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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    112201 5vvm:A (3.54) BS06 CA ? GO:0005509 ... Q9H251 30033219
    112202 5vvm:B (3.54) BS01 CA ? GO:0005509 ... Q9H251 30033219
    112203 5vvm:B (3.54) BS02 CA ? GO:0005509 ... Q9H251 30033219
    112204 5vvm:B (3.54) BS03 CA ? GO:0005509 ... Q9H251 30033219
    112205 5vvm:B (3.54) BS04 CA ? GO:0005509 ... Q9H251 30033219
    112206 5vvm:B (3.54) BS05 CA ? GO:0005509 ... Q9H251 30033219
    112207 5vvm:B (3.54) BS06 CA ? GO:0005509 ... Q9H251 30033219
    112208 5vvn:A (2.4) BS04 ZN 1.14.13.39 GO:0004517 ... P29473 28776992
    112209 5vvn:B (2.4) BS02 ZN 1.14.13.39 GO:0004517 ... P29473 28776992
    112210 5vvr:A (5.8) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29168508
    112211 5vvr:B (5.8) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 29168508
    112212 5vvr:C (5.8) BS01 ZN ? GO:0000428 ... P16370 29168508
    112213 5vvr:I (5.8) BS01 ZN ? GO:0000428 ... P27999 29168508
    112214 5vvr:J (5.8) BS01 ZN ? GO:0000428 ... P22139 29168508
    112215 5vvr:L (5.8) BS01 ZN ? GO:0000428 ... P40422 29168508
    112216 5vvs:A (6.4) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 29168508
    112217 5vvs:A (6.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 29168508
    112218 5vvs:B (6.4) BS02 ZN 2.7.7.6 GO:0000428 ... P08518 29168508
    112219 5vvs:C (6.4) BS01 ZN ? GO:0000428 ... P16370 29168508
    112220 5vvs:I (6.4) BS01 ZN ? GO:0000428 ... P27999 29168508
    112221 5vvs:J (6.4) BS01 ZN ? GO:0000428 ... P22139 29168508
    112222 5vvs:L (6.4) BS01 ZN ? GO:0000428 ... P40422 29168508
    112223 5vwm:A (1.8) BS02 ZN 3.5.1.108 GO:0006796 ... P47205 N/A
    112224 5vwm:A (1.8) BS03 CA 3.5.1.108 GO:0006796 ... P47205 N/A
    112225 5vx0:A (1.599) BS02 MG ? GO:0042981 ... Q16611 29149594
    112226 5vx0:A (1.599) BS03 MG ? GO:0042981 ... Q16611 29149594
    112227 5vx0:A (1.599) BS04 MG ? GO:0042981 ... Q16611 29149594
    112228 5vxa:A (2.1) BS01 ZN 3.1.7.2 GO:0005515 ... Q8N4P3 32462112
    112229 5vxa:B (2.1) BS01 ZN 3.1.7.2 GO:0005515 ... Q8N4P3 32462112
    112230 5vxc:A (1.872) BS02 MG 2.3.3.-
    2.3.3.9
    3.1.2.30
    4.1.3.25    		 GO:0000287 ... Q8N0X4 29056341
    112231 5vxe:A (1.66) BS02 MN 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    112232 5vxg:A (2.07) BS02 MN 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    112233 5vxi:A (2.08) BS01 MN 2.3.3.20 GO:0004315 ... Q8PDX2 29025976
    112234 5vxt:A (1.75) BS01 FE 1.13.11.1 GO:0003824 ... B1Z4S0 N/A
    112235 5vxt:B (1.75) BS01 FE 1.13.11.1 GO:0003824 ... B1Z4S0 N/A
    112236 5vxz:A (2.3) BS01 CA ? N/A Q14393 27893463
    112237 5vxz:B (2.3) BS01 CA ? N/A Q14393 27893463
    112238 5vyb:A (2.4) BS02 CA ? N/A Q6EIG7 28652405
    112239 5vyb:A (2.4) BS03 CA ? N/A Q6EIG7 28652405
    112240 5vyc:f2 (6.0) BS03 ZN ? GO:0003735 ... Q5RKT7 28723557
    112241 5vyc:f3 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    112242 5vyc:f4 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    112243 5vyc:f5 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    112244 5vyc:f6 (6.0) BS02 ZN ? GO:0003735 ... Q5RKT7 28723557
    112245 5vyd:A (2.3) BS01 ZN 3.1.4.- GO:0004114 ... F2TZN0 28976747
    112246 5vyd:B (2.3) BS01 ZN 3.1.4.- GO:0004114 ... F2TZN0 28976747
    112247 5vyg:A (2.2) BS03 CA 3.4.21.22 GO:0005509 ... P00740 28729422
    112248 5vyg:B (2.2) BS04 CA 3.4.21.22 GO:0005509 ... P00740 28729422
    112249 5vyg:C (2.2) BS04 CA 3.4.21.22 GO:0005509 ... P00740 28729422
    112250 5vyw:A (3.1) BS01 MN N/A GO:0003824 ... N/A 28808024
