Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    113001 5wg6:C (3.901) BS06 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    113002 5wg6:C (3.901) BS07 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    113003 5wg7:A (1.45) BS05 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29266943
    113004 5wg8:A (1.65) BS01 MN 3.1.3.16 GO:0016787 ... P53041 30679389
    113005 5wg8:A (1.65) BS02 MN 3.1.3.16 GO:0016787 ... P53041 30679389
    113006 5wg9:A (2.3) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    113007 5wg9:A (2.3) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    113008 5wgi:A (1.05) BS01 ZN ? N/A F8W4B7 29203661
    113009 5wgk:A (1.822) BS01 ZN ? N/A F8W4B7 29203661
    113010 5wgl:A (1.7) BS01 ZN ? N/A F8W4B7 29203661
    113011 5wgl:B (1.7) BS01 ZN ? N/A F8W4B7 29203661
    113012 5wgm:A (1.75) BS01 ZN ? N/A F8W4B7 29203661
    113013 5wgm:B (1.75) BS01 ZN ? N/A F8W4B7 29203661
    113014 5wgm:C (1.75) BS01 ZN ? N/A F8W4B7 29203661
    113015 5wgp:A (1.53) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29266943
    113016 5wgr:A (2.362) BS02 ZN 1.14.-.- GO:0003824 ... L0E155 28777910
    113017 5wgs:A (2.34) BS02 ZN 1.14.-.- GO:0003824 ... L0E155 28777910
    113018 5wgt:A (2.093) BS02 ZN 1.14.-.- GO:0003824 ... L0E155 28777910
    113019 5wgu:A (2.052) BS02 ZN 1.14.-.- GO:0003824 ... L0E155 28777910
    113020 5wgv:A (2.3) BS02 ZN 1.14.-.- GO:0003824 ... L0E155 28777910
    113021 5wgw:A (2.092) BS02 ZN 1.14.-.- GO:0003824 ... L0E155 28777910
    113022 5wgx:A (1.973) BS02 ZN 1.14.-.- GO:0003824 ... L0E155 28777910
    113023 5wgy:A (2.0) BS02 ZN 1.14.-.- GO:0003824 ... L0E155 28777910
    113024 5wgz:A (2.041) BS02 ZN 1.14.-.- GO:0003824 ... L0E155 28777910
    113025 5wh5:A (1.8) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 29975048
    113026 5wh5:A (1.8) BS03 MG 3.1.4.53 GO:0004114 ... Q08499 29975048
    113027 5wh5:B (1.8) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 29975048
    113028 5wh6:A (1.6) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 29975048
    113029 5wh6:A (1.6) BS03 MG 3.1.4.53 GO:0004114 ... Q08499 29975048
    113030 5wh6:B (1.6) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 29975048
    113031 5wha:A (2.04) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    113032 5wha:D (2.04) BS03 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    113033 5wha:G (2.04) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    113034 5wha:I (2.04) BS02 CA N/A N/A N/A 29282294
    113035 5wha:J (2.04) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    113036 5wha:L (2.04) BS02 CA N/A N/A N/A 29282294
    113037 5whb:A (2.18) BS03 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    113038 5whb:C (2.18) BS01 CA N/A N/A N/A 29282294
