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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    111601 5vkw:B (1.998) BS02 MG 4.3.2.2 GO:0003824 ... A0A1D8PT56 N/A
    111602 5vl0:A (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111603 5vl0:A (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111604 5vl0:B (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111605 5vl0:B (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111606 5vl0:C (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111607 5vl0:C (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111608 5vl0:D (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111609 5vl0:D (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111610 5vla:A (2.4) BS02 CA 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    111611 5vlb:A (2.25) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111612 5vlb:B (2.25) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111613 5vlb:C (2.25) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111614 5vlb:D (2.25) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111615 5vlb:E (2.25) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111616 5vlb:F (2.25) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111617 5vlc:A (1.97) BS02 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111618 5vlc:B (1.97) BS02 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111619 5vlc:C (1.97) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111620 5vlc:D (1.97) BS02 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111621 5vlc:E (1.97) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111622 5vlc:F (1.97) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111623 5vld:A (2.59) BS03 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111624 5vld:B (2.59) BS02 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111625 5vld:C (2.59) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111626 5vld:D (2.59) BS02 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111627 5vld:E (2.59) BS01 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111628 5vld:F (2.59) BS02 ZN 1.1.1.23 GO:0000105 ... G7IKX3 28874718
    111629 5vlh:A (2.86) BS03 CA 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    111630 5vlk:A (2.2) BS03 CA 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    111631 5vll:A (2.37) BS03 CA 3.4.21.- GO:0004252 ... Q8NBP7 28825733
    111632 5vm2:A (1.983) BS01 MG 1.-.-.- GO:0008270 ... P77280 N/A
    111633 5vm2:A (1.983) BS02 ZN 1.-.-.- GO:0008270 ... P77280 N/A
    111634 5vm2:B (1.983) BS01 MG 1.-.-.- GO:0008270 ... P77280 N/A
    111635 5vm2:B (1.983) BS02 ZN 1.-.-.- GO:0008270 ... P77280 N/A
    111636 5vma:A (1.95) BS04 CA ? GO:0003824 ... A8FDC4 N/A
    111637 5vma:A (1.95) BS05 CA ? GO:0003824 ... A8FDC4 N/A
    111638 5vmd:A (2.202) BS01 ZN ? GO:0008270 ... Q86XK2 28691247
    111639 5vmd:A (2.202) BS02 ZN ? GO:0008270 ... Q86XK2 28691247
    111640 5vmd:A (2.202) BS03 ZN ? GO:0008270 ... Q86XK2 28691247
    111641 5vmd:A (2.202) BS04 ZN ? GO:0008270 ... Q86XK2 28691247
    111642 5vmd:A (2.202) BS05 ZN ? GO:0008270 ... Q86XK2 28691247
    111643 5vmd:B (2.202) BS01 ZN ? GO:0008270 ... Q86XK2 28691247
    111644 5vmd:B (2.202) BS02 ZN ? GO:0008270 ... Q86XK2 28691247
    111645 5vmd:B (2.202) BS03 ZN ? GO:0008270 ... Q86XK2 28691247
    111646 5vmd:B (2.202) BS04 ZN ? GO:0008270 ... Q86XK2 28691247
    111647 5vmd:B (2.202) BS05 ZN ? GO:0008270 ... Q86XK2 28691247
    111648 5vmd:C (2.202) BS01 ZN ? GO:0008270 ... Q86XK2 28691247
