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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    111801 5vp2:1N (2.8) BS04 MG ? GO:0003729 ... P60488 28505372
    111802 5vp2:1O (2.8) BS03 MG ? GO:0003735 ... Q5SHP8 28505372
    111803 5vp2:1P (2.8) BS02 MG ? GO:0003735 ... Q5SHQ7 28505372
    111804 5vp2:1P (2.8) BS03 MG ? GO:0003735 ... Q5SHQ7 28505372
    111805 5vp2:1P (2.8) BS04 MG ? GO:0003735 ... Q5SHQ7 28505372
    111806 5vp2:1P (2.8) BS05 MG ? GO:0003735 ... Q5SHQ7 28505372
    111807 5vp2:1Q (2.8) BS04 MG ? GO:0000049 ... P60489 28505372
    111808 5vp2:1Q (2.8) BS05 MG ? GO:0000049 ... P60489 28505372
    111809 5vp2:1Q (2.8) BS06 MG ? GO:0000049 ... P60489 28505372
    111810 5vp2:1Q (2.8) BS07 MG ? GO:0000049 ... P60489 28505372
    111811 5vp2:1Q (2.8) BS08 MG ? GO:0000049 ... P60489 28505372
    111812 5vp2:1R (2.8) BS02 MG ? GO:0003735 ... Q9Z9H5 28505372
    111813 5vp2:1R (2.8) BS03 MG ? GO:0003735 ... Q9Z9H5 28505372
    111814 5vp2:1S (2.8) BS03 MG ? GO:0003735 ... Q5SHQ4 28505372
    111815 5vp2:1S (2.8) BS04 MG ? GO:0003735 ... Q5SHQ4 28505372
    111816 5vp2:1T (2.8) BS03 MG ? GO:0003735 ... P60490 28505372
    111817 5vp2:1U (2.8) BS02 MG ? GO:0000027 ... P60491 28505372
    111818 5vp2:1U (2.8) BS03 MG ? GO:0000027 ... P60491 28505372
    111819 5vp2:1U (2.8) BS04 MG ? GO:0000027 ... P60491 28505372
    111820 5vp2:1U (2.8) BS05 MG ? GO:0000027 ... P60491 28505372
    111821 5vp2:1U (2.8) BS06 MG ? GO:0000027 ... P60491 28505372
    111822 5vp2:1U (2.8) BS07 MG ? GO:0000027 ... P60491 28505372
    111823 5vp2:1V (2.8) BS02 MG ? GO:0003723 ... P60492 28505372
    111824 5vp2:1V (2.8) BS03 MG ? GO:0003723 ... P60492 28505372
    111825 5vp2:1V (2.8) BS04 MG ? GO:0003723 ... P60492 28505372
    111826 5vp2:1V (2.8) BS05 MG ? GO:0003723 ... P60492 28505372
    111827 5vp2:1V (2.8) BS06 MG ? GO:0003723 ... P60492 28505372
    111828 5vp2:1W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 28505372
    111829 5vp2:1W (2.8) BS03 MG ? GO:0003735 ... Q5SHP3 28505372
    111830 5vp2:1W (2.8) BS04 MG ? GO:0003735 ... Q5SHP3 28505372
    111831 5vp2:1X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 28505372
    111832 5vp2:1X (2.8) BS03 MG ? GO:0000027 ... Q5SHP0 28505372
    111833 5vp2:1X (2.8) BS04 MG ? GO:0000027 ... Q5SHP0 28505372
    111834 5vp2:1X (2.8) BS05 MG ? GO:0000027 ... Q5SHP0 28505372
    111835 5vp2:1X (2.8) BS06 MG ? GO:0000027 ... Q5SHP0 28505372
    111836 5vp2:1Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 28505372
    111837 5vp2:1Y (2.8) BS03 MG ? GO:0003723 ... Q5SHP9 28505372
    111838 5vp2:1b (2.8) BS02 MG ? GO:0003735 ... P80371 28505372
    111839 5vp2:1e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 28505372
    111840 5vp2:1e (2.8) BS03 MG ? GO:0003723 ... Q5SHQ5 28505372
