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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    111401 5vcu:A (1.85) BS02 MG ? GO:0003924 ... A0A1Z0YU85 N/A
    111402 5vdc:A (1.6) BS01 ZN ? N/A Q92785 28533407
    111403 5vdc:A (1.6) BS02 ZN ? N/A Q92785 28533407
    111404 5vdc:A (1.6) BS03 ZN ? N/A Q92785 28533407
    111405 5vdc:A (1.6) BS04 ZN ? N/A Q92785 28533407
    111406 5vde:B (1.65) BS01 CU1 ? GO:0005737 ... P38636 28865724
    111407 5vde:D (1.65) BS01 CU1 ? GO:0005737 ... P38636 28865724
    111408 5vdf:A (1.93) BS01 CU1 ? GO:0005737 ... P38636 28865724
    111409 5vdf:C (1.93) BS01 CU1 ? GO:0005737 ... P38636 28865724
    111410 5vdf:E (1.93) BS01 CU1 ? GO:0005737 ... P38636 28865724
    111411 5vdf:G (1.93) BS01 CU1 ? GO:0005737 ... P38636 28865724
    111412 5vdf:H (1.93) BS01 CU1 ? GO:0005737 ... P38636 28865724
    111413 5vdh:B (2.85) BS07 ZN ? GO:0004888 ... O75311 28479061
    111414 5vdh:C (2.85) BS07 ZN ? GO:0004888 ... O75311 28479061
    111415 5vdh:D (2.85) BS07 ZN ? GO:0004888 ... O75311 28479061
    111416 5vdh:E (2.85) BS07 ZN ? GO:0004888 ... O75311 28479061
    111417 5vdi:A (3.1) BS04 ZN ? GO:0004888 ... O75311 28479061
    111418 5vdi:C (3.1) BS06 ZN ? GO:0004888 ... O75311 28479061
    111419 5vdi:E (3.1) BS07 ZN ? GO:0004888 ... O75311 28479061
    111420 5vdo:A (3.218) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111421 5vdo:B (3.218) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111422 5vdp:A (2.3) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111423 5vdp:B (2.3) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111424 5vdq:A (3.246) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111425 5vdq:B (3.246) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111426 5vdr:A (3.042) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111427 5vdr:B (3.042) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111428 5vds:A (2.766) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111429 5vds:B (2.766) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111430 5vdt:A (2.576) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111431 5vdt:B (2.576) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111432 5vdu:A (2.729) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111433 5vdu:B (2.729) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111434 5vdv:A (2.998) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111435 5vdv:B (2.998) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111436 5vdw:A (2.711) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111437 5vdw:B (2.711) BS01 ZN 2.7.7.86 N/A Q8N884 28940468
    111438 5ve3:A (1.793) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    111439 5ve3:B (1.793) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    111440 5ve4:A (2.65) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    111441 5ve4:B (2.65) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    111442 5ve4:C (2.65) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    111443 5ve5:A (2.35) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    111444 5ve5:B (2.35) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    111445 5ve5:C (2.35) BS01 FE '1.13.11.18
    2.8.1.1'
    GO:0006749 ... B2TEQ2 28684420
    111446 5ve9:A (2.795) BS01 CA ? GO:0005509 ... Q9UPN3 28602822
    111447 5ve9:A (2.795) BS02 CA ? GO:0005509 ... Q9UPN3 28602822
    111448 5ve9:B (2.795) BS01 CA ? GO:0005509 ... Q9UPN3 28602822
    111449 5ve9:B (2.795) BS02 CA ? GO:0005509 ... Q9UPN3 28602822
    111450 5ve9:C (2.795) BS01 ZN ? GO:0008017 ... Q9UPN3 28602822