    111649 5vmd:C (2.202) BS02 ZN ? GO:0008270 ... Q86XK2 28691247
    111650 5vmd:C (2.202) BS03 ZN ? GO:0008270 ... Q86XK2 28691247
    111651 5vmd:C (2.202) BS04 ZN ? GO:0008270 ... Q86XK2 28691247
    111652 5vmd:D (2.202) BS01 ZN ? GO:0008270 ... Q86XK2 28691247
    111653 5vmd:D (2.202) BS02 ZN ? GO:0008270 ... Q86XK2 28691247
    111654 5vmd:D (2.202) BS03 ZN ? GO:0008270 ... Q86XK2 28691247
    111655 5vmd:D (2.202) BS04 ZN ? GO:0008270 ... Q86XK2 28691247
    111656 5vmp:A (2.48) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    111657 5vmp:B (2.48) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    111658 5vmp:C (2.48) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    111659 5vmp:D (2.48) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    111660 5vmq:C (2.012) BS01 CA 2.1.3.2 GO:0004070 ... B7MLQ3 28833948
    111661 5vms:B (3.7) BS01 CA ? GO:0000086 ... P0DP23 28575668
    111662 5vms:B (3.7) BS02 CA ? GO:0000086 ... P0DP23 28575668
    111663 5vms:B (3.7) BS03 CA ? GO:0000086 ... P0DP23 28575668
    111664 5vmu:A (2.346) BS03 ZN ? N/A Q86T24 29546986
    111665 5vmu:A (2.346) BS04 ZN ? N/A Q86T24 29546986
    111666 5vmu:A (2.346) BS05 ZN ? N/A Q86T24 29546986
    111667 5vmv:A (2.313) BS03 ZN ? N/A Q86T24 29546986
    111668 5vmv:A (2.313) BS04 ZN ? N/A Q86T24 29546986
    111669 5vmv:A (2.313) BS05 ZN ? N/A Q86T24 29546986
    111670 5vmw:A (2.397) BS03 ZN ? N/A Q86T24 29546986
    111671 5vmw:A (2.397) BS04 ZN ? N/A Q86T24 29546986
    111672 5vmw:A (2.397) BS05 ZN ? N/A Q86T24 29546986
    111673 5vmx:A (2.05) BS03 ZN ? N/A Q86T24 29546986
    111674 5vmx:A (2.05) BS04 ZN ? N/A Q86T24 29546986
    111675 5vmx:A (2.05) BS05 ZN ? N/A Q86T24 29546986
    111676 5vmy:A (2.002) BS03 ZN ? N/A Q86T24 29546986
    111677 5vmy:A (2.002) BS04 ZN ? N/A Q86T24 29546986
    111678 5vmy:A (2.002) BS05 ZN ? N/A Q86T24 29546986
    111679 5vmz:A (2.319) BS03 ZN ? N/A Q86T24 29546986
    111680 5vmz:A (2.319) BS04 ZN ? N/A Q86T24 29546986
    111681 5vmz:A (2.319) BS05 ZN ? N/A Q86T24 29546986
    111682 5vn1:A (1.25) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111683 5vn1:A (1.25) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111684 5vn1:B (1.25) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111685 5vn1:B (1.25) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111686 5vn1:C (1.25) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111687 5vn1:C (1.25) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111688 5vn1:D (1.25) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111689 5vn1:D (1.25) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111690 5vn5:A (1.9) BS01 ZN ? GO:0005737 ... G2IN02 28935670
    111691 5vn5:B (1.9) BS01 ZN ? GO:0005737 ... G2IN02 28935670
    111692 5vn5:C (1.9) BS01 ZN ? GO:0005737 ... G2IN02 28935670
    111693 5vn6:A (2.1) BS01 MG 1.14.11.17 GO:0000908 ... B1YQF4 N/A
    111694 5vn6:B (2.1) BS01 MG 1.14.11.17 GO:0000908 ... B1YQF4 N/A
    111695 5vne:A (2.698) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111696 5vne:B (2.698) BS02 ZN ? GO:0006886 ... O95486 28594326
    111697 5vnf:A (2.407) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111698 5vnf:B (2.407) BS02 ZN ? GO:0006886 ... O95486 28594326
    111699 5vng:A (2.6) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111700 5vng:B (2.6) BS02 ZN ? GO:0006886 ... O95486 28594326
    111701 5vnh:A (2.6) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111702 5vnh:B (2.6) BS02 ZN ? GO:0006886 ... O95486 28594326
