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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    111201 5v5x:C (3.5) BS08 CA ? GO:0005509 ... Q91XX3 29087338
    111202 5v5x:C (3.5) BS09 CA ? GO:0005509 ... Q91XX3 29087338
    111203 5v5x:D (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    111204 5v5x:D (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    111205 5v5x:D (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    111206 5v5x:D (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    111207 5v5x:D (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    111208 5v5x:D (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    111209 5v5x:D (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338
    111210 5v5x:D (3.5) BS08 CA ? GO:0005509 ... Q91XX3 29087338
    111211 5v5x:D (3.5) BS09 CA ? GO:0005509 ... Q91XX3 29087338
    111212 5v60:A (2.18) BS02 MG 2.7.11.24 GO:0000165 ... P28482 28740606
    111213 5v69:A (2.55) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0006508 ... K0BWD0 28542609
    111214 5v6a:A (2.7) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0006508 ... K0BWD0 28542609
    111215 5v6m:H (1.9) BS02 CA N/A N/A N/A 29343576
    111216 5v6m:L (1.9) BS02 CA N/A N/A N/A 29343576
    111217 5v6v:B (1.72) BS02 CA 3.6.5.2 GO:0003924 ... P01116 28621541
    111218 5v6x:A (2.76) BS03 ZN 6.1.1.26 GO:0004812 ... Q8PWY1 29035363
    111219 5v6x:B (2.76) BS03 ZN 6.1.1.26 GO:0004812 ... Q8PWY1 29035363
    111220 5v7y:A (2.05) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 28981257
    111221 5v7y:B (2.05) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 28981257
    111222 5v7y:C (2.05) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 28981257
    111223 5v7y:D (2.05) BS01 CO ? GO:0003674 ... A0A4Y1WAP5 28981257
    111224 5v8c:A (2.51) BS01 CO N/A N/A N/A 30782654
    111225 5v8i:10 (3.25) BS03 MG ? GO:0003735 ... Q72HR3 N/A
    111226 5v8i:11 (3.25) BS02 MG ? GO:0003735 ... Q72G84 N/A
    111227 5v8i:14 (3.25) BS02 ZN ? GO:0003735 ... Q72JR0 N/A
    111228 5v8i:15 (3.25) BS02 ZN ? GO:0003735 ... P62652 N/A
    111229 5v8i:16 (3.25) BS02 ZN ? GO:0003735 ... Q72GW3 N/A
    111230 5v8i:17 (3.25) BS02 MG ? GO:0003735 ... P80340 N/A
    111231 5v8i:17 (3.25) BS03 MG ? GO:0003735 ... P80340 N/A
    111232 5v8i:19 (3.25) BS02 ZN ? GO:0003735 ... Q72I28 N/A
    111233 5v8i:1D (3.25) BS03 MG ? GO:0002181 ... Q72I07 N/A
    111234 5v8i:1D (3.25) BS04 MG ? GO:0002181 ... Q72I07 N/A
    111235 5v8i:1D (3.25) BS05 MG ? GO:0002181 ... Q72I07 N/A
    111236 5v8i:1D (3.25) BS06 MG ? GO:0002181 ... Q72I07 N/A
    111237 5v8i:1E (3.25) BS02 MG ? GO:0003735 ... Q72I04 N/A
    111238 5v8i:1E (3.25) BS03 MG ? GO:0003735 ... Q72I04 N/A
    111239 5v8i:1F (3.25) BS02 MG ? GO:0003735 ... Q72I05 N/A
    111240 5v8i:1F (3.25) BS03 MG ? GO:0003735 ... Q72I05 N/A
    111241 5v8i:1F (3.25) BS04 MG ? GO:0003735 ... Q72I05 N/A
    111242 5v8i:1F (3.25) BS05 MG ? GO:0003735 ... Q72I05 N/A
    111243 5v8i:1F (3.25) BS06 MG ? GO:0003735 ... Q72I05 N/A
    111244 5v8i:1F (3.25) BS07 MG ? GO:0003735 ... Q72I05 N/A
    111245 5v8i:1G (3.25) BS03 MG ? GO:0000049 ... Q72I16 N/A
    111246 5v8i:1G (3.25) BS04 MG ? GO:0000049 ... Q72I16 N/A
    111247 5v8i:1G (3.25) BS05 MG ? GO:0000049 ... Q72I16 N/A
    111248 5v8i:1N (3.25) BS02 MG ? GO:0003729 ... Q72IN1 N/A
    111249 5v8i:1N (3.25) BS03 MG ? GO:0003729 ... Q72IN1 N/A
    111250 5v8i:1Q (3.25) BS03 MG ? GO:0000049 ... Q72I11 N/A
    111251 5v8i:1Q (3.25) BS04 MG ? GO:0000049 ... Q72I11 N/A
    111252 5v8i:1R (3.25) BS02 MG ? GO:0003735 ... Q72I33 N/A
