113384 5wlu:A (1.39) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    113385 5wlv:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29851481
    113386 5wlw:D (3.317) BS01 ZN ? GO:0005506 ... Q9H1K1 29097656
    113387 5wlw:H (3.317) BS01 ZN ? GO:0005506 ... Q9H1K1 29097656
    113388 5wly:A (2.0) BS01 MN 3.6.1.54 GO:0005737 ... P43341 29626094
    113389 5wly:A (2.0) BS02 MN 3.6.1.54 GO:0005737 ... P43341 29626094
    113390 5wm1:A (1.85) BS03 MG 2.7.7.- GO:0003684 ... P12689 29042535
    113391 5wm1:A (1.85) BS04 MG 2.7.7.- GO:0003684 ... P12689 29042535
    113392 5wm1:A (1.85) BS05 MG 2.7.7.- GO:0003684 ... P12689 29042535
    113393 5wm3:A (1.679) BS02 MG ? GO:0000166 ... A0A140DJY3 29742306
    113394 5wm4:A (1.781) BS02 MG ? GO:0000166 ... A0A140DJY3 29742306
    113395 5wm6:A (2.0) BS02 MG ? GO:0000166 ... A0A140DJY3 29742306
    113396 5wm8:A (1.92) BS03 MG 2.7.7.- GO:0003684 ... P12689 29042535
    113397 5wm8:A (1.92) BS04 MG 2.7.7.- GO:0003684 ... P12689 29042535
    113398 5wm8:A (1.92) BS05 MG 2.7.7.- GO:0003684 ... P12689 29042535
    113399 5wmb:A (2.25) BS03 MG 2.7.7.- GO:0003684 ... P12689 29042535
    113400 5wmb:A (2.25) BS04 MG 2.7.7.- GO:0003684 ... P12689 29042535
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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