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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    111001 5uy8:D (2.39) BS06 MG 2.1.2.3
    3.5.4.10
    GO:0003360 ... P31939 29072452
    111002 5uya:A (1.719) BS01 ZN ? GO:0007155 ... Q56952 28695856
    111003 5uyb:A (1.95) BS01 FE ? GO:0007155 ... Q56952 28695856
    111004 5uyc:A (1.959) BS01 MN ? GO:0007155 ... Q56952 28695856
    111005 5uyd:A (1.927) BS01 ZN ? GO:0007155 ... Q56952 28695856
    111006 5uye:A (2.088) BS01 FE ? GO:0007155 ... Q56952 28695856
    111007 5uyf:A (2.057) BS01 MN ? GO:0007155 ... Q56952 28695856
    111008 5uyg:A (1.859) BS01 ZN ? GO:0007155 ... Q56952 28695856
    111009 5uyh:A (1.99) BS01 MN ? GO:0007155 ... Q56952 28695856
    111010 5uym:29 (3.2) BS02 ZN ? GO:0002181 ... P0A7M9 28538735
    111011 5uym:Z (3.2) BS05 MG ? GO:0003723 ... P0CE47 28538735
    111012 5uyq:Z (3.8) BS05 MG ? GO:0003723 ... P0CE47 28538735
    111013 5uyv:A (1.691) BS01 ZN ? GO:0007155 ... Q56952 28695856
    111014 5uyw:A (1.954) BS01 ZN ? GO:0007155 ... Q56952 28695856
    111015 5uz0:A (1.79) BS03 MG 2.1.2.3
    3.5.4.10
    GO:0003360 ... P31939 29072452
    111016 5uz0:B (1.79) BS05 MG 2.1.2.3
    3.5.4.10
    GO:0003360 ... P31939 29072452
    111017 5uz0:C (1.79) BS03 MG 2.1.2.3
    3.5.4.10
    GO:0003360 ... P31939 29072452
    111018 5uz0:D (1.79) BS06 MG 2.1.2.3
    3.5.4.10
    GO:0003360 ... P31939 29072452
    111019 5uz8:A (1.85) BS01 CA ? GO:0005509 ... Q99PF4 30033219
    111020 5uz8:A (1.85) BS02 CA ? GO:0005509 ... Q99PF4 30033219
    111021 5uz8:A (1.85) BS03 CA ? GO:0005509 ... Q99PF4 30033219
    111022 5uz8:A (1.85) BS04 CA ? GO:0005509 ... Q99PF4 30033219
    111023 5uz8:A (1.85) BS05 CA ? GO:0005509 ... Q99PF4 30033219
    111024 5uz8:A (1.85) BS06 CA ? GO:0005509 ... Q99PF4 30033219
    111025 5uz8:A (1.85) BS07 CA ? GO:0005509 ... Q99PF4 30033219
    111026 5uzs:B (2.367) BS03 MG 1.1.1.205 GO:0003824 ... A0A0H2YRZ7 N/A
    111027 5uzu:A (2.403) BS01 CA 1.11.2.2 GO:0004601 ... P05164 28808028
    111028 5uzw:A (2.82) BS03 CA 3.4.21.-
    3.4.21.26
    GO:0004252 ... R4P353 28584123
    111029 5uzw:B (2.82) BS03 CA 3.4.21.-
    3.4.21.26
    GO:0004252 ... R4P353 28584123
    111030 5uzw:B (2.82) BS04 CA 3.4.21.-
    3.4.21.26
    GO:0004252 ... R4P353 28584123
    111031 5v02:R (1.78) BS02 CA ? GO:0000086 ... P0DP23 29576321
    111032 5v02:R (1.78) BS03 CA ? GO:0000086 ... P0DP23 29576321
    111033 5v03:R (1.58) BS02 CA ? GO:0000086 ... P0DP23 29576321
    111034 5v03:R (1.58) BS03 CA ? GO:0000086 ... P0DP23 29576321
    111035 5v05:Z (2.902) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111036 5v06:Z (2.75) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111037 5v07:Z (2.15) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111038 5v07:Z (2.15) BS04 MN 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111039 5v08:Z (2.812) BS03 MG 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111040 5v09:Z (2.75) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111041 5v0a:Z (2.38) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111042 5v0a:Z (2.38) BS04 MN 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111043 5v0a:Z (2.38) BS05 MN 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111044 5v0b:Z (2.63) BS03 MN 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111045 5v0d:Z (2.63) BS04 MG 3.1.-.- GO:0003677 ... Q9UQ84 28533382
    111046 5v0f:A (2.23) BS02 FE ? N/A D1A230 N/A
    111047 5v0q:A (2.4) BS03 CA N/A GO:0004519 ... N/A 28873986
    111048 5v0q:A (2.4) BS04 CA N/A GO:0004519 ... N/A 28873986
