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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    112401 5w3u:B (2.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112402 5w3u:C (2.5) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112403 5w3u:C (2.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112404 5w3u:D (2.5) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112405 5w3u:D (2.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112406 5w3v:A (2.243) BS04 ZN 3.5.4.38 GO:0000932 ... A0A1B2AH37 29044109
    112407 5w3v:B (2.243) BS03 ZN 3.5.4.38 GO:0000932 ... A0A1B2AH37 29044109
    112408 5w3v:C (2.243) BS03 ZN 3.5.4.38 GO:0000932 ... A0A1B2AH37 29044109
    112409 5w3v:D (2.243) BS03 ZN 3.5.4.38 GO:0000932 ... A0A1B2AH37 29044109
    112410 5w3w:A (2.95) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112411 5w3w:A (2.95) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112412 5w3w:B (2.95) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112413 5w3w:B (2.95) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112414 5w3w:C (2.95) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112415 5w3w:C (2.95) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112416 5w3w:D (2.95) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112417 5w3w:D (2.95) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112418 5w3x:B (2.0) BS01 ZN ? GO:0003700 ... C4B7M5 28737762
    112419 5w3x:D (2.0) BS01 ZN ? GO:0003700 ... C4B7M5 28737762
    112420 5w3z:A (2.55) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112421 5w3z:A (2.55) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112422 5w3z:B (2.55) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112423 5w3z:B (2.55) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112424 5w3z:C (2.55) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112425 5w3z:C (2.55) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112426 5w3z:D (2.55) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112427 5w3z:D (2.55) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112428 5w44:A (2.1) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112429 5w44:A (2.1) BS03 MG 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112430 5w45:A (2.486) BS01 ZN 3.5.4.38 GO:0003824 ... Q6NTF7 29491387
    112431 5w45:B (2.486) BS01 ZN 3.5.4.38 GO:0003824 ... Q6NTF7 29491387
    112432 5w4c:A (2.255) BS02 CA 1.8.1.9 GO:0000166 ... J9VRX9 N/A
    112433 5w4c:B (2.255) BS02 CA 1.8.1.9 GO:0000166 ... J9VRX9 N/A
    112434 5w4k:10 (2.7) BS03 MG ? GO:0003735 ... P60493 28846667
    112435 5w4k:10 (2.7) BS04 MG ? GO:0003735 ... P60493 28846667
    112436 5w4k:11 (2.7) BS03 MG ? GO:0003735 ... P60494 28846667
    112437 5w4k:11 (2.7) BS04 MG ? GO:0003735 ... P60494 28846667
    112438 5w4k:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 28846667
    112439 5w4k:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 28846667
    112440 5w4k:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 28846667
    112441 5w4k:15 (2.7) BS02 MG ? GO:0003735 ... P80339 28846667
    112442 5w4k:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 28846667
    112443 5w4k:16 (2.7) BS02 ZN ? GO:0000049 ... P35871 28846667
    112444 5w4k:16 (2.7) BS03 MG ? GO:0000049 ... P35871 28846667
    112445 5w4k:17 (2.7) BS02 MG ? GO:0003735 ... P80340 28846667
    112446 5w4k:17 (2.7) BS03 MG ? GO:0003735 ... P80340 28846667
    112447 5w4k:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 28846667
    112448 5w4k:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 28846667
    112449 5w4k:18 (2.7) BS04 MG ? GO:0003735 ... Q5SKU1 28846667
    112450 5w4k:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 28846667
    112451 5w4k:1D (2.7) BS03 MG ? GO:0002181 ... P60405 28846667
    112452 5w4k:1D (2.7) BS04 MG ? GO:0002181 ... P60405 28846667
    112453 5w4k:1D (2.7) BS05 MG ? GO:0002181 ... P60405 28846667
    112454 5w4k:1D (2.7) BS06 MG ? GO:0002181 ... P60405 28846667
    112455 5w4k:1D (2.7) BS07 MG ? GO:0002181 ... P60405 28846667
    112456 5w4k:1D (2.7) BS08 MG ? GO:0002181 ... P60405 28846667
    112457 5w4k:1D (2.7) BS09 MG ? GO:0002181 ... P60405 28846667
    112458 5w4k:1D (2.7) BS10 MG ? GO:0002181 ... P60405 28846667
    112459 5w4k:1D (2.7) BS11 MG ? GO:0002181 ... P60405 28846667
    112460 5w4k:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 28846667
    112461 5w4k:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 28846667
    112462 5w4k:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 28846667
    112463 5w4k:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 28846667
    112464 5w4k:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 28846667
    112465 5w4k:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 28846667
    112466 5w4k:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 28846667