    113039 5whb:D (2.18) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    113040 5whb:F (2.18) BS01 CA N/A N/A N/A 29282294
    113041 5whe:A (1.91) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    113042 5whe:D (1.91) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    113043 5whe:F (1.91) BS01 CA N/A N/A N/A 29282294
    113044 5whe:G (1.91) BS02 CA 3.6.5.2 GO:0003924 ... P01116 29282294
    113045 5whg:A (2.7) BS01 ZN 3.1.-.- N/A Q04311 29149595
    113046 5whm:A (1.95) BS01 CA N/A GO:0003677 ... N/A 29567835
    113047 5whv:F (2.303) BS01 CA ? N/A Q404H3 28993610
    113048 5whw:A (1.71) BS01 CA 3.4.21.64 GO:0004252 ... P06873 30289409
    113049 5whw:A (1.71) BS02 CA 3.4.21.64 GO:0004252 ... P06873 30289409
    113050 5why:A (2.692) BS05 CA ? GO:0003824 ... A3DDW1 28704043
    113051 5why:B (2.692) BS05 CA ? GO:0003824 ... A3DDW1 28704043
    113052 5wig:A (1.4) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 28965402
    113053 5wig:A (1.4) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 28965402
    113054 5wig:B (1.4) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 28965402
    113055 5wig:B (1.4) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 28965402
    113056 5wih:A (1.35) BS01 ZN 3.5.2.6 N/A A0A024FRL9 28965402
    113057 5wih:A (1.35) BS02 ZN 3.5.2.6 N/A A0A024FRL9 28965402
    113058 5wis:10 (2.703) BS03 MG ? GO:0003735 ... P60493 28934499
    113059 5wis:10 (2.703) BS04 MG ? GO:0003735 ... P60493 28934499
    113060 5wis:10 (2.703) BS05 MG ? GO:0003735 ... P60493 28934499
    113061 5wis:11 (2.703) BS02 MG ? GO:0003735 ... P60494 28934499
    113062 5wis:12 (2.703) BS02 MG ? GO:0003735 ... Q5SHP6 28934499
    113063 5wis:13 (2.703) BS03 MG ? GO:0003735 ... Q5SHQ6 28934499
    113064 5wis:13 (2.703) BS04 MG ? GO:0003735 ... Q5SHQ6 28934499
    113065 5wis:14 (2.703) BS02 ZN ? GO:0003735 ... Q5SJE1 28934499
    113066 5wis:15 (2.703) BS02 ZN ? GO:0003735 ... P80339 28934499
    113067 5wis:16 (2.703) BS02 MG ? GO:0000049 ... P35871 28934499
    113068 5wis:16 (2.703) BS03 ZN ? GO:0000049 ... P35871 28934499
    113069 5wis:16 (2.703) BS04 MG ? GO:0000049 ... P35871 28934499
    113070 5wis:17 (2.703) BS02 MG ? GO:0003735 ... P80340 28934499
    113071 5wis:17 (2.703) BS03 MG ? GO:0003735 ... P80340 28934499
    113072 5wis:18 (2.703) BS02 MG ? GO:0003735 ... P80341 28934499
    113073 5wis:18 (2.703) BS03 MG ? GO:0003735 ... P80341 28934499
    113074 5wis:18 (2.703) BS04 MG ? GO:0003735 ... P80341 28934499
    113075 5wis:19 (2.703) BS02 ZN ? GO:0003735 ... Q5SHR2 28934499
    113076 5wis:1D (2.703) BS03 MG ? GO:0002181 ... P60405 28934499
    113077 5wis:1D (2.703) BS04 MG ? GO:0002181 ... P60405 28934499
    113078 5wis:1D (2.703) BS05 MG ? GO:0002181 ... P60405 28934499