    111049 5v18:A (2.15) BS02 FE2 1.14.11.29 GO:0005506 ... Q9GZT9 28594552
    111050 5v1b:A (2.49) BS01 FE 1.14.11.-
    1.14.11.29
    GO:0005506 ... Q96KS0 28594552
    111051 5v1f:A (2.181) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    111052 5v1f:A (2.181) BS05 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    111053 5v1i:A (2.035) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    111054 5v1n:A (2.005) BS04 CA 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    111055 5v1o:A (1.801) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    111056 5v1p:A (1.991) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    111057 5v1p:A (1.991) BS06 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    111058 5v1r:A (2.077) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    111059 5v1r:A (2.077) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 28449123
    111060 5v1u:A (2.052) BS02 ZN ? GO:0046872 ... D1CIZ5 31719203
    111061 5v1u:A (2.052) BS03 ZN ? GO:0046872 ... D1CIZ5 31719203
    111062 5v1u:B (2.052) BS02 ZN ? GO:0046872 ... D1CIZ5 31719203
    111063 5v1u:B (2.052) BS03 ZN ? GO:0046872 ... D1CIZ5 31719203
    111064 5v1u:B (2.052) BS04 ZN ? GO:0046872 ... D1CIZ5 31719203
    111065 5v1u:C (2.052) BS02 ZN ? GO:0046872 ... D1CIZ5 31719203
    111066 5v1u:C (2.052) BS03 ZN ? GO:0046872 ... D1CIZ5 31719203
    111067 5v1u:C (2.052) BS04 ZN ? GO:0046872 ... D1CIZ5 31719203
    111068 5v1u:D (2.052) BS02 ZN ? GO:0046872 ... D1CIZ5 31719203
    111069 5v1v:A (1.35) BS02 ZN ? GO:0046872 ... D1CIZ5 31719203
    111070 5v1v:A (1.35) BS03 ZN ? GO:0046872 ... D1CIZ5 31719203
    111071 5v1v:A (1.35) BS04 ZN ? GO:0046872 ... D1CIZ5 31719203
    111072 5v1v:B (1.35) BS02 ZN ? GO:0046872 ... D1CIZ5 31719203
    111073 5v1v:B (1.35) BS03 ZN ? GO:0046872 ... D1CIZ5 31719203
    111074 5v21:A (2.415) BS02 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 28256625
    111075 5v21:A (2.415) BS03 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 28256625
    111076 5v21:A (2.415) BS04 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 28256625
    111077 5v22:A (2.4) BS02 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 28256625
    111078 5v22:A (2.4) BS03 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 28256625
    111079 5v22:A (2.4) BS04 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 28256625
    111080 5v26:A (1.79) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    111081 5v26:A (1.79) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    111082 5v26:B (1.79) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    111083 5v26:B (1.79) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    111084 5v27:A (2.352) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    111085 5v27:A (2.352) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    111086 5v28:A (2.724) BS01 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    111087 5v28:A (2.724) BS02 FE2 1.13.11.6 GO:0000334 ... Q1LCS4 N/A
    111088 5v2c:A (1.9) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28741056
    111089 5v2c:D (1.9) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    111090 5v2c:J (1.9) BS01 MG ? GO:0009523 ... Q7DGD4 28741056
    111091 5v2c:O (1.9) BS01 CA ? GO:0009523 ... D0VWR2 28741056
    111092 5v2c:a (1.9) BS02 FE2 1.10.3.9 GO:0005506 ... P51765 28741056
    111093 5v2c:c (1.9) BS15 CA ? GO:0005737 ... D0VWR7 28741056
    111094 5v2c:d (1.9) BS01 FE2 1.10.3.9 GO:0009523 ... D0VWR8 28741056
    111095 5v2c:j (1.9) BS01 MG ? GO:0009523 ... Q7DGD4 28741056