    112467 5w4k:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 28846667
    112468 5w4k:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 28846667
    112469 5w4k:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 28846667
    112470 5w4k:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 28846667
    112471 5w4k:1F (2.7) BS10 MG ? GO:0003735 ... Q5SHN9 28846667
    112472 5w4k:1F (2.7) BS11 MG ? GO:0003735 ... Q5SHN9 28846667
    112473 5w4k:1F (2.7) BS12 MG ? GO:0003735 ... Q5SHN9 28846667
    112474 5w4k:1G (2.7) BS04 MG ? GO:0000049 ... Q5SHQ0 28846667
    112475 5w4k:1G (2.7) BS05 MG ? GO:0000049 ... Q5SHQ0 28846667
    112476 5w4k:1G (2.7) BS06 MG ? GO:0000049 ... Q5SHQ0 28846667
    112477 5w4k:1I (2.7) BS02 MG ? GO:0003735 ... Q5SLQ1 28846667
    112478 5w4k:1N (2.7) BS02 MG ? GO:0003729 ... P60488 28846667
    112479 5w4k:1N (2.7) BS03 MG ? GO:0003729 ... P60488 28846667
    112480 5w4k:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 28846667
    112481 5w4k:1O (2.7) BS04 MG ? GO:0003735 ... Q5SHP8 28846667
    112482 5w4k:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 28846667
    112483 5w4k:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 28846667
    112484 5w4k:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 28846667
    112485 5w4k:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 28846667
    112486 5w4k:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 28846667
    112487 5w4k:1P (2.7) BS07 MG ? GO:0003735 ... Q5SHQ7 28846667
    112488 5w4k:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 28846667
    112489 5w4k:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 28846667
    112490 5w4k:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 28846667
    112491 5w4k:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 28846667
    112492 5w4k:1Q (2.7) BS08 MG ? GO:0000049 ... P60489 28846667
    112493 5w4k:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 28846667
    112494 5w4k:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 28846667
    112495 5w4k:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 28846667
    112496 5w4k:1S (2.7) BS04 MG ? GO:0003735 ... Q5SHQ4 28846667
    112497 5w4k:1U (2.7) BS02 MG ? GO:0000027 ... P60491 28846667
    112498 5w4k:1U (2.7) BS03 MG ? GO:0000027 ... P60491 28846667
    112499 5w4k:1U (2.7) BS04 MG ? GO:0000027 ... P60491 28846667
    112500 5w4k:1U (2.7) BS05 MG ? GO:0000027 ... P60491 28846667
    112501 5w4k:1U (2.7) BS06 MG ? GO:0000027 ... P60491 28846667
    112502 5w4k:1U (2.7) BS07 MG ? GO:0000027 ... P60491 28846667
    112503 5w4k:1U (2.7) BS08 MG ? GO:0000027 ... P60491 28846667
    112504 5w4k:1U (2.7) BS09 MG ? GO:0000027 ... P60491 28846667
    112505 5w4k:1V (2.7) BS02 MG ? GO:0003723 ... P60492 28846667
    112506 5w4k:1V (2.7) BS03 MG ? GO:0003723 ... P60492 28846667
    112507 5w4k:1V (2.7) BS04 MG ? GO:0003723 ... P60492 28846667
    112508 5w4k:1V (2.7) BS05 MG ? GO:0003723 ... P60492 28846667
    112509 5w4k:1V (2.7) BS06 MG ? GO:0003723 ... P60492 28846667
    112510 5w4k:1V (2.7) BS07 MG ? GO:0003723 ... P60492 28846667
    112511 5w4k:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 28846667
    112512 5w4k:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 28846667
    112513 5w4k:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 28846667
    112514 5w4k:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 28846667
    112515 5w4k:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 28846667
    112516 5w4k:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 28846667
    112517 5w4k:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 28846667
    112518 5w4k:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 28846667
    112519 5w4k:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 28846667
    112520 5w4k:1Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 28846667
    112521 5w4k:1Y (2.7) BS03 MG ? GO:0003723 ... Q5SHP9 28846667
    112522 5w4k:1b (2.7) BS02 MG ? GO:0003735 ... P80371 28846667
    112523 5w4k:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 28846667
    112524 5w4k:1e (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 28846667
    112525 5w4k:1f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 28846667
    112526 5w4k:1k (2.7) BS02 MG ? GO:0003735 ... P80376 28846667
    112527 5w4k:1l (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 28846667
    112528 5w4k:1m (2.7) BS04 MG ? GO:0000049 ... P80377 28846667
    112529 5w4k:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 28846667
    112530 5w4k:21 (2.7) BS03 MG ? GO:0003735 ... P60494 28846667
    112531 5w4k:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 28846667
    112532 5w4k:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 28846667
    112533 5w4k:25 (2.7) BS02 MG ? GO:0003735 ... P80339 28846667
