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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    112801 5wch:A (2.5) BS01 ZN 3.4.19.12 GO:0004843 ... Q93008 30914461
    112802 5wch:B (2.5) BS01 ZN 3.4.19.12 GO:0004843 ... Q93008 30914461
    112803 5wch:C (2.5) BS01 ZN 3.4.19.12 GO:0004843 ... Q93008 30914461
    112804 5wch:D (2.5) BS01 ZN 3.4.19.12 GO:0004843 ... Q93008 30914461
    112805 5wci:A (1.78) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q9H7Z6 N/A
    112806 5wck:A (1.65) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    112807 5wck:A (1.65) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    112808 5wck:B (1.65) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    112809 5wck:B (1.65) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    112810 5wcm:A (1.2) BS01 ZN ? GO:0046872 ... Q89GW5 20696874
    112811 5wcm:A (1.2) BS02 ZN ? GO:0046872 ... Q89GW5 20696874
    112812 5wcm:A (1.2) BS03 ZN ? GO:0046872 ... Q89GW5 20696874
    112813 5wcm:A (1.2) BS04 ZN ? GO:0046872 ... Q89GW5 20696874
    112814 5wcm:A (1.2) BS05 ZN ? GO:0046872 ... Q89GW5 20696874
    112815 5wcm:B (1.2) BS01 ZN ? GO:0046872 ... Q89GW5 20696874
    112816 5wcm:B (1.2) BS02 ZN ? GO:0046872 ... Q89GW5 20696874
    112817 5wcm:B (1.2) BS03 ZN ? GO:0046872 ... Q89GW5 20696874
    112818 5wcm:B (1.2) BS04 ZN ? GO:0046872 ... Q89GW5 20696874
    112819 5wcp:A (1.5) BS01 ZN ? GO:0008270 ... A0A060GZX0 N/A
    112820 5wcp:A (1.5) BS02 ZN ? GO:0008270 ... A0A060GZX0 N/A
    112821 5wcp:G (1.5) BS01 ZN ? GO:0008270 ... A0A060GZX0 N/A
    112822 5wcp:G (1.5) BS02 ZN ? GO:0008270 ... A0A060GZX0 N/A
    112823 5wcq:A (1.576) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    112824 5wcq:A (1.576) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    112825 5wcq:G (1.576) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    112826 5wcq:G (1.576) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    112827 5wcr:A (1.75) BS01 ZN ? GO:0008270 ... A0A060GYS1 N/A
    112828 5wcr:A (1.75) BS02 ZN ? GO:0008270 ... A0A060GYS1 N/A
    112829 5wcr:G (1.75) BS01 ZN ? GO:0008270 ... A0A060GYS1 N/A
    112830 5wcr:G (1.75) BS02 ZN ? GO:0008270 ... A0A060GYS1 N/A
    112831 5wcs:A (2.525) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112832 5wcs:A (2.525) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112833 5wct:A (2.3) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112834 5wct:A (2.3) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112835 5wcw:A (1.457) BS01 ZN ? GO:0008270 ... A0A060GZX0 N/A
    112836 5wcw:A (1.457) BS02 ZN ? GO:0008270 ... A0A060GZX0 N/A
    112837 5wcw:G (1.457) BS01 ZN ? GO:0008270 ... A0A060GZX0 N/A
    112838 5wcw:G (1.457) BS02 ZN ? GO:0008270 ... A0A060GZX0 N/A
    112839 5wcx:A (2.0) BS01 MN ? N/A Q9A0F9 N/A
    112840 5wcx:A (2.0) BS03 CA ? N/A Q9A0F9 N/A
    112841 5wcx:B (2.0) BS01 MN ? N/A Q9A0F9 N/A
    112842 5wd6:A (2.0) BS01 CA ? GO:0001530 ... P79125 30978191
    112843 5wda:A (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112844 5wda:B (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112845 5wda:C (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112846 5wda:D (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112847 5wda:E (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112848 5wda:F (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112849 5wda:G (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112850 5wda:H (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112851 5wda:I (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112852 5wda:J (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112853 5wda:K (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112854 5wda:L (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112855 5wda:M (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112856 5wda:N (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112857 5wda:O (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112858 5wda:P (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112859 5wda:Q (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112860 5wda:R (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112861 5wda:S (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112862 5wda:T (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112863 5wda:U (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112864 5wda:V (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112865 5wda:W (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112866 5wda:X (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112867 5wda:Y (5.0) BS01 CA N/A GO:0015627 ... N/A 28993624