    111096 5v2c:o (1.9) BS01 CA ? GO:0009523 ... D0VWR2 28741056
    111097 5v2d:A (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    111098 5v2d:B (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    111099 5v2d:C (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    111100 5v2d:D (1.9) BS01 FE N/A GO:0016702 ... N/A 30115012
    111101 5v2t:A (1.227) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    111102 5v2w:A (2.3) BS01 ZN 4.4.1.21 GO:0005506 ... Q8Z4D7 N/A
    111103 5v2w:B (2.3) BS01 ZN 4.4.1.21 GO:0005506 ... Q8Z4D7 N/A
    111104 5v2x:A (1.847) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    111105 5v2x:B (1.847) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    111106 5v2y:A (1.428) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    111107 5v2z:A (1.23) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    111108 5v31:A (2.45) BS02 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    111109 5v32:A (1.486) BS01 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    111110 5v33:L (3.487) BS05 FE ? GO:0009772 ... P0C0Y8 28469762
    111111 5v33:M (3.487) BS03 FE ? GO:0009772 ... P0C0Y9 28469762
    111112 5v34:A (1.48) BS02 MN 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 28780854
    111113 5v37:A (1.42) BS01 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 29856759
    111114 5v37:A (1.42) BS02 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 29856759
    111115 5v37:A (1.42) BS03 ZN 2.1.1.354 GO:0000978 ... Q9H7B4 29856759
    111116 5v3c:A (1.419) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 31808981
    111117 5v3d:A (1.539) BS01 MN ? GO:0046872 ... A0A0E1CQ35 28874374
    111118 5v3d:B (1.539) BS02 MN ? GO:0046872 ... A0A0E1CQ35 28874374
    111119 5v3g:A (2.416) BS04 ZN 2.1.1.43 N/A D9IWL3 28801461
    111120 5v3g:A (2.416) BS05 ZN 2.1.1.43 N/A D9IWL3 28801461
    111121 5v3g:A (2.416) BS06 ZN 2.1.1.43 N/A D9IWL3 28801461
    111122 5v3g:A (2.416) BS07 ZN 2.1.1.43 N/A D9IWL3 28801461
    111123 5v3g:A (2.416) BS08 ZN 2.1.1.43 N/A D9IWL3 28801461
    111124 5v3g:A (2.416) BS09 ZN 2.1.1.43 N/A D9IWL3 28801461
    111125 5v3g:D (2.416) BS04 ZN 2.1.1.43 N/A D9IWL3 28801461
    111126 5v3g:D (2.416) BS05 ZN 2.1.1.43 N/A D9IWL3 28801461
    111127 5v3g:D (2.416) BS06 ZN 2.1.1.43 N/A D9IWL3 28801461
    111128 5v3g:D (2.416) BS07 ZN 2.1.1.43 N/A D9IWL3 28801461
    111129 5v3g:D (2.416) BS08 ZN 2.1.1.43 N/A D9IWL3 28801461
    111130 5v3g:D (2.416) BS09 ZN 2.1.1.43 N/A D9IWL3 28801461
    111131 5v3h:A (2.69) BS02 ZN 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 29856759
    111132 5v3h:A (2.69) BS03 ZN 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 29856759
    111133 5v3h:A (2.69) BS04 ZN 2.1.1.-
    2.1.1.354
    GO:0000122 ... Q9NRG4 29856759
    111134 5v3j:E (2.064) BS03 ZN ? N/A E9PYI1 29551271
    111135 5v3j:E (2.064) BS04 ZN ? N/A E9PYI1 29551271
    111136 5v3j:E (2.064) BS05 ZN ? N/A E9PYI1 29551271
    111137 5v3j:E (2.064) BS06 ZN ? N/A E9PYI1 29551271
    111138 5v3j:E (2.064) BS07 ZN ? N/A E9PYI1 29551271
    111139 5v3j:E (2.064) BS08 ZN ? N/A E9PYI1 29551271
    111140 5v3j:E (2.064) BS09 ZN ? N/A E9PYI1 29551271
    111141 5v3j:E (2.064) BS10 ZN ? N/A E9PYI1 29551271
    111142 5v3j:E (2.064) BS11 ZN ? N/A E9PYI1 29551271
    111143 5v3j:E (2.064) BS12 ZN ? N/A E9PYI1 29551271
    111144 5v3j:E (2.064) BS13 MG ? N/A E9PYI1 29551271
    111145 5v3j:F (2.064) BS03 ZN ? N/A E9PYI1 29551271
    111146 5v3j:F (2.064) BS04 ZN ? N/A E9PYI1 29551271
    111147 5v3j:F (2.064) BS05 ZN ? N/A E9PYI1 29551271