    111253 5v8i:1R (3.25) BS03 MG ? GO:0003735 ... Q72I33 N/A
    111254 5v8i:1R (3.25) BS04 MG ? GO:0003735 ... Q72I33 N/A
    111255 5v8i:1U (3.25) BS02 MG ? GO:0000027 ... Q72L76 N/A
    111256 5v8i:1U (3.25) BS03 MG ? GO:0000027 ... Q72L76 N/A
    111257 5v8i:1V (3.25) BS02 MG ? GO:0003723 ... Q72HR2 N/A
    111258 5v8i:1V (3.25) BS03 MG ? GO:0003723 ... Q72HR2 N/A
    111259 5v8i:1V (3.25) BS04 MG ? GO:0003723 ... Q72HR2 N/A
    111260 5v8i:1W (3.25) BS02 MG ? GO:0003735 ... Q72I09 N/A
    111261 5v8i:1Y (3.25) BS02 ZN ? GO:0003723 ... Q72I15 N/A
    111262 5v8i:1b (3.25) BS02 MG ? GO:0003735 ... P62662 N/A
    111263 5v8i:1e (3.25) BS02 MG ? GO:0003723 ... P62665 N/A
    111264 5v8i:1k (3.25) BS02 MG ? GO:0003735 ... P62654 N/A
    111265 5v8i:1l (3.25) BS02 MG ? GO:0000049 ... H7GHW0 N/A
    111266 5v8i:1m (3.25) BS02 MG ? GO:0000049 ... P62655 N/A
    111267 5v8i:1n (3.25) BS02 ZN ? GO:0003735 ... P62656 N/A
    111268 5v8i:1y (3.25) BS02 MG ? GO:0005515 ... P0AD49 N/A
    111269 5v8i:1y (3.25) BS03 MG ? GO:0005515 ... P0AD49 N/A
    111270 5v8i:23 (3.25) BS03 MG ? GO:0003735 ... Q72I22 N/A
    111271 5v8i:24 (3.25) BS02 ZN ? GO:0003735 ... Q72JR0 N/A
    111272 5v8i:25 (3.25) BS02 MG ? GO:0003735 ... P62652 N/A
    111273 5v8i:25 (3.25) BS03 ZN ? GO:0003735 ... P62652 N/A
    111274 5v8i:26 (3.25) BS02 ZN ? GO:0003735 ... Q72GW3 N/A
    111275 5v8i:29 (3.25) BS02 ZN ? GO:0003735 ... Q72I28 N/A
    111276 5v8i:2D (3.25) BS03 MG ? GO:0002181 ... Q72I07 N/A
    111277 5v8i:2D (3.25) BS04 MG ? GO:0002181 ... Q72I07 N/A
    111278 5v8i:2D (3.25) BS05 MG ? GO:0002181 ... Q72I07 N/A
    111279 5v8i:2D (3.25) BS06 MG ? GO:0002181 ... Q72I07 N/A
    111280 5v8i:2E (3.25) BS02 MG ? GO:0003735 ... Q72I04 N/A
    111281 5v8i:2F (3.25) BS02 MG ? GO:0003735 ... Q72I05 N/A
    111282 5v8i:2G (3.25) BS03 MG ? GO:0000049 ... Q72I16 N/A
    111283 5v8i:2G (3.25) BS04 MG ? GO:0000049 ... Q72I16 N/A
    111284 5v8i:2R (3.25) BS02 MG ? GO:0003735 ... Q72I33 N/A
    111285 5v8i:2V (3.25) BS02 MG ? GO:0003723 ... Q72HR2 N/A
    111286 5v8i:2V (3.25) BS03 MG ? GO:0003723 ... Q72HR2 N/A
    111287 5v8i:2W (3.25) BS02 MG ? GO:0003735 ... Q72I09 N/A
    111288 5v8i:2Y (3.25) BS02 ZN ? GO:0003723 ... Q72I15 N/A
    111289 5v8i:2f (3.25) BS02 MG ? GO:0003735 ... P62666 N/A
    111290 5v8i:2n (3.25) BS02 ZN ? GO:0003735 ... P62656 N/A
    111291 5v8i:2t (3.25) BS02 MG ? GO:0003723 ... P62661 N/A
    111292 5v8k:A (2.2) BS31 CA ? GO:0009579 ... Q1MX24 28751471
    111293 5v8k:A (2.2) BS32 CA ? GO:0009579 ... Q1MX24 28751471
    111294 5v8o:A (3.1) BS01 ZN 2.7.7.86 N/A Q8N884 28934246
    111295 5v8o:B (3.1) BS01 ZN 2.7.7.86 N/A Q8N884 28934246
    111296 5v8p:A (2.501) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 28698055
    111297 5v8p:B (2.501) BS02 ZN 3.4.24.69 GO:0004222 ... P0DPI1 28698055
    111298 5v8r:A (1.9) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 28698055
    111299 5v8r:B (1.9) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 28698055
    111300 5v8t:A (2.1) BS02 MG 5.2.1.8 GO:0003755 ... Q12306
    Q63J95
    N/A
    111301 5v8t:B (2.1) BS02 MG 5.2.1.8 GO:0003755 ... Q12306
    Q63J95
    N/A
    111302 5v8u:A (2.05) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 28698055
    111303 5v8u:B (2.05) BS01 ZN 3.4.24.69 GO:0004222 ... P0DPI1 28698055
    111304 5v8x:A (2.95) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    111305 5v8x:B (2.95) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    111306 5v8x:C (2.95) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    111307 5v8x:D (2.95) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    111308 5v91:A (1.3) BS01 ZN ? GO:0046872 ... A0A0E1CQ35 28874374