    112534 5w4k:25 (2.7) BS03 ZN ? GO:0003735 ... P80339 28846667
    112535 5w4k:25 (2.7) BS04 MG ? GO:0003735 ... P80339 28846667
    112536 5w4k:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 28846667
    112537 5w4k:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 28846667
    112538 5w4k:2D (2.7) BS03 MG ? GO:0002181 ... P60405 28846667
    112539 5w4k:2D (2.7) BS04 MG ? GO:0002181 ... P60405 28846667
    112540 5w4k:2D (2.7) BS05 MG ? GO:0002181 ... P60405 28846667
    112541 5w4k:2D (2.7) BS06 MG ? GO:0002181 ... P60405 28846667
    112542 5w4k:2D (2.7) BS07 MG ? GO:0002181 ... P60405 28846667
    112543 5w4k:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 28846667
    112544 5w4k:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 28846667
    112545 5w4k:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 28846667
    112546 5w4k:2F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 28846667
    112547 5w4k:2F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 28846667
    112548 5w4k:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 28846667
    112549 5w4k:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 28846667
    112550 5w4k:2Q (2.7) BS06 MG ? GO:0000049 ... P60489 28846667
    112551 5w4k:2U (2.7) BS02 MG ? GO:0000027 ... P60491 28846667
    112552 5w4k:2U (2.7) BS03 MG ? GO:0000027 ... P60491 28846667
    112553 5w4k:2V (2.7) BS02 MG ? GO:0003723 ... P60492 28846667
    112554 5w4k:2V (2.7) BS03 MG ? GO:0003723 ... P60492 28846667
    112555 5w4k:2V (2.7) BS04 MG ? GO:0003723 ... P60492 28846667
    112556 5w4k:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 28846667
    112557 5w4k:2W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 28846667
    112558 5w4k:2X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 28846667
    112559 5w4k:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 28846667
    112560 5w4k:2Z (2.7) BS03 MG ? GO:0003723 ... Q5SHZ1 28846667
    112561 5w4k:2d (2.7) BS03 MG ? GO:0003723 ... P80373 28846667
    112562 5w4k:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 28846667
    112563 5w4k:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 28846667
    112564 5w4k:2k (2.7) BS02 MG ? GO:0003735 ... P80376 28846667
    112565 5w4k:2l (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 28846667
    112566 5w4k:2l (2.7) BS04 MG ? GO:0000049 ... Q5SHN3 28846667
    112567 5w4k:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 28846667
    112568 5w4k:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 28846667
    112569 5w4k:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 28846667
    112570 5w4k:2t (2.7) BS02 MG ? GO:0003723 ... P80380 28846667
    112571 5w4s:A (-1.00) BS02 CA 2.7.11.13 N/A P05696 29642029
    112572 5w4s:A (-1.00) BS03 CA 2.7.11.13 N/A P05696 29642029
    112573 5w4t:A (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    112574 5w4t:A (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    112575 5w4t:A (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    112576 5w4t:A (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    112577 5w4t:A (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    112578 5w4t:A (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    112579 5w4t:A (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    112580 5w4t:B (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    112581 5w4t:B (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    112582 5w4t:B (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    112583 5w4t:B (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    112584 5w4t:B (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    112585 5w4t:B (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    112586 5w4t:B (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    112587 5w4t:C (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    112588 5w4t:C (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    112589 5w4t:C (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    112590 5w4t:C (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    112591 5w4t:C (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    112592 5w4t:C (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    112593 5w4t:C (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    112594 5w4t:D (2.65) BS01 CA ? GO:0005509 ... F1R7G8 30033219
    112595 5w4t:D (2.65) BS02 CA ? GO:0005509 ... F1R7G8 30033219
    112596 5w4t:D (2.65) BS03 CA ? GO:0005509 ... F1R7G8 30033219
    112597 5w4t:D (2.65) BS04 CA ? GO:0005509 ... F1R7G8 30033219
    112598 5w4t:D (2.65) BS05 CA ? GO:0005509 ... F1R7G8 30033219
    112599 5w4t:D (2.65) BS06 CA ? GO:0005509 ... F1R7G8 30033219
    112600 5w4t:D (2.65) BS07 CA ? GO:0005509 ... F1R7G8 30033219
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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