    111841 5vp2:1f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 28505372
    111842 5vp2:1k (2.8) BS02 MG ? GO:0003735 ... P80376 28505372
    111843 5vp2:1l (2.8) BS02 MG ? GO:0000049 ... Q5SHN3 28505372
    111844 5vp2:1n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 28505372
    111845 5vp2:1n (2.8) BS03 MG ? GO:0003735 ... P0DOY6 28505372
    111846 5vp2:21 (2.8) BS03 MG ? GO:0003735 ... P60494 28505372
    111847 5vp2:23 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 28505372
    111848 5vp2:23 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 28505372
    111849 5vp2:24 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 28505372
    111850 5vp2:25 (2.8) BS02 MG ? GO:0003735 ... P80339 28505372
    111851 5vp2:25 (2.8) BS03 ZN ? GO:0003735 ... P80339 28505372
    111852 5vp2:26 (2.8) BS02 ZN ? GO:0000049 ... P35871 28505372
    111853 5vp2:26 (2.8) BS03 MG ? GO:0000049 ... P35871 28505372
    111854 5vp2:29 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 28505372
    111855 5vp2:2D (2.8) BS03 MG ? GO:0002181 ... P60405 28505372
    111856 5vp2:2D (2.8) BS04 MG ? GO:0002181 ... P60405 28505372
    111857 5vp2:2D (2.8) BS05 MG ? GO:0002181 ... P60405 28505372
    111858 5vp2:2D (2.8) BS06 MG ? GO:0002181 ... P60405 28505372
    111859 5vp2:2D (2.8) BS07 MG ? GO:0002181 ... P60405 28505372
    111860 5vp2:2F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 28505372
    111861 5vp2:2F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 28505372
    111862 5vp2:2F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 28505372
    111863 5vp2:2Q (2.8) BS04 MG ? GO:0000049 ... P60489 28505372
    111864 5vp2:2Q (2.8) BS05 MG ? GO:0000049 ... P60489 28505372
    111865 5vp2:2Q (2.8) BS06 MG ? GO:0000049 ... P60489 28505372
    111866 5vp2:2U (2.8) BS02 MG ? GO:0000027 ... P60491 28505372
    111867 5vp2:2U (2.8) BS03 MG ? GO:0000027 ... P60491 28505372
    111868 5vp2:2U (2.8) BS04 MG ? GO:0000027 ... P60491 28505372
    111869 5vp2:2V (2.8) BS02 MG ? GO:0003723 ... P60492 28505372
    111870 5vp2:2W (2.8) BS02 MG ? GO:0003735 ... Q5SHP3 28505372
    111871 5vp2:2X (2.8) BS02 MG ? GO:0000027 ... Q5SHP0 28505372
    111872 5vp2:2Y (2.8) BS02 ZN ? GO:0003723 ... Q5SHP9 28505372
    111873 5vp2:2Z (2.8) BS03 MG ? GO:0003723 ... Q5SHZ1 28505372
    111874 5vp2:2d (2.8) BS03 MG ? GO:0003723 ... P80373 28505372
    111875 5vp2:2e (2.8) BS02 MG ? GO:0003723 ... Q5SHQ5 28505372
    111876 5vp2:2f (2.8) BS02 MG ? GO:0003735 ... Q5SLP8 28505372
    111877 5vp2:2k (2.8) BS02 MG ? GO:0003735 ... P80376 28505372
    111878 5vp2:2l (2.8) BS03 MG ? GO:0000049 ... Q5SHN3 28505372
    111879 5vp2:2n (2.8) BS02 ZN ? GO:0003735 ... P0DOY6 28505372
    111880 5vp2:2q (2.8) BS02 MG ? GO:0003735 ... P0DOY7 28505372
    111881 5vp2:2q (2.8) BS03 MG ? GO:0003735 ... P0DOY7 28505372