    112251 5vyw:B (3.1) BS01 MN N/A GO:0003824 ... N/A 28808024
    112252 5vyw:C (3.1) BS01 MN N/A GO:0003824 ... N/A 28808024
    112253 5vyw:D (3.1) BS01 MN N/A GO:0003824 ... N/A 28808024
    112254 5vyz:A (2.3) BS01 MN N/A GO:0003824 ... N/A 28808024
    112255 5vyz:A (2.3) BS03 MG N/A GO:0003824 ... N/A 28808024
    112256 5vyz:B (2.3) BS02 MN N/A GO:0003824 ... N/A 28808024
    112257 5vyz:B (2.3) BS04 MG N/A GO:0003824 ... N/A 28808024
    112258 5vyz:C (2.3) BS01 MN N/A GO:0003824 ... N/A 28808024
    112259 5vyz:C (2.3) BS03 MG N/A GO:0003824 ... N/A 28808024
    112260 5vyz:D (2.3) BS02 MN N/A GO:0003824 ... N/A 28808024
    112261 5vyz:D (2.3) BS04 MG N/A GO:0003824 ... N/A 28808024
    112262 5vz0:A (2.0) BS01 MN N/A GO:0003824 ... N/A 28808024
    112263 5vz0:A (2.0) BS03 MG N/A GO:0003824 ... N/A 28808024
    112264 5vz0:B (2.0) BS02 MN N/A GO:0003824 ... N/A 28808024
    112265 5vz0:B (2.0) BS04 MG N/A GO:0003824 ... N/A 28808024
    112266 5vz0:C (2.0) BS01 MN N/A GO:0003824 ... N/A 28808024
    112267 5vz0:D (2.0) BS02 MN N/A GO:0003824 ... N/A 28808024
    112268 5vz0:D (2.0) BS04 MG N/A GO:0003824 ... N/A 28808024
    112269 5vz1:C (2.112) BS01 ZN N/A N/A N/A N/A
    112270 5vz7:A (1.551) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112271 5vz7:A (1.551) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112272 5vz8:A (1.601) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112273 5vz8:A (1.601) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112274 5vz9:A (1.65) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112275 5vza:A (1.501) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112276 5vza:A (1.501) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112277 5vzb:A (1.5) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112278 5vzb:A (1.5) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112279 5vzc:A (1.552) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112280 5vzd:A (1.602) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112281 5vzd:A (1.602) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112282 5vze:A (1.506) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112283 5vze:A (1.506) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112284 5vzf:A (1.65) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112285 5vzf:A (1.65) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112286 5vzg:A (1.85) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112287 5vzg:A (1.85) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112288 5vzh:A (1.95) BS04 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112289 5vzh:A (1.95) BS05 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112290 5vzi:A (1.5) BS06 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112291 5vzi:A (1.5) BS07 MG 2.7.7.7 GO:0003677 ... Q9NP87 28911097
    112292 5vzj:K (3.3) BS02 ZN 3.1.13.-
    3.1.26.-    		 GO:0000049 ... Q08162 28742025
    112293 5vzt:B (2.7) BS01 ZN ? N/A Q5XUX0 29279382
    112294 5vzt:D (2.7) BS01 ZN ? N/A Q5XUX0 29279382
    112295 5vzu:B (2.7) BS02 ZN ? N/A Q5XUX0 29279382
    112296 5vzu:D (2.7) BS02 ZN ? N/A Q5XUX0 29279382
    112297 5vzv:A (1.812) BS01 ZN 2.3.2.27 N/A P36406 28681414
    112298 5vzv:A (1.812) BS02 ZN 2.3.2.27 N/A P36406 28681414
    112299 5vzv:B (1.812) BS01 ZN 2.3.2.27 N/A P36406 28681414
    112300 5vzv:B (1.812) BS02 ZN 2.3.2.27 N/A P36406 28681414
    112301 5vzv:C (1.812) BS01 ZN 2.3.2.27 N/A P36406 28681414
    112302 5vzv:C (1.812) BS02 ZN 2.3.2.27 N/A P36406 28681414
    112303 5vzw:F (2.278) BS01 ZN 2.3.2.27 N/A P36406 28681414
