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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    112601 5w4u:A (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 28933854
    112602 5w4u:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 28933854
    112603 5w4u:A (3.6) BS05 MG 2.7.7.6 GO:0000428 ... P04050 28933854
    112604 5w4u:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 28933854
    112605 5w4u:C (3.6) BS01 ZN ? GO:0000428 ... P16370 28933854
    112606 5w4u:I (3.6) BS01 ZN ? GO:0000428 ... P27999 28933854
    112607 5w4u:I (3.6) BS02 ZN ? GO:0000428 ... P27999 28933854
    112608 5w4u:J (3.6) BS01 ZN ? GO:0000428 ... P22139 28933854
    112609 5w4u:L (3.6) BS01 ZN ? GO:0000428 ... P40422 28933854
    112610 5w51:A (3.404) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 28933854
    112611 5w51:A (3.404) BS05 MG 2.7.7.6 GO:0000428 ... P04050 28933854
    112612 5w51:B (3.404) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 28933854
    112613 5w51:C (3.404) BS01 ZN ? GO:0000428 ... P16370 28933854
    112614 5w51:I (3.404) BS01 ZN ? GO:0000428 ... P27999 28933854
    112615 5w51:I (3.404) BS02 ZN ? GO:0000428 ... P27999 28933854
    112616 5w51:J (3.404) BS01 ZN ? GO:0000428 ... P22139 28933854
    112617 5w51:L (3.404) BS01 ZN ? GO:0000428 ... P40422 28933854
    112618 5w56:A (2.03) BS01 NA ? GO:0007155 ... A1B2F3 28887302
    112619 5w56:B (2.03) BS01 NA ? GO:0007155 ... A1B2F3 28887302
    112620 5w57:A (2.3) BS01 ZN ? GO:0007155 ... A1B2F3 28887302
    112621 5w57:B (2.3) BS01 ZN ? GO:0007155 ... A1B2F3 28887302
    112622 5w5k:A (2.7) BS01 ZN ? N/A F8W4B7 30645113
    112623 5w5k:B (2.7) BS02 ZN ? N/A F8W4B7 30645113
    112624 5w5k:C (2.7) BS01 ZN ? N/A F8W4B7 30645113
    112625 5w5x:L (2.502) BS01 ZN N/A N/A N/A 30122452
    112626 5w5y:A (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... P10964 28623663
    112627 5w5y:A (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... P10964 28623663
    112628 5w5y:B (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... P22138 28623663
    112629 5w5y:I (3.8) BS01 ZN ? GO:0000122 ... P32529 28623663
    112630 5w5y:J (3.8) BS01 ZN ? GO:0000428 ... P22139 28623663
    112631 5w5y:L (3.8) BS01 ZN ? GO:0000428 ... P40422 28623663
    112632 5w64:A (4.2) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 28623663
    112633 5w64:A (4.2) BS03 ZN 2.7.7.6 GO:0000428 ... P10964 28623663
    112634 5w64:B (4.2) BS04 ZN 2.7.7.6 GO:0000428 ... P22138 28623663
    112635 5w64:I (4.2) BS01 ZN ? GO:0000122 ... P32529 28623663
    112636 5w64:J (4.2) BS01 ZN ? GO:0000428 ... P22139 28623663
    112637 5w64:L (4.2) BS01 ZN ? GO:0000428 ... P40422 28623663
    112638 5w65:A (4.3) BS03 ZN 2.7.7.6 GO:0000428 ... P10964 28623663
    112639 5w65:A (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... P10964 28623663
    112640 5w65:B (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... P22138 28623663
    112641 5w65:I (4.3) BS01 ZN ? GO:0000122 ... P32529 28623663
    112642 5w65:J (4.3) BS01 ZN ? GO:0000428 ... P22139 28623663
    112643 5w65:L (4.3) BS01 ZN ? GO:0000428 ... P40422 28623663
    112644 5w65:P (4.3) BS03 ZN ? GO:0000120 ... P40992 28623663
    112645 5w66:A (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... P10964 28623663
    112646 5w66:A (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... P10964 28623663
    112647 5w66:B (3.9) BS04 ZN 2.7.7.6 GO:0000428 ... P22138 28623663
    112648 5w66:I (3.9) BS01 ZN ? GO:0000122 ... P32529 28623663
    112649 5w66:J (3.9) BS01 ZN ? GO:0000428 ... P22139 28623663
    112650 5w66:L (3.9) BS01 ZN ? GO:0000428 ... P40422 28623663