    111703 5vni:A (2.788) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111704 5vni:B (2.788) BS02 ZN ? GO:0006886 ... O95486 28594326
    111705 5vnj:A (2.806) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111706 5vnj:B (2.806) BS02 ZN ? GO:0006886 ... O95486 28594326
    111707 5vnk:A (2.55) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111708 5vnk:B (2.55) BS02 ZN ? GO:0006886 ... O95486 28594326
    111709 5vnl:A (2.394) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111710 5vnl:B (2.394) BS01 ZN ? GO:0006886 ... O95486 28594326
    111711 5vnm:A (2.765) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111712 5vnm:B (2.765) BS01 ZN ? GO:0006886 ... O95486 28594326
    111713 5vnn:A (2.501) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111714 5vnn:B (2.501) BS02 ZN ? GO:0006886 ... O95486 28594326
    111715 5vno:A (2.905) BS01 ZN ? GO:0000139 ... Q15436 28594326
    111716 5vno:B (2.905) BS01 ZN ? GO:0006886 ... O95486 28594326
    111717 5vnu:A (1.584) BS02 MN 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 28768416
    111718 5vnz:A (3.41) BS01 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111719 5vnz:A (3.41) BS02 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111720 5vnz:A (3.41) BS03 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111721 5vnz:D (3.41) BS01 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111722 5vnz:D (3.41) BS02 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111723 5vnz:D (3.41) BS03 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111724 5vo0:A (3.9) BS01 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111725 5vo0:A (3.9) BS02 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111726 5vo0:A (3.9) BS03 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111727 5vo0:D (3.9) BS01 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111728 5vo0:D (3.9) BS02 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111729 5vo0:D (3.9) BS03 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111730 5vo0:D (3.9) BS04 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111731 5vo0:D (3.9) BS05 ZN 2.3.2.27 GO:0004842 ... Q6IWL4 29176576
    111732 5vo3:A (1.954) BS03 ZN 3.5.1.18 GO:0005829 ... P44514 29272107
    111733 5vo3:A (1.954) BS04 ZN 3.5.1.18 GO:0005829 ... P44514 29272107
    111734 5vo8:B (3.3) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 28652344
    111735 5vo8:D (3.3) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    111736 5vo8:D (3.3) BS06 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    111737 5vo8:D (3.3) BS07 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    111738 5voe:H (2.0) BS02 CA 3.4.21.6 GO:0004252 ... P00742 29863725
    111739 5vof:H (2.25) BS03 CA 3.4.21.6 GO:0004252 ... P00742 29863725
    111740 5voi:D (2.8) BS02 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    111741 5voi:D (2.8) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    111742 5voi:D (2.8) BS04 MG 2.7.7.6 GO:0000287 ... Q8RQE8 28652344
    111743 5voj:A (1.799) BS02 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26664 28594175
    111744 5vol:A (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    111745 5vol:B (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    111746 5vol:C (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    111747 5vol:D (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    111748 5vol:E (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    111749 5vol:F (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    111750 5vol:G (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    111751 5vol:H (1.98) BS01 CA ? GO:0016747 ... B3CET1 28669823