    111451 5vec:A (2.20002) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    111452 5vec:B (2.20002) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    111453 5vej:A (1.301) BS01 CO ? GO:0008270 ... Q93LD7 28673485
    111454 5vej:A (1.301) BS02 CO ? GO:0008270 ... Q93LD7 28673485
    111455 5vem:A (2.6) BS01 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    111456 5vem:A (2.6) BS02 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    111457 5vem:A (2.6) BS03 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    111458 5vem:B (2.6) BS01 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    111459 5vem:B (2.6) BS02 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    111460 5vem:B (2.6) BS03 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    111461 5vem:C (2.6) BS01 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    111462 5vem:C (2.6) BS02 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    111463 5vem:C (2.6) BS03 ZN 3.1.-.- GO:0000210 ... Q9UJA9 28898552
    111464 5ven:A (1.69) BS02 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    111465 5ven:A (1.69) BS03 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    111466 5ven:A (1.69) BS04 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    111467 5ven:B (1.69) BS02 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    111468 5ven:B (1.69) BS03 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    111469 5ven:B (1.69) BS04 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    111470 5veo:A (1.53) BS02 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    111471 5veo:A (1.53) BS03 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    111472 5veo:A (1.53) BS04 ZN 3.1.-.- GO:0000210 ... Q9EQG7 28898552
    111473 5vep:A (2.59) BS01 CA 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    111474 5vep:A (2.59) BS02 CA 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    111475 5veq:A (2.26) BS02 CA 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    111476 5ver:A (2.81) BS02 CA 2.6.1.63
    2.6.1.7
    4.4.1.13
    GO:0005739 ... Q71RI9 29113027
    111477 5vez:A (2.039) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    111478 5vf0:B (-1.00) BS01 ZN 2.3.2.27 GO:0003677 ... Q9NS91 28506460
    111479 5vf4:A (2.81) BS01 CA N/A N/A N/A 30629599
    111480 5vf4:A (2.81) BS02 CA N/A N/A N/A 30629599
    111481 5vf4:B (2.81) BS01 CA N/A N/A N/A 30629599
    111482 5vf4:B (2.81) BS02 CA N/A N/A N/A 30629599
    111483 5vf4:C (2.81) BS01 CA N/A N/A N/A 30629599
    111484 5vf4:C (2.81) BS02 CA N/A N/A N/A 30629599
    111485 5vf4:C (2.81) BS03 CA N/A N/A N/A 30629599
    111486 5vf4:D (2.81) BS01 CA N/A N/A N/A 30629599
    111487 5vf5:A (1.49) BS01 CU ? GO:0046872 ... A0A2R2JFS1 29113027
    111488 5vf9:A (1.82) BS01 MN 1.15.1.1 GO:0000302 ... P04179 28461152
    111489 5vf9:B (1.82) BS01 MN 1.15.1.1 GO:0000302 ... P04179 28461152
    111490 5vfe:A (1.38) BS01 PB ? GO:0016020 ... P46096 30063057
    111491 5vfe:B (1.38) BS01 PB ? GO:0016020 ... P46096 30063057
    111492 5vff:A (1.413) BS01 PB ? GO:0016020 ... P46096 30063057
    111493 5vfg:A (1.82) BS01 PB ? GO:0016020 ... P46096 30063057
    111494 5vfp:c (4.2) BS01 ZN 3.4.19.- GO:0000502 ... O00487 29636472
    111495 5vfq:c (4.2) BS01 ZN 3.4.19.- GO:0000502 ... O00487 29636472
    111496 5vfr:c (4.9) BS01 ZN 3.4.19.- GO:0000502 ... O00487 29636472
    111497 5vfs:c (3.6) BS01 ZN 3.4.19.- GO:0000502 ... O00487 29636472
    111498 5vg0:A (1.1) BS01 CU 3.2.1.14 N/A C7R4I0 28481095
    111499 5vg0:B (1.1) BS01 CU 3.2.1.14 N/A C7R4I0 28481095
    111500 5vg1:A (2.1) BS01 CU 3.2.1.14 N/A C7R4I0 28481095