    111309 5v91:B (1.3) BS01 ZN ? GO:0046872 ... A0A0E1CQ35 28874374
    111310 5v95:A (2.3) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 28345895
    111311 5v97:A (1.8) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 28345895
    111312 5v9f:A (2.05) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 28345895
    111313 5v9g:A (1.95) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 28345895
    111314 5v9h:A (2.15) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 28345895
    111315 5v9h:A (2.15) BS02 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 28345895
    111316 5v9h:B (2.15) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P07379 28345895
    111317 5v9i:A (1.74) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111318 5v9i:A (1.74) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111319 5v9i:A (1.74) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111320 5v9i:A (1.74) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111321 5v9i:B (1.74) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111322 5v9i:B (1.74) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111323 5v9i:B (1.74) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111324 5v9i:B (1.74) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111325 5v9i:C (1.74) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111326 5v9i:C (1.74) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111327 5v9i:C (1.74) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111328 5v9i:C (1.74) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111329 5v9i:D (1.74) BS01 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111330 5v9i:D (1.74) BS02 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111331 5v9i:D (1.74) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111332 5v9i:D (1.74) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q96KQ7 N/A
    111333 5v9j:A (1.74) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    111334 5v9j:A (1.74) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    111335 5v9j:A (1.74) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    111336 5v9j:A (1.74) BS06 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    111337 5v9j:B (1.74) BS03 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    111338 5v9j:B (1.74) BS04 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    111339 5v9j:B (1.74) BS05 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    111340 5v9j:B (1.74) BS06 ZN 2.1.1.-
    2.1.1.367
    GO:0002039 ... Q9H9B1 N/A
    111341 5v9p:A (3.0) BS01 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    111342 5v9p:A (3.0) BS02 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    111343 5v9t:A (3.05) BS01 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    111344 5v9t:A (3.05) BS02 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    111345 5v9t:B (3.05) BS02 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    111346 5v9t:B (3.05) BS03 ZN 1.14.11.67 GO:0003677 ... P29375 28512031
    111347 5va0:A (2.295) BS03 ZN ? GO:0003700 ... P04150 28591827
    111348 5va0:A (2.295) BS04 ZN ? GO:0003700 ... P04150 28591827
    111349 5va0:B (2.295) BS02 ZN ? GO:0003700 ... P04150 28591827
    111350 5va0:B (2.295) BS03 ZN ? GO:0003700 ... P04150 28591827
    111351 5va4:A (2.306) BS01 ZN 5.2.1.8
    6.1.1.11
    GO:0008270 ... P34945
    Q68KK2
    29187540
    111352 5va4:A (2.306) BS02 ZN 5.2.1.8
    6.1.1.11
    GO:0008270 ... P34945
    Q68KK2
    29187540
    111353 5va4:A (2.306) BS03 ZN 5.2.1.8