    111752 5vp0:A (2.2) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28796496
    111753 5vp0:B (2.2) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28796496
    111754 5vp0:C (2.2) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 28796496
    111755 5vp1:A (1.86) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29093293
    111756 5vp1:B (1.86) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29093293
    111757 5vp1:C (1.86) BS01 ZN 3.1.4.17 GO:0004114 ... O00408 29093293
    111758 5vp2:10 (2.8) BS04 MG ? GO:0003735 ... P60493 28505372
    111759 5vp2:10 (2.8) BS05 MG ? GO:0003735 ... P60493 28505372
    111760 5vp2:10 (2.8) BS06 MG ? GO:0003735 ... P60493 28505372
    111761 5vp2:11 (2.8) BS02 MG ? GO:0003735 ... P60494 28505372
    111762 5vp2:12 (2.8) BS02 MG ? GO:0003735 ... Q5SHP6 28505372
    111763 5vp2:13 (2.8) BS03 MG ? GO:0003735 ... Q5SHQ6 28505372
    111764 5vp2:13 (2.8) BS04 MG ? GO:0003735 ... Q5SHQ6 28505372
    111765 5vp2:14 (2.8) BS02 ZN ? GO:0003735 ... Q5SJE1 28505372
    111766 5vp2:15 (2.8) BS02 MG ? GO:0003735 ... P80339 28505372
    111767 5vp2:15 (2.8) BS03 ZN ? GO:0003735 ... P80339 28505372
    111768 5vp2:16 (2.8) BS02 MG ? GO:0000049 ... P35871 28505372
    111769 5vp2:16 (2.8) BS03 ZN ? GO:0000049 ... P35871 28505372
    111770 5vp2:16 (2.8) BS04 MG ? GO:0000049 ... P35871 28505372
    111771 5vp2:17 (2.8) BS02 MG ? GO:0003735 ... P80340 28505372
    111772 5vp2:18 (2.8) BS02 MG ? GO:0003735 ... Q5SKU1 28505372
    111773 5vp2:18 (2.8) BS03 MG ? GO:0003735 ... Q5SKU1 28505372
    111774 5vp2:18 (2.8) BS04 MG ? GO:0003735 ... Q5SKU1 28505372
    111775 5vp2:19 (2.8) BS02 ZN ? GO:0003735 ... Q5SHR2 28505372
    111776 5vp2:1D (2.8) BS03 MG ? GO:0002181 ... P60405 28505372
    111777 5vp2:1D (2.8) BS04 MG ? GO:0002181 ... P60405 28505372
    111778 5vp2:1D (2.8) BS05 MG ? GO:0002181 ... P60405 28505372
    111779 5vp2:1D (2.8) BS06 MG ? GO:0002181 ... P60405 28505372
    111780 5vp2:1D (2.8) BS07 MG ? GO:0002181 ... P60405 28505372
    111781 5vp2:1D (2.8) BS08 MG ? GO:0002181 ... P60405 28505372
    111782 5vp2:1D (2.8) BS09 MG ? GO:0002181 ... P60405 28505372
    111783 5vp2:1D (2.8) BS10 MG ? GO:0002181 ... P60405 28505372
    111784 5vp2:1D (2.8) BS11 MG ? GO:0002181 ... P60405 28505372
    111785 5vp2:1D (2.8) BS12 MG ? GO:0002181 ... P60405 28505372
    111786 5vp2:1E (2.8) BS02 MG ? GO:0003735 ... Q5SHN8 28505372
    111787 5vp2:1E (2.8) BS03 MG ? GO:0003735 ... Q5SHN8 28505372
    111788 5vp2:1E (2.8) BS04 MG ? GO:0003735 ... Q5SHN8 28505372
    111789 5vp2:1F (2.8) BS02 MG ? GO:0003735 ... Q5SHN9 28505372
    111790 5vp2:1F (2.8) BS03 MG ? GO:0003735 ... Q5SHN9 28505372
    111791 5vp2:1F (2.8) BS04 MG ? GO:0003735 ... Q5SHN9 28505372
    111792 5vp2:1F (2.8) BS05 MG ? GO:0003735 ... Q5SHN9 28505372
    111793 5vp2:1F (2.8) BS06 MG ? GO:0003735 ... Q5SHN9 28505372
    111794 5vp2:1F (2.8) BS07 MG ? GO:0003735 ... Q5SHN9 28505372
    111795 5vp2:1F (2.8) BS08 MG ? GO:0003735 ... Q5SHN9 28505372
    111796 5vp2:1F (2.8) BS09 MG ? GO:0003735 ... Q5SHN9 28505372
    111797 5vp2:1F (2.8) BS10 MG ? GO:0003735 ... Q5SHN9 28505372
    111798 5vp2:1G (2.8) BS04 MG ? GO:0000049 ... Q5SHQ0 28505372
    111799 5vp2:1N (2.8) BS02 MG ? GO:0003729 ... P60488 28505372
    111800 5vp2:1N (2.8) BS03 MG ? GO:0003729 ... P60488 28505372

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218