    113079 5wis:1D (2.703) BS06 MG ? GO:0002181 ... P60405 28934499
    113080 5wis:1D (2.703) BS07 MG ? GO:0002181 ... P60405 28934499
    113081 5wis:1D (2.703) BS08 MG ? GO:0002181 ... P60405 28934499
    113082 5wis:1D (2.703) BS09 MG ? GO:0002181 ... P60405 28934499
    113083 5wis:1D (2.703) BS10 MG ? GO:0002181 ... P60405 28934499
    113084 5wis:1D (2.703) BS11 MG ? GO:0002181 ... P60405 28934499
    113085 5wis:1E (2.703) BS02 MG ? GO:0003735 ... Q5SHN8 28934499
    113086 5wis:1E (2.703) BS03 MG ? GO:0003735 ... Q5SHN8 28934499
    113087 5wis:1E (2.703) BS04 MG ? GO:0003735 ... Q5SHN8 28934499
    113088 5wis:1F (2.703) BS02 MG ? GO:0003735 ... Q5SHN9 28934499
    113089 5wis:1F (2.703) BS03 MG ? GO:0003735 ... Q5SHN9 28934499
    113090 5wis:1F (2.703) BS04 MG ? GO:0003735 ... Q5SHN9 28934499
    113091 5wis:1F (2.703) BS05 MG ? GO:0003735 ... Q5SHN9 28934499
    113092 5wis:1F (2.703) BS06 MG ? GO:0003735 ... Q5SHN9 28934499
    113093 5wis:1F (2.703) BS07 MG ? GO:0003735 ... Q5SHN9 28934499
    113094 5wis:1G (2.703) BS04 MG ? GO:0000049 ... Q5SHQ0 28934499
    113095 5wis:1G (2.703) BS05 MG ? GO:0000049 ... Q5SHQ0 28934499
    113096 5wis:1N (2.703) BS02 MG ? GO:0003729 ... P60488 28934499
    113097 5wis:1N (2.703) BS03 MG ? GO:0003729 ... P60488 28934499
    113098 5wis:1N (2.703) BS04 MG ? GO:0003729 ... P60488 28934499
    113099 5wis:1N (2.703) BS05 MG ? GO:0003729 ... P60488 28934499
    113100 5wis:1O (2.703) BS03 MG ? GO:0003735 ... Q5SHP8 28934499
    113101 5wis:1O (2.703) BS04 MG ? GO:0003735 ... Q5SHP8 28934499
    113102 5wis:1P (2.703) BS02 MG ? GO:0003735 ... Q5SHQ7 28934499
    113103 5wis:1P (2.703) BS03 MG ? GO:0003735 ... Q5SHQ7 28934499
    113104 5wis:1P (2.703) BS04 MG ? GO:0003735 ... Q5SHQ7 28934499
    113105 5wis:1P (2.703) BS05 MG ? GO:0003735 ... Q5SHQ7 28934499
    113106 5wis:1P (2.703) BS06 MG ? GO:0003735 ... Q5SHQ7 28934499
    113107 5wis:1Q (2.703) BS04 MG ? GO:0000049 ... P60489 28934499
    113108 5wis:1Q (2.703) BS05 MG ? GO:0000049 ... P60489 28934499
    113109 5wis:1Q (2.703) BS06 MG ? GO:0000049 ... P60489 28934499
    113110 5wis:1Q (2.703) BS07 MG ? GO:0000049 ... P60489 28934499
    113111 5wis:1Q (2.703) BS08 MG ? GO:0000049 ... P60489 28934499
    113112 5wis:1R (2.703) BS02 MG ? GO:0003735 ... Q9Z9H5 28934499
    113113 5wis:1R (2.703) BS03 MG ? GO:0003735 ... Q9Z9H5 28934499
    113114 5wis:1S (2.703) BS03 MG ? GO:0003735 ... Q5SHQ4 28934499
    113115 5wis:1S (2.703) BS04 MG ? GO:0003735 ... Q5SHQ4 28934499
    113116 5wis:1U (2.703) BS02 MG ? GO:0000027 ... P60491 28934499
    113117 5wis:1U (2.703) BS03 MG ? GO:0000027 ... P60491 28934499
    113118 5wis:1U (2.703) BS04 MG ? GO:0000027 ... P60491 28934499
    113119 5wis:1U (2.703) BS05 MG ? GO:0000027 ... P60491 28934499