    111882 5vp2:2r (2.8) BS02 MG ? GO:0003735 ... Q5SLQ0 28505372
    111883 5vp2:2t (2.8) BS02 MG ? GO:0003723 ... P80380 28505372
    111884 5vp8:A (2.2) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29691337
    111885 5vp9:A (1.859) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13    		 GO:0006508 ... P26664 28594175
    111886 5vpg:A (1.95) BS01 CA ? GO:0006508 ... Q3HWZ5 22210776
    111887 5vph:A (2.5) BS01 CA 3.4.22.65 GO:0006508 ... P08176 22210776
    111888 5vpl:A (1.9) BS01 CA 3.4.22.65 GO:0006508 ... P16311 22210776
    111889 5vpo:QD (3.34) BS02 ZN ? GO:0003723 ... P80373 30262649
    111890 5vpo:QF (3.34) BS02 MG ? GO:0003735 ... Q5SLP8 30262649
    111891 5vpo:QM (3.34) BS03 MG ? GO:0000049 ... P80377 30262649
    111892 5vpo:QN (3.34) BS02 ZN ? GO:0003735 ... P0DOY6 30262649
    111893 5vpo:RP (3.34) BS02 MG ? GO:0003735 ... Q5SHQ7 30262649
    111894 5vpo:RP (3.34) BS03 MG ? GO:0003735 ... Q5SHQ7 30262649
    111895 5vpo:XD (3.34) BS02 ZN ? GO:0003723 ... P80373 30262649
    111896 5vpo:XM (3.34) BS02 MG ? GO:0000049 ... P80377 30262649
    111897 5vpo:XN (3.34) BS02 ZN ? GO:0003735 ... P0DOY6 30262649
    111898 5vpo:YP (3.34) BS02 MG ? GO:0003735 ... Q5SHQ7 30262649
    111899 5vpo:YX (3.34) BS02 MG ? GO:0000027 ... Q5SHP0 30262649
    111900 5vpp:QD (3.9) BS02 ZN ? GO:0003723 ... P80373 30262649
    111901 5vpp:QD (3.9) BS03 MG ? GO:0003723 ... P80373 30262649
    111902 5vpp:QD (3.9) BS04 MG ? GO:0003723 ... P80373 30262649
    111903 5vpp:QD (3.9) BS05 MG ? GO:0003723 ... P80373 30262649
    111904 5vpp:QD (3.9) BS06 ZN ? GO:0003723 ... P80373 30262649
    111905 5vpp:QE (3.9) BS02 MG ? GO:0003723 ... Q5SHQ5 30262649
    111906 5vpp:R1 (3.9) BS02 MG ? GO:0003735 ... P60494 30262649
    111907 5vpp:R1 (3.9) BS03 MG ? GO:0003735 ... P60494 30262649
    111908 5vpp:R3 (3.9) BS03 MG ? GO:0003735 ... Q5SHQ6 30262649
    111909 5vpp:R6 (3.9) BS02 MG ? GO:0000049 ... P35871 30262649
    111910 5vpp:R8 (3.9) BS02 MG ? GO:0003735 ... Q5SKU1 30262649
    111911 5vpp:R8 (3.9) BS03 MG ? GO:0003735 ... Q5SKU1 30262649
    111912 5vpp:RD (3.9) BS03 MG ? GO:0002181 ... P60405 30262649
    111913 5vpp:RD (3.9) BS04 MG ? GO:0002181 ... P60405 30262649
    111914 5vpp:RD (3.9) BS05 MG ? GO:0002181 ... P60405 30262649
    111915 5vpp:RD (3.9) BS06 MG ? GO:0002181 ... P60405 30262649
    111916 5vpp:RD (3.9) BS07 MG ? GO:0002181 ... P60405 30262649
    111917 5vpp:RD (3.9) BS08 MG ? GO:0002181 ... P60405 30262649
    111918 5vpp:RD (3.9) BS09 MG ? GO:0002181 ... P60405 30262649
    111919 5vpp:RE (3.9) BS02 MG ? GO:0003735 ... Q5SHN8 30262649
    111920 5vpp:RE (3.9) BS03 MG ? GO:0003735 ... Q5SHN8 30262649
    111921 5vpp:RE (3.9) BS04 MG ? GO:0003735 ... Q5SHN8 30262649
    111922 5vpp:RE (3.9) BS05 MG ? GO:0003735 ... Q5SHN8 30262649