    112868 5wdc:A (2.1) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112869 5wdc:A (2.1) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112870 5wdg:A (2.12) BS01 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    112871 5wdg:A (2.12) BS02 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    112872 5wdg:A (2.12) BS03 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    112873 5wdg:B (2.12) BS01 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    112874 5wdg:B (2.12) BS02 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    112875 5wdg:B (2.12) BS03 MG 2.2.1.6 GO:0000287 ... P27696 N/A
    112876 5wdj:B (2.4) BS03 CA 1.11.2.2 GO:0004601 ... P05164 30108726
    112877 5wdj:E (2.4) BS02 CA 1.11.2.2 GO:0004601 ... P05164 30108726
    112878 5wdn:A (2.1) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112879 5wdn:A (2.1) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112880 5wdo:A (1.65) BS01 CA 3.6.5.2 GO:0003924 ... P01112 28686159
    112881 5wdo:A (1.65) BS02 MG 3.6.5.2 GO:0003924 ... P01112 28686159
    112882 5wdp:A (1.35) BS01 CA 3.6.5.2 GO:0003924 ... P01112 28686159
    112883 5wdp:A (1.35) BS03 CA 3.6.5.2 GO:0003924 ... P01112 28686159
    112884 5wdp:A (1.35) BS04 MG 3.6.5.2 GO:0003924 ... P01112 28686159
    112885 5wdq:A (1.25) BS02 CA 3.6.5.2 GO:0003924 ... P01112 28686159
    112886 5wdq:A (1.25) BS03 MG 3.6.5.2 GO:0003924 ... P01112 28686159
    112887 5wdq:A (1.25) BS04 CA 3.6.5.2 GO:0003924 ... P01112 28686159
    112888 5wdq:A (1.25) BS05 MG 3.6.5.2 GO:0003924 ... P01112 28686159
    112889 5wdr:A (1.6) BS01 MG 3.6.5.2 GO:0003924 ... F2UBE5 28686159
    112890 5wdr:B (1.6) BS01 MG 3.6.5.2 GO:0003924 ... F2UBE5 28686159
    112891 5wdt:3 (3.0) BS02 MG ? GO:0002181 ... P0A7Q1 29733411
    112892 5wdt:Z (3.0) BS03 MG ? GO:0000027 ... P0AG51 29733411
    112893 5wdt:t (3.0) BS02 MG ? GO:0000028 ... P0A7U7 29733411
    112894 5wdt:z (3.0) BS06 MG ? GO:0003723 ... P0CE48 29733411
    112895 5wdw:A (2.3) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112896 5wdw:A (2.3) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112897 5wdx:A (2.23) BS01 ZN 3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... R9TEU1 29070684
    112898 5wdx:A (2.23) BS02 MG 3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... R9TEU1 29070684
    112899 5wdx:A (2.23) BS03 MG 3.4.21.98
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... R9TEU1 29070684
    112900 5wdy:A (2.458) BS03 MN 2.7.11.1 GO:0004672 ... Q9H4A3 28771350
    112901 5wdy:B (2.458) BS01 MN 2.7.11.1 GO:0004672 ... Q9H4A3 28771350
    112902 5we1:D (3.202) BS01 ZN ? N/A O14246 29149597
    112903 5we2:B (2.5) BS01 ZN ? N/A O14246 29149597
    112904 5we4:D (3.1) BS02 MG ? GO:0000027 ... P60438 29733411
    112905 5we4:z (3.1) BS06 MG ? GO:0003723 ... P0CE48 29733411
    112906 5we6:3 (3.4) BS02 MG ? GO:0002181 ... P0A7Q1 29733411
    112907 5we6:C (3.4) BS03 MG ? GO:0000027 ... P60422 29733411
    112908 5we6:z (3.4) BS06 MG ? GO:0003723 ... P0CE48 29733411
    112909 5we7:A (2.12) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 N/A
    112910 5we7:A (2.12) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 N/A
    112911 5we8:A (2.006) BS01 MN 2.7.11.1 GO:0004672 ... Q9H4A3 28771350
    112912 5we8:B (2.006) BS01 MN 2.7.11.1 GO:0004672 ... Q9H4A3 28771350
    112913 5we9:A (1.804) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112914 5we9:A (1.804) BS02 MG 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112915 5web:A (2.254) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112916 5web:A (2.254) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112917 5wef:A (2.0) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112918 5wef:A (2.0) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112919 5weh:A (3.45) BS03 CU1 7.1.1.9 GO:0004129 ... P33517 28842531
    112920 5weh:A (3.45) BS04 MG 7.1.1.9 GO:0004129 ... P33517 28842531
    112921 5weh:A (3.45) BS05 CA 7.1.1.9 GO:0004129 ... P33517 28842531
    112922 5weh:B (3.45) BS01 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    112923 5weh:B (3.45) BS02 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    112924 5weh:G (3.45) BS03 CU1 7.1.1.9 GO:0004129 ... P33517 28842531
    112925 5weh:G (3.45) BS04 MG 7.1.1.9 GO:0004129 ... P33517 28842531
    112926 5weh:G (3.45) BS05 CA 7.1.1.9 GO:0004129 ... P33517 28842531
    112927 5weh:H (3.45) BS01 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    112928 5weh:H (3.45) BS02 CU1 7.1.1.9 GO:0004129 ... Q03736 28842531
    112929 5wei:A (2.25) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112930 5wei:A (2.25) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112931 5wep:A (3.502) BS02 ZN ? GO:0016740 ... D7UQM0 30642934
    112932 5wep:B (3.502) BS03 ZN ? GO:0016740 ... D7UQM0 30642934
    112933 5wew:A (3.178) BS01 MN ? GO:0046872 ... W8UNW6 30642934
    112934 5wew:B (3.178) BS02 MN ? GO:0046872 ... W8UNW6 30642934
    112935 5wew:C (3.178) BS01 MN ? GO:0046872 ... W8UNW6 30642934
    112936 5wew:D (3.178) BS02 MN ? GO:0046872 ... W8UNW6 30642934
    112937 5wew:E (3.178) BS01 MN ? GO:0046872 ... W8UNW6 30642934
    112938 5wew:F (3.178) BS02 MN ? GO:0046872 ... W8UNW6 30642934