    111501 5vg1:B (2.1) BS01 CU 3.2.1.14 N/A C7R4I0 28481095
    111502 5vg2:A (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    111503 5vg2:B (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    111504 5vg2:C (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    111505 5vg2:U (2.46) BS01 FE ? GO:0003824 ... T1K8P1 30529144
    111506 5vg3:A (1.451) BS01 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    111507 5vg3:A (1.451) BS02 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    111508 5vg3:B (1.451) BS01 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    111509 5vg3:B (1.451) BS02 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    111510 5vg3:C (1.451) BS01 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    111511 5vg3:C (1.451) BS02 MN 4.1.1.2 GO:0005737 ... O34714 N/A
    111512 5vg7:A (1.95) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    111513 5vg7:B (1.95) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    111514 5vgc:A (2.6) BS01 CA ? GO:0004842 ... B6DZC0 N/A
    111515 5vgc:A (2.6) BS02 CA ? GO:0004842 ... B6DZC0 N/A
    111516 5vgc:A (2.6) BS03 CA ? GO:0004842 ... B6DZC0 N/A
    111517 5vgc:B (2.6) BS01 CA ? GO:0004842 ... B6DZC0 N/A
    111518 5vge:A (2.6) BS02 ZN ? N/A P10321 28649982
    111519 5vge:A (2.6) BS03 ZN ? N/A P10321 28649982
    111520 5vge:A (2.6) BS04 ZN ? N/A P10321 28649982
    111521 5vgi:A (2.07) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    111522 5vgi:B (2.07) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    111523 5vgi:C (2.07) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    111524 5vgi:D (2.07) BS01 ZN 1.14.11.66
    1.14.11.69
    N/A O75164 28835804
    111525 5vgm:A (1.95) BS01 ZN 3.5.2.3 GO:0004151 ... Q9KL24 31207330
    111526 5vgm:A (1.95) BS02 ZN 3.5.2.3 GO:0004151 ... Q9KL24 31207330
    111527 5vgm:B (1.95) BS01 ZN 3.5.2.3 GO:0004151 ... Q9KL24 31207330
    111528 5vgm:B (1.95) BS02 ZN 3.5.2.3 GO:0004151 ... Q9KL24 31207330
    111529 5vgt:A (1.776) BS01 CA ? N/A Q716G8 29279385
    111530 5vgt:A (1.776) BS02 MG ? N/A Q716G8 29279385
    111531 5vgt:B (1.776) BS01 CA ? N/A Q716G8 29279385
    111532 5vgv:A (2.6) BS01 CU 3.4.24.69 GO:0004222 ... P0DPI1 28475321
    111533 5vgy:A (1.39) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 28817930
    111534 5vh2:A (2.84) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    111535 5vh2:A (2.84) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    111536 5vh2:A (2.84) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    111537 5vh2:B (2.84) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    111538 5vh2:B (2.84) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    111539 5vh2:B (2.84) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    111540 5vh2:C (2.84) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    111541 5vh2:C (2.84) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    111542 5vh2:D (2.84) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    111543 5vh2:D (2.84) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    111544 5vh5:A (1.75) BS03 ZN N/A N/A N/A 28421849
    111545 5vhc:D (2.49) BS01 MG 3.6.4.12
    3.6.4.13
    GO:0003676 ... Q05B79 29899445
    111546 5vi5:D (3.196) BS04 ZN 2.7.7.6 GO:0000287 ... A0QS66 28703128
    111547 5vi5:D (3.196) BS05 ZN 2.7.7.6 GO:0000287 ... A0QS66 28703128
    111548 5vi6:A (1.237) BS02 ZN 3.5.1.-
    3.5.1.98
    GO:0000118 ... Q9BY41 28846375
    111549 5vi8:D (2.76) BS01 ZN 2.7.7.6 GO:0000287 ... A0QS66 28703128
    111550 5vi8:D (2.76) BS02 ZN 2.7.7.6 GO:0000287 ... A0QS66 28703128