    113120 5wis:1U (2.703) BS06 MG ? GO:0000027 ... P60491 28934499
    113121 5wis:1U (2.703) BS07 MG ? GO:0000027 ... P60491 28934499
    113122 5wis:1U (2.703) BS08 MG ? GO:0000027 ... P60491 28934499
    113123 5wis:1V (2.703) BS02 MG ? GO:0003723 ... P60492 28934499
    113124 5wis:1V (2.703) BS03 MG ? GO:0003723 ... P60492 28934499
    113125 5wis:1V (2.703) BS04 MG ? GO:0003723 ... P60492 28934499
    113126 5wis:1V (2.703) BS05 MG ? GO:0003723 ... P60492 28934499
    113127 5wis:1V (2.703) BS06 MG ? GO:0003723 ... P60492 28934499
    113128 5wis:1W (2.703) BS02 MG ? GO:0003735 ... Q5SHP3 28934499
    113129 5wis:1W (2.703) BS03 MG ? GO:0003735 ... Q5SHP3 28934499
    113130 5wis:1W (2.703) BS04 MG ? GO:0003735 ... Q5SHP3 28934499
    113131 5wis:1W (2.703) BS05 MG ? GO:0003735 ... Q5SHP3 28934499
    113132 5wis:1W (2.703) BS06 MG ? GO:0003735 ... Q5SHP3 28934499
    113133 5wis:1X (2.703) BS02 MG ? GO:0000027 ... Q5SHP0 28934499
    113134 5wis:1X (2.703) BS03 MG ? GO:0000027 ... Q5SHP0 28934499
    113135 5wis:1X (2.703) BS04 MG ? GO:0000027 ... Q5SHP0 28934499
    113136 5wis:1X (2.703) BS05 MG ? GO:0000027 ... Q5SHP0 28934499
    113137 5wis:1X (2.703) BS06 MG ? GO:0000027 ... Q5SHP0 28934499
    113138 5wis:1Y (2.703) BS02 ZN ? GO:0003723 ... Q5SHP9 28934499
    113139 5wis:1Y (2.703) BS03 MG ? GO:0003723 ... Q5SHP9 28934499
    113140 5wis:1Z (2.703) BS03 MG ? GO:0003723 ... Q5SHZ1 28934499
    113141 5wis:1b (2.703) BS02 MG ? GO:0003735 ... P80371 28934499
    113142 5wis:1e (2.703) BS02 MG ? GO:0003723 ... Q5SHQ5 28934499
    113143 5wis:1e (2.703) BS03 MG ? GO:0003723 ... Q5SHQ5 28934499
    113144 5wis:1f (2.703) BS02 MG ? GO:0003735 ... Q5SLP8 28934499
    113145 5wis:1k (2.703) BS02 MG ? GO:0003735 ... P80376 28934499
    113146 5wis:1m (2.703) BS03 MG ? GO:0000049 ... P80377 28934499
    113147 5wis:1n (2.703) BS02 ZN ? GO:0003735 ... P0DOY6 28934499
    113148 5wis:1n (2.703) BS03 MG ? GO:0003735 ... P0DOY6 28934499
    113149 5wis:1t (2.703) BS02 MG ? GO:0003723 ... P80380 28934499
    113150 5wis:23 (2.703) BS03 MG ? GO:0003735 ... Q5SHQ6 28934499
    113151 5wis:23 (2.703) BS04 MG ? GO:0003735 ... Q5SHQ6 28934499
    113152 5wis:24 (2.703) BS02 ZN ? GO:0003735 ... Q5SJE1 28934499
    113153 5wis:25 (2.703) BS02 MG ? GO:0003735 ... P80339 28934499
    113154 5wis:25 (2.703) BS03 MG ? GO:0003735 ... P80339 28934499
    113155 5wis:25 (2.703) BS04 ZN ? GO:0003735 ... P80339 28934499
    113156 5wis:26 (2.703) BS02 ZN ? GO:0000049 ... P35871 28934499
    113157 5wis:26 (2.703) BS03 MG ? GO:0000049 ... P35871 28934499
    113158 5wis:27 (2.703) BS02 MG ? GO:0003735 ... P80340 28934499
    113159 5wis:29 (2.703) BS02 ZN ? GO:0003735 ... Q5SHR2 28934499
    113160 5wis:2D (2.703) BS03 MG ? GO:0002181 ... P60405 28934499