    112304 5vzw:F (2.278) BS02 ZN 2.3.2.27 N/A P36406 28681414
    112305 5vzw:G (2.278) BS01 ZN 2.3.2.27 N/A P36406 28681414
    112306 5vzw:G (2.278) BS02 ZN 2.3.2.27 N/A P36406 28681414
    112307 5w0b:A (2.614) BS01 ZN 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    112308 5w0g:A (1.07) BS01 ZN ? GO:0003676 ... P26368 28850223
    112309 5w0m:A (2.298) BS02 ZN 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    112310 5w0m:C (2.298) BS02 ZN 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    112311 5w0n:A (2.497) BS01 MG 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    112312 5w0n:A (2.497) BS04 ZN 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    112313 5w0n:B (2.497) BS01 MG 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    112314 5w0n:B (2.497) BS04 ZN 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    112315 5w0n:C (2.497) BS01 MG 2.7.7.52 GO:0003676 ... Q5VYS8 28671666
    112316 5w0r:A (2.4) BS01 ZN 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112317 5w0r:A (2.4) BS02 CA 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112318 5w0r:B (2.4) BS01 ZN 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112319 5w0r:B (2.4) BS02 CA 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112320 5w0u:A (2.9) BS01 ZN 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112321 5w0u:A (2.9) BS03 CA 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112322 5w0u:B (2.9) BS03 ZN 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112323 5w0u:B (2.9) BS05 CA 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112324 5w0w:F (3.8) BS01 MN 3.1.3.16 GO:0000159 ... P67775 29273778
    112325 5w0z:A (3.61) BS01 ZN 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112326 5w0z:B (3.61) BS01 ZN 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112327 5w15:D (1.75) BS01 MG ? GO:0016787 ... B1YPY7 N/A
    112328 5w1c:A (3.18) BS01 ZN 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112329 5w1c:A (3.18) BS03 CA 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112330 5w1c:B (3.18) BS02 ZN 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112331 5w1c:B (3.18) BS04 CA 3.5.4.38 GO:0003824 ... P0AEX9
    Q9GZX7    		 28757211
    112332 5w1d:A (3.35) BS01 CA ? GO:0005509 ... Q99PJ1 32963095
    112333 5w1d:A (3.35) BS02 CA ? GO:0005509 ... Q99PJ1 32963095
    112334 5w1d:A (3.35) BS03 CA ? GO:0005509 ... Q99PJ1 32963095
    112335 5w1d:A (3.35) BS04 CA ? GO:0005509 ... Q99PJ1 32963095
    112336 5w1d:A (3.35) BS05 CA ? GO:0005509 ... Q99PJ1 32963095
    112337 5w1d:A (3.35) BS06 CA ? GO:0005509 ... Q99PJ1 32963095
    112338 5w1f:A (2.6) BS01 CA ? GO:0002523 ... P05109 28573847
    112339 5w1f:A (2.6) BS02 NI ? GO:0002523 ... P05109 28573847
    112340 5w1f:B (2.6) BS01 NI ? GO:0002523 ... P06702 28573847
    112341 5w1f:B (2.6) BS02 CA ? GO:0002523 ... P06702 28573847
    112342 5w1f:C (2.6) BS01 NI ? GO:0002523 ... P05109 28573847
    112343 5w1f:C (2.6) BS02 CA ? GO:0002523 ... P05109 28573847
    112344 5w1f:C (2.6) BS03 NI ? GO:0002523 ... P05109 28573847
    112345 5w1f:D (2.6) BS01 NI ? GO:0002523 ... P06702 28573847
    112346 5w1f:D (2.6) BS02 NI ? GO:0002523 ... P06702 28573847
    112347 5w1f:D (2.6) BS03 CA ? GO:0002523 ... P06702 28573847
    112348 5w1f:D (2.6) BS04 CA ? GO:0002523 ... P06702 28573847
    112349 5w1f:E (2.6) BS01 NI ? GO:0002523 ... P05109 28573847
    112350 5w1f:E (2.6) BS02 CA ? GO:0002523 ... P05109 28573847
    112351 5w1f:E (2.6) BS03 NI ? GO:0002523 ... P05109 28573847
    112352 5w1f:F (2.6) BS01 NI ? GO:0002523 ... P06702 28573847