    111551 5vi8:D (2.76) BS03 MG 2.7.7.6 GO:0000287 ... A0QS66 28703128
    111552 5vin:A (2.60004) BS01 CO 5.4.2.2 GO:0000287 ... P36871 30122451
    111553 5vin:B (2.60004) BS01 CO 5.4.2.2 GO:0000287 ... P36871 30122451
    111554 5vj5:A (1.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111555 5vj5:A (1.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111556 5vj5:B (1.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111557 5vj5:B (1.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111558 5vjd:A (1.701) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 29593097
    111559 5vjd:B (1.701) BS01 ZN 4.1.2.13 GO:0004332 ... P0AB71 29593097
    111560 5vjf:A (1.85) BS01 ZN 4.1.2.13 GO:0004332 ... P56109 29593097
    111561 5vjf:A (1.85) BS02 CA 4.1.2.13 GO:0004332 ... P56109 29593097
    111562 5vjf:B (1.85) BS01 ZN 4.1.2.13 GO:0004332 ... P56109 29593097
    111563 5vjf:B (1.85) BS02 CA 4.1.2.13 GO:0004332 ... P56109 29593097
    111564 5vjg:A (1.9) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111565 5vjg:A (1.9) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111566 5vjj:A (2.52) BS01 ZN ? N/A B2ZCS6 28817232
    111567 5vjj:A (2.52) BS02 ZN ? N/A B2ZCS6 28817232
    111568 5vjj:A (2.52) BS03 ZN ? N/A B2ZCS6 28817232
    111569 5vjj:B (2.52) BS01 ZN ? N/A B2ZCS6 28817232
    111570 5vjj:B (2.52) BS02 ZN ? N/A B2ZCS6 28817232
    111571 5vjj:B (2.52) BS03 ZN ? N/A B2ZCS6 28817232
    111572 5vjs:A (2.0) BS03 ZN N/A N/A N/A 35999239
    111573 5vjs:A (2.0) BS04 ZN N/A N/A N/A 35999239
    111574 5vjt:A (1.45) BS01 ZN N/A N/A N/A 35999239
    111575 5vjt:A (1.45) BS02 ZN N/A N/A N/A 35999239
    111576 5vjv:A (1.95) BS02 ZN 3.1.3.48 GO:0004721 ... Q9SR62 29615518
    111577 5vjv:A (1.95) BS03 ZN 3.1.3.48 GO:0004721 ... Q9SR62 29615518
    111578 5vjw:A (1.8) BS01 ZN 3.1.3.48 GO:0004721 ... Q9SR62 29615518
    111579 5vjw:A (1.8) BS02 ZN 3.1.3.48 GO:0004721 ... Q9SR62 29615518
    111580 5vk3:B (2.114) BS01 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    111581 5vk3:B (2.114) BS02 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    111582 5vk3:B (2.114) BS03 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    111583 5vk3:B (2.114) BS04 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    111584 5vk3:B (2.114) BS05 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    111585 5vk3:B (2.114) BS06 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    111586 5vk3:B (2.114) BS07 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    111587 5vk3:B (2.114) BS08 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    28607149
    111588 5vk4:A (2.65) BS02 MG 6.3.3.1 GO:0004637 ... Q5F973 N/A
    111589 5vk4:B (2.65) BS02 MG 6.3.3.1 GO:0004637 ... Q5F973 N/A
    111590 5vka:A (1.169) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    111591 5vkb:A (1.139) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    111592 5vkc:A (2.31) BS02 ZN ? GO:0042981 ... Q07820 25679114
    111593 5vkc:B (2.31) BS02 ZN ? GO:0042981 ... Q07820 25679114
    111594 5vkr:A (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111595 5vkr:A (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28640600
    111596 5vkt:A (1.827) BS01 ZN 1.1.1.195 GO:0000166 ... C5XC49 28606901
    111597 5vkt:A (1.827) BS02 ZN 1.1.1.195 GO:0000166 ... C5XC49 28606901
    111598 5vkt:B (1.827) BS01 ZN 1.1.1.195 GO:0000166 ... C5XC49 28606901
    111599 5vkt:B (1.827) BS02 ZN 1.1.1.195 GO:0000166 ... C5XC49 28606901
    111600 5vkw:B (1.998) BS01 CA 4.3.2.2 GO:0003824 ... A0A1D8PT56 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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