    111148 5v3j:F (2.064) BS06 ZN ? N/A E9PYI1 29551271
    111149 5v3j:F (2.064) BS07 ZN ? N/A E9PYI1 29551271
    111150 5v3j:F (2.064) BS08 ZN ? N/A E9PYI1 29551271
    111151 5v3j:F (2.064) BS09 ZN ? N/A E9PYI1 29551271
    111152 5v3j:F (2.064) BS10 ZN ? N/A E9PYI1 29551271
    111153 5v3j:F (2.064) BS11 ZN ? N/A E9PYI1 29551271
    111154 5v3j:F (2.064) BS12 ZN ? N/A E9PYI1 29551271
    111155 5v3j:F (2.064) BS13 MG ? N/A E9PYI1 29551271
    111156 5v3m:C (2.091) BS03 ZN ? N/A E9PYI1 29551271
    111157 5v3m:C (2.091) BS04 ZN ? N/A E9PYI1 29551271
    111158 5v3m:C (2.091) BS05 ZN ? N/A E9PYI1 29551271
    111159 5v3m:C (2.091) BS06 ZN ? N/A E9PYI1 29551271
    111160 5v3m:C (2.091) BS07 ZN ? N/A E9PYI1 29551271
    111161 5v3m:C (2.091) BS08 ZN ? N/A E9PYI1 29551271
    111162 5v3m:C (2.091) BS09 ZN ? N/A E9PYI1 29551271
    111163 5v3m:C (2.091) BS10 ZN ? N/A E9PYI1 29551271
    111164 5v3m:C (2.091) BS11 ZN ? N/A E9PYI1 29551271
    111165 5v3m:C (2.091) BS12 ZN ? N/A E9PYI1 29551271
    111166 5v3o:C (3.2) BS02 ZN ? GO:0005515 ... Q96SW2 28425720
    111167 5v48:A (2.9965) BS01 ZN 3.4.24.11 GO:0001822 ... P08049 31204686
    111168 5v48:B (2.9965) BS01 ZN 3.4.24.11 GO:0001822 ... P08049 31204686
    111169 5v4d:A (1.6) BS01 CA ? GO:0005829 ... A0A3N4B564 N/A
    111170 5v4d:B (1.6) BS01 CA ? GO:0005829 ... A0A3N4B564 N/A
    111171 5v4d:E (1.6) BS01 CA ? GO:0005829 ... A0A3N4B564 N/A
    111172 5v4t:A (1.7) BS01 FE ? GO:0016491 ... Q970H5 N/A
    111173 5v4t:B (1.7) BS01 FE ? GO:0016491 ... Q970H5 N/A
    111174 5v58:A (2.59) BS02 ZN 6.1.1.15
    6.1.1.17
    GO:0000166 ... P07814 29273753
    111175 5v5h:A (1.5) BS01 ZN 2.7.7.48
    3.1.-.-
    3.4.19.12
    3.4.22.-
    N/A Q6TQR6 28542609
    111176 5v5x:A (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    111177 5v5x:A (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    111178 5v5x:A (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    111179 5v5x:A (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    111180 5v5x:A (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    111181 5v5x:A (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    111182 5v5x:A (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338
    111183 5v5x:A (3.5) BS08 CA ? GO:0005509 ... Q91XX3 29087338
    111184 5v5x:A (3.5) BS09 CA ? GO:0005509 ... Q91XX3 29087338
    111185 5v5x:B (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    111186 5v5x:B (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    111187 5v5x:B (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    111188 5v5x:B (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    111189 5v5x:B (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    111190 5v5x:B (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    111191 5v5x:B (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338
    111192 5v5x:B (3.5) BS08 CA ? GO:0005509 ... Q91XX3 29087338
    111193 5v5x:B (3.5) BS09 CA ? GO:0005509 ... Q91XX3 29087338
    111194 5v5x:C (3.5) BS01 CA ? GO:0005509 ... Q91XX3 29087338
    111195 5v5x:C (3.5) BS02 CA ? GO:0005509 ... Q91XX3 29087338
    111196 5v5x:C (3.5) BS03 CA ? GO:0005509 ... Q91XX3 29087338
    111197 5v5x:C (3.5) BS04 CA ? GO:0005509 ... Q91XX3 29087338
    111198 5v5x:C (3.5) BS05 CA ? GO:0005509 ... Q91XX3 29087338
    111199 5v5x:C (3.5) BS06 CA ? GO:0005509 ... Q91XX3 29087338
    111200 5v5x:C (3.5) BS07 CA ? GO:0005509 ... Q91XX3 29087338

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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