    112353 5w1f:F (2.6) BS02 NI ? GO:0002523 ... P06702 28573847
    112354 5w1f:F (2.6) BS03 CA ? GO:0002523 ... P06702 28573847
    112355 5w1f:F (2.6) BS04 CA ? GO:0002523 ... P06702 28573847
    112356 5w1f:G (2.6) BS01 CA ? GO:0002523 ... P05109 28573847
    112357 5w1f:G (2.6) BS02 NI ? GO:0002523 ... P05109 28573847
    112358 5w1f:H (2.6) BS01 NI ? GO:0002523 ... P06702 28573847
    112359 5w1f:H (2.6) BS02 CA ? GO:0002523 ... P06702 28573847
    112360 5w1l:A (2.88) BS02 AU 1.8.1.9 GO:0000166 ... Q869D7 28463568
    112361 5w1l:B (2.88) BS02 AU 1.8.1.9 GO:0000166 ... Q869D7 28463568
    112362 5w1s:D (3.805) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112363 5w1s:D (3.805) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112364 5w1s:D (3.805) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112365 5w1s:J (3.805) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112366 5w1s:J (3.805) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112367 5w1s:J (3.805) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112368 5w1t:D (4.5) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112369 5w1t:D (4.5) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112370 5w1t:D (4.5) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112371 5w1t:J (4.5) BS01 MG 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112372 5w1t:J (4.5) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112373 5w1t:J (4.5) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 29478808
    112374 5w1t:M (4.5) BS01 ZN ? GO:0005737 ... P0ABS1 29478808
    112375 5w1t:N (4.5) BS01 ZN ? GO:0005737 ... P0ABS1 29478808
    112376 5w21:A (3.0) BS01 ZN 3.2.1.31 GO:0004553 ... Q9UEF7 29342138
    112377 5w23:J (3.4) BS01 ZN N/A N/A N/A 29187732
    112378 5w23:N (3.4) BS01 ZN N/A N/A N/A 29187732
    112379 5w26:A (1.9) BS02 CA 3.2.1.18 GO:0004308 ... P03472 29397718
    112380 5w2a:A (2.9) BS03 MG 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    112381 5w2a:B (2.9) BS03 MG 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    112382 5w2c:A (2.5) BS04 MG 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    112383 5w2c:A (2.5) BS05 MG 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    112384 5w2c:A (2.5) BS06 MG 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    112385 5w2c:B (2.5) BS03 MG 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    112386 5w2c:B (2.5) BS04 MG 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    112387 5w2c:B (2.5) BS05 MG 2.7.7.7 GO:0003684 ... Q9UBT6 28972744
    112388 5w2m:B (3.7) BS02 ZN 3.5.4.38 GO:0003824 ... Q8IUX4 29191651
    112389 5w2u:A (2.0) BS02 CA 3.2.1.18 GO:0004308 ... P03472 29397718
    112390 5w2w:A (1.85) BS02 CA 3.2.1.18 GO:0004308 ... P03472 29397718
    112391 5w2y:A (2.39) BS02 CA 3.2.1.18 GO:0004308 ... P03472 29397718
    112392 5w3i:A (1.95) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112393 5w3i:A (1.95) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29215062
    112394 5w3k:A (1.589) BS02 MG 1.1.1.86 GO:0000287 ... Q2FWK4 28975665
    112395 5w3k:A (1.589) BS03 MG 1.1.1.86 GO:0000287 ... Q2FWK4 28975665
    112396 5w3k:B (1.589) BS04 MG 1.1.1.86 GO:0000287 ... Q2FWK4 28975665
    112397 5w3q:A (1.401) BS02 CA 1.5.1.3 GO:0004146 ... P0ABQ4 28737940
    112398 5w3u:A (2.5) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112399 5w3u:A (2.5) BS02 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112400 5w3u:B (2.5) BS01 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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