    112939 5wew:G (3.178) BS02 MN ? GO:0046872 ... W8UNW6 30642934
    112940 5wew:H (3.178) BS03 MN ? GO:0046872 ... W8UNW6 30642934
    112941 5wex:A (1.26) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28947945
    112942 5wey:A (1.8) BS02 MN ? N/A P02866 28846383
    112943 5wey:A (1.8) BS03 CA ? N/A P02866 28846383
    112944 5wf0:D (3.6) BS02 MG ? GO:0000027 ... P60438 29733411
    112945 5wf3:A (2.251) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112946 5wf3:A (2.251) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112947 5wf7:B (2.5) BS01 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112948 5wf7:B (2.5) BS02 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112949 5wf7:B (2.5) BS03 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112950 5wf7:B (2.5) BS04 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112951 5wf7:B (2.5) BS05 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112952 5wf7:B (2.5) BS06 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112953 5wf7:B (2.5) BS07 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112954 5wf7:B (2.5) BS08 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112955 5wfc:B (2.282) BS01 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112956 5wfc:B (2.282) BS02 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112957 5wfc:B (2.282) BS03 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112958 5wfc:B (2.282) BS04 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112959 5wfc:B (2.282) BS05 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112960 5wfc:B (2.282) BS06 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112961 5wfc:B (2.282) BS07 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112962 5wfc:B (2.282) BS08 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112963 5wfd:B (2.654) BS01 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112964 5wfd:B (2.654) BS02 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112965 5wfd:B (2.654) BS03 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112966 5wfd:B (2.654) BS04 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112967 5wfd:B (2.654) BS05 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112968 5wfd:B (2.654) BS06 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112969 5wfd:B (2.654) BS07 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112970 5wfd:B (2.654) BS08 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 29904056
    112971 5wfi:A (1.851) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0C6X9 N/A
    112972 5wfi:B (1.851) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0C6X9 N/A
    112973 5wfm:A (2.251) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112974 5wfm:A (2.251) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112975 5wfo:Q (1.99) BS01 MG 3.6.5.2 GO:0003924 ... P01112 29444450
    112976 5wfp:Q (2.08) BS01 MG 3.6.5.2 GO:0003924 ... P01112 29444450
    112977 5wfq:Q (2.26) BS01 MG 3.6.5.2 GO:0003924 ... P01112 29444450
    112978 5wfr:Q (2.46) BS01 MG 3.6.5.2 GO:0003924 ... P01112 29444450
    112979 5wfs:C (3.0) BS02 MG ? GO:0000027 ... P60422 29733411
    112980 5wfs:Q (3.0) BS02 MG ? GO:0000027 ... P0A7L3 29733411
    112981 5wfs:m (3.0) BS02 MG ? GO:0000049 ... P0A7S9 29733411
    112982 5wfs:z (3.0) BS06 MG ? GO:0003723 ... P0CE48 29733411
    112983 5wfw:A (2.292) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112984 5wfw:A (2.292) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112985 5wfz:A (2.35) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112986 5wfz:A (2.35) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112987 5wg3:A (2.896) BS02 MG 2.7.11.15 GO:0001664 ... P25098 29070696
    112988 5wg5:A (3.1) BS02 MG 2.7.11.15 GO:0001664 ... P25098 29070696
    112989 5wg6:A (3.901) BS01 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    112990 5wg6:A (3.901) BS02 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    112991 5wg6:A (3.901) BS03 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    112992 5wg6:A (3.901) BS04 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    112993 5wg6:A (3.901) BS05 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    112994 5wg6:A (3.901) BS06 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    112995 5wg6:A (3.901) BS07 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    112996 5wg6:C (3.901) BS01 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    112997 5wg6:C (3.901) BS02 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    112998 5wg6:C (3.901) BS03 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    112999 5wg6:C (3.901) BS04 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    113000 5wg6:C (3.901) BS05 ZN 2.1.1.356
    2.1.1.43    		 GO:0000082 ... Q15022
    Q15910    		 29904056
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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