    112651 5w6b:A (1.739) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    112652 5w6b:A (1.739) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    112653 5w6b:G (1.739) BS01 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    112654 5w6b:G (1.739) BS02 ZN 3.1.8.1 GO:0004063 ... P0A434 N/A
    112655 5w6e:A (1.9) BS01 ZN 3.1.4.17 GO:0004114 ... Q01064 29718668
    112656 5w6k:A (2.339) BS04 MG 2.7.7.7 GO:0001882 ... P19821 29986111
    112657 5w6k:A (2.339) BS05 MG 2.7.7.7 GO:0001882 ... P19821 29986111
    112658 5w6p:A (2.335) BS01 ZN ? N/A G3M190 31325442
    112659 5w6p:A (2.335) BS02 ZN ? N/A G3M190 31325442
    112660 5w6p:A (2.335) BS03 ZN ? N/A G3M190 31325442
    112661 5w6p:B (2.335) BS01 ZN ? N/A G3M190 31325442
    112662 5w6p:B (2.335) BS02 ZN ? N/A G3M190 31325442
    112663 5w6p:C (2.335) BS01 ZN ? N/A G3M190 31325442
    112664 5w6p:C (2.335) BS02 ZN ? N/A G3M190 31325442
    112665 5w6p:D (2.335) BS01 ZN ? N/A G3M190 31325442
    112666 5w6p:D (2.335) BS02 ZN ? N/A G3M190 31325442
    112667 5w6p:D (2.335) BS03 ZN ? N/A G3M190 31325442
    112668 5w6p:E (2.335) BS01 ZN ? N/A G3M190 31325442
    112669 5w6p:E (2.335) BS02 ZN ? N/A G3M190 31325442
    112670 5w6p:E (2.335) BS03 ZN ? N/A G3M190 31325442
    112671 5w6p:F (2.335) BS01 ZN ? N/A G3M190 31325442
    112672 5w6p:F (2.335) BS02 ZN ? N/A G3M190 31325442
    112673 5w6p:F (2.335) BS03 ZN ? N/A G3M190 31325442
    112674 5w6x:A (2.1) BS02 MG 3.6.1.62
    3.6.1.64    		 GO:0000166 ... Q96DE0 30976021
    112675 5w6x:A (2.1) BS03 MG 3.6.1.62
    3.6.1.64    		 GO:0000166 ... Q96DE0 30976021
    112676 5w6x:B (2.1) BS02 MG 3.6.1.62
    3.6.1.64    		 GO:0000166 ... Q96DE0 30976021
    112677 5w73:A (2.202) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112678 5w73:A (2.202) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112679 5w78:B (2.271) BS01 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    112680 5w78:B (2.271) BS02 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    112681 5w7a:B (2.3) BS01 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    112682 5w7a:B (2.3) BS02 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    112683 5w7a:B (2.3) BS03 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    112684 5w7b:C (1.9) BS01 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    112685 5w7b:C (1.9) BS02 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    112686 5w7b:C (1.9) BS03 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    112687 5w7b:D (1.9) BS01 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    112688 5w7b:D (1.9) BS02 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    112689 5w7b:D (1.9) BS03 CA 3.1.1.77 GO:0016788 ... O18823 29343645
    112690 5w7c:C (2.23) BS01 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    112691 5w7c:C (2.23) BS02 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    112692 5w7c:C (2.23) BS03 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    112693 5w7c:D (2.23) BS01 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    112694 5w7c:D (2.23) BS02 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    112695 5w7c:D (2.23) BS03 CA 3.1.1.77 GO:0016788 ... P28039 29343645