    6.1.1.11
    GO:0008270 ... P34945
    Q68KK2
    29187540
    111354 5va7:A (2.153) BS03 ZN ? GO:0003700 ... P04150 28591827
    111355 5va7:A (2.153) BS04 ZN ? GO:0003700 ... P04150 28591827
    111356 5va7:B (2.153) BS02 ZN ? GO:0003700 ... P04150 28591827
    111357 5va7:B (2.153) BS03 ZN ? GO:0003700 ... P04150 28591827
    111358 5va9:A (2.55) BS02 CA 3.2.1.1 GO:0003824 ... P04746 31241898
    111359 5va9:B (2.55) BS02 CA 3.2.1.1 GO:0003824 ... P04746 31241898
    111360 5vab:A (1.702) BS02 ZN ? N/A I1N521 28383693
    111361 5vab:A (1.702) BS03 ZN ? N/A I1N521 28383693
    111362 5vad:A (2.36) BS03 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 28501621
    111363 5vad:B (2.36) BS03 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 28501621
    111364 5vaj:A (1.95) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    111365 5vaj:A (1.95) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    111366 5vaj:B (1.95) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    111367 5vaj:B (1.95) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 28854734
    111368 5vao:D (2.56) BS03 CA ? GO:0003723 ... Q77DJ5 28593988
    111369 5vb0:A (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    111370 5vb0:B (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    111371 5vb0:C (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    111372 5vb0:D (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    111373 5vb0:E (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    111374 5vb0:F (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    111375 5vb0:G (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    111376 5vb0:H (2.689) BS01 MN ? GO:0016740 ... D7UQM0 28874374
    111377 5vbi:A (1.75) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    111378 5vbi:B (1.75) BS01 MG 5.4.2.2 GO:0000287 ... P36871 30122451
    111379 5vbl:B (2.6) BS02 ZN ? GO:0004930 ... P00268
    P35414
    28528775
    111380 5vbn:B (2.35) BS01 ZN 2.7.7.7
    3.1.11.-
    GO:0003677 ... Q07864 28747437
    111381 5vbn:B (2.35) BS02 ZN 2.7.7.7
    3.1.11.-
    GO:0003677 ... Q07864 28747437
    111382 5vbn:F (2.35) BS01 ZN 2.7.7.7
    3.1.11.-
    GO:0003677 ... Q07864 28747437
    111383 5vbn:F (2.35) BS02 ZN 2.7.7.7
    3.1.11.-
    GO:0003677 ... Q07864 28747437
    111384 5vbz:A (2.2) BS02 MG 3.6.5.2 GO:0003924 ... P01112 29033317
    111385 5vbz:C (2.2) BS03 MG 3.6.5.2 GO:0003924 ... P01112 29033317
    111386 5vc1:A (1.94) BS01 CA ? N/A P14151 28489325
    111387 5vc9:C (2.1) BS02 ZN ? GO:0003677 ... Q9H2H0 29276034
    111388 5vc9:C (2.1) BS03 ZN ? GO:0003677 ... Q9H2H0 29276034
    111389 5vc9:F (2.1) BS03 ZN ? GO:0003677 ... Q9H2H0 29276034
    111390 5vc9:F (2.1) BS04 ZN ? GO:0003677 ... Q9H2H0 29276034
    111391 5vcm:A (1.599) BS01 MN 2.4.1.143 GO:0000139 ... Q10469 29666272
    111392 5vcm:B (1.599) BS01 MN 2.4.1.143 GO:0000139 ... Q10469 29666272
    111393 5vcn:A (3.0) BS01 CA 3.4.22.65 GO:0006508 ... P08176 26026055
    111394 5vcn:B (3.0) BS01 CA 3.4.22.65 GO:0006508 ... P08176 26026055
    111395 5vco:E (2.74) BS01 CA 3.4.22.65 GO:0006508 ... P08176 26026055
    111396 5vco:F (2.74) BS01 CA 3.4.22.65 GO:0006508 ... P08176 26026055
    111397 5vcp:A (1.95) BS01 FE2 3.5.1.88 GO:0006412 ... Q13XB1 N/A
    111398 5vcp:B (1.95) BS01 FE2 3.5.1.88 GO:0006412 ... Q13XB1 N/A
    111399 5vcp:C (1.95) BS01 FE2 3.5.1.88 GO:0006412 ... Q13XB1 N/A
    111400 5vcp:D (1.95) BS01 FE2 3.5.1.88 GO:0006412 ... Q13XB1 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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