    113161 5wis:2D (2.703) BS04 MG ? GO:0002181 ... P60405 28934499
    113162 5wis:2D (2.703) BS05 MG ? GO:0002181 ... P60405 28934499
    113163 5wis:2D (2.703) BS06 MG ? GO:0002181 ... P60405 28934499
    113164 5wis:2D (2.703) BS07 MG ? GO:0002181 ... P60405 28934499
    113165 5wis:2E (2.703) BS02 MG ? GO:0003735 ... Q5SHN8 28934499
    113166 5wis:2F (2.703) BS02 MG ? GO:0003735 ... Q5SHN9 28934499
    113167 5wis:2F (2.703) BS03 MG ? GO:0003735 ... Q5SHN9 28934499
    113168 5wis:2Q (2.703) BS04 MG ? GO:0000049 ... P60489 28934499
    113169 5wis:2Q (2.703) BS05 MG ? GO:0000049 ... P60489 28934499
    113170 5wis:2Q (2.703) BS06 MG ? GO:0000049 ... P60489 28934499
    113171 5wis:2U (2.703) BS02 MG ? GO:0000027 ... P60491 28934499
    113172 5wis:2U (2.703) BS03 MG ? GO:0000027 ... P60491 28934499
    113173 5wis:2U (2.703) BS04 MG ? GO:0000027 ... P60491 28934499
    113174 5wis:2V (2.703) BS02 MG ? GO:0003723 ... P60492 28934499
    113175 5wis:2V (2.703) BS03 MG ? GO:0003723 ... P60492 28934499
    113176 5wis:2V (2.703) BS04 MG ? GO:0003723 ... P60492 28934499
    113177 5wis:2W (2.703) BS02 MG ? GO:0003735 ... Q5SHP3 28934499
    113178 5wis:2W (2.703) BS03 MG ? GO:0003735 ... Q5SHP3 28934499
    113179 5wis:2X (2.703) BS02 MG ? GO:0000027 ... Q5SHP0 28934499
    113180 5wis:2Y (2.703) BS02 ZN ? GO:0003723 ... Q5SHP9 28934499
    113181 5wis:2Z (2.703) BS03 MG ? GO:0003723 ... Q5SHZ1 28934499
    113182 5wis:2e (2.703) BS02 MG ? GO:0003723 ... Q5SHQ5 28934499
    113183 5wis:2f (2.703) BS02 MG ? GO:0003735 ... Q5SLP8 28934499
    113184 5wis:2k (2.703) BS02 MG ? GO:0003735 ... P80376 28934499
    113185 5wis:2l (2.703) BS03 MG ? GO:0000049 ... Q5SHN3 28934499
    113186 5wis:2l (2.703) BS04 MG ? GO:0000049 ... Q5SHN3 28934499
    113187 5wis:2n (2.703) BS02 ZN ? GO:0003735 ... P0DOY6 28934499
    113188 5wis:2q (2.703) BS02 MG ? GO:0003735 ... P0DOY7 28934499
    113189 5wis:2q (2.703) BS03 MG ? GO:0003735 ... P0DOY7 28934499
    113190 5wis:2t (2.703) BS02 MG ? GO:0003723 ... P80380 28934499
    113191 5wit:10 (2.6) BS04 MG ? GO:0003735 ... P60493 28934499
    113192 5wit:10 (2.6) BS05 MG ? GO:0003735 ... P60493 28934499
    113193 5wit:10 (2.6) BS06 MG ? GO:0003735 ... P60493 28934499
    113194 5wit:11 (2.6) BS03 MG ? GO:0003735 ... P60494 28934499
    113195 5wit:11 (2.6) BS04 MG ? GO:0003735 ... P60494 28934499
    113196 5wit:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 28934499
    113197 5wit:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 28934499
    113198 5wit:13 (2.6) BS04 MG ? GO:0003735 ... Q5SHQ6 28934499
    113199 5wit:13 (2.6) BS05 MG ? GO:0003735 ... Q5SHQ6 28934499
    113200 5wit:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 28934499
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218