    112696 5w7d:A (1.75) BS01 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112697 5w7d:A (1.75) BS02 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112698 5w7d:A (1.75) BS03 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112699 5w7e:A (1.83) BS01 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112700 5w7e:A (1.83) BS02 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112701 5w7e:A (1.83) BS03 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112702 5w7e:B (1.83) BS01 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112703 5w7e:B (1.83) BS02 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112704 5w7e:B (1.83) BS03 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112705 5w7f:A (2.8) BS01 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112706 5w7f:A (2.8) BS02 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112707 5w7f:A (2.8) BS03 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112708 5w7f:B (2.8) BS01 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112709 5w7f:B (2.8) BS02 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112710 5w7f:B (2.8) BS03 CA 3.1.1.77 GO:0005509 ... O35298 29343645
    112711 5w7h:A (2.75) BS01 ZN ? GO:0008270 ... Q93LD7 N/A
    112712 5w7h:A (2.75) BS02 ZN ? GO:0008270 ... Q93LD7 N/A
    112713 5w7h:B (2.75) BS01 ZN ? GO:0008270 ... Q93LD7 N/A
    112714 5w7h:B (2.75) BS02 ZN ? GO:0008270 ... Q93LD7 N/A
    112715 5w7n:A (1.8) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    112716 5w7n:A (1.8) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    112717 5w7o:A (1.75) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    112718 5w7o:A (1.75) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    112719 5w7u:A (2.2) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112720 5w7u:A (2.2) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112721 5w80:A (2.0) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    112722 5w81:A (3.37) BS03 MG 5.6.1.6 GO:0002679 ... Q1LX78 28735752
    112723 5w81:A (3.37) BS04 MG 5.6.1.6 GO:0002679 ... Q1LX78 28735752
    112724 5w83:B (1.554) BS01 ZN 3.4.19.12 GO:0008233 ... P43588 28844860
    112725 5w89:A (1.42) BS02 ZN ? GO:0042981 ... Q07820 29339518
    112726 5w8b:A (1.601) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29423818
    112727 5w8f:A (1.85) BS02 ZN ? GO:0042981 ... Q07820 29339518
    112728 5w8o:A (1.47) BS01 CA 2.3.1.31 GO:0003824 ... K5B926 31889085
    112729 5w8o:B (1.47) BS01 CA 2.3.1.31 GO:0003824 ... K5B926 31889085
    112730 5w8r:A (2.2) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    112731 5w8t:A (2.758) BS02 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... M4STU1 28931677
    112732 5w8t:A (2.758) BS03 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... M4STU1 28931677
    112733 5w8t:A (2.758) BS04 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... M4STU1 28931677
    112734 5w8t:C (2.758) BS02 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... M4STU1 28931677
    112735 5w8u:A (2.411) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... M4STU1 28931677
    112736 5w8u:A (2.411) BS02 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... M4STU1 28931677
    112737 5w8u:C (2.411) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... M4STU1 28931677
    112738 5w8u:C (2.411) BS02 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13    		 GO:0006508 ... M4STU1 28931677
    112739 5w8v:A (2.346) BS02 MG 2.4.2.8 GO:0000166 ... P00492 28813147
    112740 5w8v:B (2.346) BS02 MG 2.4.2.8 GO:0000166 ... P00492 28813147
    112741 5w8v:C (2.346) BS02 MG 2.4.2.8 GO:0000166 ... P00492 28813147
    112742 5w8v:D (2.346) BS02 MG 2.4.2.8 GO:0000166 ... P00492 28813147
    112743 5w8w:A (2.25) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 30466711
    112744 5w8w:A (2.25) BS02 ZN 3.5.2.6 GO:0008270 ... P04190 30466711
    112745 5w90:A (1.78) BS01 ZN 3.5.2.6 N/A Q9K578 12507470
    112746 5w90:A (1.78) BS02 ZN 3.5.2.6 N/A Q9K578 12507470
    112747 5w91:A (2.4) BS02 CA ? GO:0004672 ... Q9BJF5 N/A