    111923 5vpp:RF (3.9) BS02 MG ? GO:0003735 ... Q5SHN9 30262649
    111924 5vpp:RF (3.9) BS03 MG ? GO:0003735 ... Q5SHN9 30262649
    111925 5vpp:RF (3.9) BS04 MG ? GO:0003735 ... Q5SHN9 30262649
    111926 5vpp:RQ (3.9) BS03 MG ? GO:0000049 ... P60489 30262649
    111927 5vpp:RQ (3.9) BS04 MG ? GO:0000049 ... P60489 30262649
    111928 5vpp:RT (3.9) BS03 MG ? GO:0003735 ... P60490 30262649
    111929 5vpp:RU (3.9) BS02 MG ? GO:0000027 ... P60491 30262649
    111930 5vpp:RY (3.9) BS02 MG ? GO:0003723 ... Q5SHP9 30262649
    111931 5vpp:RY (3.9) BS03 MG ? GO:0003723 ... Q5SHP9 30262649
    111932 5vpp:XC (3.9) BS02 MG ? GO:0003676 ... P80372 30262649
    111933 5vpp:XD (3.9) BS02 ZN ? GO:0003723 ... P80373 30262649
    111934 5vpp:XD (3.9) BS03 MG ? GO:0003723 ... P80373 30262649
    111935 5vpp:XL (3.9) BS02 MG ? GO:0000049 ... Q5SHN3 30262649
    111936 5vpp:XM (3.9) BS02 MG ? GO:0000049 ... P80377 30262649
    111937 5vpp:XP (3.9) BS02 MG ? GO:0003735 ... Q5SJH3 30262649
    111938 5vpp:Y1 (3.9) BS02 MG ? GO:0003735 ... P60494 30262649
    111939 5vpp:Y8 (3.9) BS02 MG ? GO:0003735 ... Q5SKU1 30262649
    111940 5vpp:Y9 (3.9) BS02 ZN ? GO:0003735 ... Q5SHR2 30262649
    111941 5vpp:YD (3.9) BS03 MG ? GO:0002181 ... P60405 30262649
    111942 5vpp:YD (3.9) BS04 MG ? GO:0002181 ... P60405 30262649
    111943 5vpp:YE (3.9) BS02 MG ? GO:0003735 ... Q5SHN8 30262649
    111944 5vpp:YE (3.9) BS03 MG ? GO:0003735 ... Q5SHN8 30262649
    111945 5vpp:YQ (3.9) BS03 MG ? GO:0000049 ... P60489 30262649
    111946 5vpp:YR (3.9) BS02 MG ? GO:0003735 ... Q9Z9H5 30262649
    111947 5vpp:YT (3.9) BS03 MG ? GO:0003735 ... P60490 30262649
    111948 5vpp:YT (3.9) BS04 MG ? GO:0003735 ... P60490 30262649
    111949 5vpp:YY (3.9) BS02 MG ? GO:0003723 ... Q5SHP9 30262649
    111950 5vpt:A (2.1) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29691337
    111951 5vpt:A (2.1) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29691337
    111952 5vpu:A (1.5) BS01 MN 5.4.2.12 GO:0003824 ... A0A059ZPG7 N/A
    111953 5vpu:A (1.5) BS02 MN 5.4.2.12 GO:0003824 ... A0A059ZPG7 N/A
    111954 5vpw:B (1.85) BS02 FE2 1.18.6.1 GO:0005524 ... P11347 28692802
    111955 5vpw:B (1.85) BS03 FE2 1.18.6.1 GO:0005524 ... P11347 28692802
    111956 5vpw:D (1.85) BS01 FE2 1.18.6.1 GO:0005524 ... P11347 28692802
    111957 5vpw:D (1.85) BS02 FE2 1.18.6.1 GO:0005524 ... P11347 28692802
    111958 5vpx:A (2.303) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29691337
    111959 5vpx:A (2.303) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29691337
    111960 5vpy:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01116 29199977
    111961 5vpy:B (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01116 29199977
    111962 5vq2:A (1.96) BS02 MG 3.6.5.2 GO:0003924 ... P01116 29199977
    111963 5vq2:B (1.96) BS02 MG 3.6.5.2 GO:0003924 ... P01116 29199977