    112748 5w92:A (2.3) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112749 5w92:A (2.3) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112750 5w97:A (2.3) BS03 CU 7.1.1.9 GO:0004129 ... P00396 28698372
    112751 5w97:A (2.3) BS04 MG 7.1.1.9 GO:0004129 ... P00396 28698372
    112752 5w97:F (2.3) BS01 ZN ? GO:0005740 ... P00428 28698372
    112753 5w97:a (2.3) BS03 CU 7.1.1.9 GO:0004129 ... P00396 28698372
    112754 5w97:a (2.3) BS04 MG 7.1.1.9 GO:0004129 ... P00396 28698372
    112755 5w97:f (2.3) BS01 ZN ? GO:0005740 ... P00428 28698372
    112756 5w9a:A (2.74) BS01 ZN 2.3.2.27 GO:0008270 ... Q0PF16 30282803
    112757 5w9a:A (2.74) BS02 ZN 2.3.2.27 GO:0008270 ... Q0PF16 30282803
    112758 5w9a:B (2.74) BS01 ZN 2.3.2.27 GO:0008270 ... Q0PF16 30282803
    112759 5w9a:B (2.74) BS02 ZN 2.3.2.27 GO:0008270 ... Q0PF16 30282803
    112760 5w9g:A (2.1) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112761 5w9g:A (2.1) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112762 5w9q:A (1.8) BS03 ZN ? GO:0003677 ... Q9UIS9 29276034
    112763 5w9q:A (1.8) BS04 ZN ? GO:0003677 ... Q9UIS9 29276034
    112764 5w9q:B (1.8) BS03 ZN ? GO:0003677 ... Q9UIS9 29276034
    112765 5w9q:B (1.8) BS04 ZN ? GO:0003677 ... Q9UIS9 29276034
    112766 5w9s:C (2.1) BS03 ZN ? GO:0003677 ... Q7LFL8 29276034
    112767 5w9s:C (2.1) BS04 ZN ? GO:0003677 ... Q7LFL8 29276034
    112768 5wa6:A (2.25) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112769 5wa6:A (2.25) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112770 5wa7:A (2.204) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112771 5wa7:A (2.204) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112772 5wai:B (2.9) BS02 ZN ? N/A Q15022 29499137
    112773 5wai:F (2.9) BS02 ZN ? N/A Q15022 29499137
    112774 5wak:B (3.2) BS01 ZN ? N/A Q15022 29499137
    112775 5wam:B (2.45) BS01 ZN ? GO:0019867 ... Q5F5Y8 29229778
    112776 5wap:A (2.201) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112777 5wap:A (2.201) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112778 5wau:A (1.95) BS03 CU 7.1.1.9 GO:0004129 ... P00396 28698372
    112779 5wau:A (1.95) BS04 MG 7.1.1.9 GO:0004129 ... P00396 28698372
    112780 5wau:F (1.95) BS01 ZN ? GO:0005740 ... P00428 28698372
    112781 5wau:a (1.95) BS03 CU 7.1.1.9 GO:0004129 ... P00396 28698372
    112782 5wau:a (1.95) BS04 MG 7.1.1.9 GO:0004129 ... P00396 28698372
    112783 5wau:f (1.95) BS01 ZN ? GO:0005740 ... P00428 28698372
    112784 5waw:L (2.25) BS01 ZN N/A N/A N/A N/A
    112785 5waw:L (2.25) BS02 ZN N/A N/A N/A N/A
    112786 5waw:L (2.25) BS03 ZN N/A N/A N/A N/A
    112787 5wb3:A (2.203) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112788 5wb3:A (2.203) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112789 5wbn:A (1.64) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 N/A
    112790 5wbn:A (1.64) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 N/A
    112791 5wbn:A (1.64) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 N/A
    112792 5wbv:A (2.3) BS01 ZN 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 N/A
    112793 5wbv:B (2.3) BS02 ZN 2.1.1.361
    2.1.1.362    		 GO:0042799 ... Q4FZB7 N/A
    112794 5wbx:R (1.9) BS01 CA ? GO:0000086 ... P0DP23 29214998
    112795 5wbx:R (1.9) BS02 CA ? GO:0000086 ... P0DP23 29214998
    112796 5wc5:R (2.3) BS01 CA ? GO:0000086 ... P0DP23 29214998
    112797 5wc5:R (2.3) BS02 CA ? GO:0000086 ... P0DP23 29214998
    112798 5wcg:A (2.02) BS01 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 N/A
    112799 5wcg:A (2.02) BS02 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 N/A
    112800 5wcg:A (2.02) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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