    111964 5vq3:B (1.72) BS02 FE2 1.18.6.1 GO:0005524 ... P11347 28692802
    111965 5vq3:B (1.72) BS03 FE2 1.18.6.1 GO:0005524 ... P11347 28692802
    111966 5vq3:D (1.72) BS01 FE2 1.18.6.1 GO:0005524 ... P11347 28692802
    111967 5vq3:D (1.72) BS02 FE2 1.18.6.1 GO:0005524 ... P11347 28692802
    111968 5vq4:B (2.3) BS02 FE 1.18.6.1 GO:0005524 ... P07329 28692802
    111969 5vq4:B (2.3) BS03 FE 1.18.6.1 GO:0005524 ... P07329 28692802
    111970 5vq4:D (2.3) BS01 FE 1.18.6.1 GO:0005524 ... P07329 28692802
    111971 5vq4:D (2.3) BS02 FE 1.18.6.1 GO:0005524 ... P07329 28692802
    111972 5vqn:A (2.002) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 29691337
    111973 5vqn:A (2.002) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 29691337
    111974 5vr0:A (1.7) BS01 MN 5.3.1.5 GO:0000287 ... P24300 29488925
    111975 5vr0:A (1.7) BS02 MN 5.3.1.5 GO:0000287 ... P24300 29488925
    111976 5vr0:A (1.7) BS03 CA 5.3.1.5 GO:0000287 ... P24300 29488925
    111977 5vr7:B (2.612) BS01 MG 3.1.3.16 GO:0004722 ... Q9CAJ0 29084945
    111978 5vr7:B (2.612) BS02 MG 3.1.3.16 GO:0004722 ... Q9CAJ0 29084945
    111979 5vrb:A (1.85) BS01 CA 2.2.1.1 GO:0003824 ... B4RKU9 N/A
    111980 5vrb:A (1.85) BS02 CA 2.2.1.1 GO:0003824 ... B4RKU9 N/A
    111981 5vrb:B (1.85) BS01 CA 2.2.1.1 GO:0003824 ... B4RKU9 N/A
    111982 5vrb:B (1.85) BS02 CA 2.2.1.1 GO:0003824 ... B4RKU9 N/A
    111983 5vrb:C (1.85) BS01 CA 2.2.1.1 GO:0003824 ... B4RKU9 N/A
    111984 5vrb:D (1.85) BS01 CA 2.2.1.1 GO:0003824 ... B4RKU9 N/A
    111985 5vrf:A (4.1) BS01 ZN ? GO:0005886 ... Q8E919 29507252
    111986 5vrf:A (4.1) BS02 ZN ? GO:0005886 ... Q8E919 29507252
    111987 5vrf:A (4.1) BS03 ZN ? GO:0005886 ... Q8E919 29507252
    111988 5vrf:A (4.1) BS04 ZN ? GO:0005886 ... Q8E919 29507252
    111989 5vrf:B (4.1) BS01 ZN ? GO:0005886 ... Q8E919 29507252
    111990 5vrf:B (4.1) BS02 ZN ? GO:0005886 ... Q8E919 29507252
    111991 5vrf:B (4.1) BS03 ZN ? GO:0005886 ... Q8E919 29507252
    111992 5vrf:B (4.1) BS04 ZN ? GO:0005886 ... Q8E919 29507252
    111993 5vrh:A (2.137) BS01 MG 2.3.1.269 GO:0005515 ... P23930 28698362
    111994 5vri:A (2.15) BS01 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    111995 5vri:A (2.15) BS02 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    111996 5vri:B (2.15) BS01 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    111997 5vri:B (2.15) BS02 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    111998 5vri:C (2.15) BS01 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    111999 5vri:C (2.15) BS02 FE2 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    112000 5vri:D (2.15) BS01 CO 3.1.8.1 GO:0004063 ... Q97VT7 29196634
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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