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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    110801 5uqp:B (2.4) BS01 ZN ? GO:0046872 ... Q0RYE0 N/A
    110802 5uqt:A (2.75) BS01 MN 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 28433497
    110803 5uqt:B (2.75) BS01 MN 2.4.1.-
    3.4.22.-    		 GO:0016757 ... P18177 28433497
    110804 5uqz:A (1.149) BS01 CA ? N/A Q8DTF1 29685986
    110805 5urb:A (1.9) BS01 ZN 6.1.1.10 GO:0000166 ... A0A0D5YKJ7 N/A
    110806 5urb:B (1.9) BS01 ZN 6.1.1.10 GO:0000166 ... A0A0D5YKJ7 N/A
    110807 5us2:A (1.9) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    110808 5us2:A (1.9) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    110809 5usa:A (1.8) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    110810 5usa:A (1.8) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    110811 5use:A (1.73) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    110812 5use:A (1.73) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    110813 5usg:A (1.7) BS03 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    110814 5usg:A (1.7) BS04 MG 3.1.26.4 GO:0003676 ... Q9KEI9 N/A
    110815 5usj:A (1.94) BS01 MG 3.6.5.2 GO:0003924 ... P01116 28235199
    110816 5usj:B (1.94) BS01 MG 3.6.5.2 GO:0003924 ... P01116 28235199
    110817 5usj:C (1.94) BS01 MG 3.6.5.2 GO:0003924 ... P01116 28235199
    110818 5usj:D (1.94) BS01 MG 3.6.5.2 GO:0003924 ... P01116 28235199
    110819 5usj:E (1.94) BS01 MG 3.6.5.2 GO:0003924 ... P01116 28235199
    110820 5usj:F (1.94) BS01 MG 3.6.5.2 GO:0003924 ... P01116 28235199
    110821 5uti:A (1.36) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 31808981
    110822 5utj:A (1.549) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 31808981
    110823 5utl:A (1.92) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    110824 5utl:B (1.92) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    110825 5utl:C (1.92) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    110826 5utl:D (1.92) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    110827 5utm:A (1.77) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    110828 5utm:B (1.77) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    110829 5utm:C (1.77) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    110830 5utm:D (1.77) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 N/A
    110831 5uu7:A (1.60001) BS01 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110832 5uu7:A (1.60001) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110833 5uu7:A (1.60001) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110834 5uu7:A (1.60001) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110835 5uu7:A (1.60001) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110836 5uu7:A (1.60001) BS06 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110837 5uu8:A (2.5) BS01 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110838 5uu8:A (2.5) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110839 5uu8:A (2.5) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110840 5uu8:A (2.5) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110841 5uu8:A (2.5) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110842 5uu9:A (1.59969) BS01 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110843 5uu9:A (1.59969) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110844 5uu9:A (1.59969) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110845 5uu9:A (1.59969) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110846 5uu9:A (1.59969) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110847 5uua:A (1.6) BS01 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110848 5uua:A (1.6) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110849 5uua:A (1.6) BS03 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110850 5uua:A (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110851 5uua:A (1.6) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110852 5uua:A (1.6) BS06 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110853 5uub:A (1.6) BS01 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110854 5uub:A (1.6) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110855 5uub:A (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110856 5uub:A (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110857 5uub:A (1.6) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110858 5uub:A (1.6) BS06 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110859 5uuc:A (1.60001) BS01 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110860 5uuc:A (1.60001) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110861 5uuc:A (1.60001) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110862 5uuc:A (1.60001) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110863 5uuc:A (1.60001) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110864 5uuc:A (1.60001) BS06 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110865 5uud:A (1.6) BS01 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110866 5uud:A (1.6) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110867 5uud:A (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110868 5uud:A (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110869 5uud:A (1.6) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110870 5uue:A (1.6) BS01 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110871 5uue:A (1.6) BS02 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110872 5uue:A (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110873 5uue:A (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30198901
    110874 5uue:A (1.6) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110875 5uue:A (1.6) BS06 ZN 3.4.24.27 GO:0004222 ... P00800 30198901
    110876 5uum:A (2.346) BS02 ZN ? GO:0042981 ... Q07820 28594323
    110877 5uum:A (2.346) BS03 ZN ? GO:0042981 ... Q07820 28594323
    110878 5uum:B (2.346) BS02 ZN ? GO:0042981 ... Q07820 28594323
    110879 5uum:B (2.346) BS03 ZN ? GO:0042981 ... Q07820 28594323
    110880 5uuy:A (1.88) BS01 MN ? GO:0005537 ... P58907 28939357
    110881 5uuy:A (1.88) BS02 CA ? GO:0005537 ... P58907 28939357
    110882 5uv1:A (2.4) BS01 MN 4.2.3.20 GO:0000287 ... A0A1C9J6A7 28272876
    110883 5uv1:A (2.4) BS02 MN 4.2.3.20 GO:0000287 ... A0A1C9J6A7 28272876
    110884 5uv2:A (2.2) BS01 MN 4.2.3.20 GO:0000287 ... A0A1C9J6A7 28272876
    110885 5uv2:A (2.2) BS02 MN 4.2.3.20 GO:0000287 ... A0A1C9J6A7 28272876
    110886 5uv4:A (2.3) BS02 MG ? GO:0004672 ... K7VIQ3 N/A
    110887 5uv5:A (3.0) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 28760905
    110888 5uv5:A (3.0) BS02 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 28760905
    110889 5uv5:C (3.0) BS01 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 28760905
    110890 5uv5:C (3.0) BS02 MN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 28760905
    110891 5uvd:A (1.86) BS01 MG ? GO:0046872 ... C1GM11 31108423
    110892 5uvd:A (1.86) BS02 MG ? GO:0046872 ... C1GM11 31108423
    110893 5uvl:A (2.65) BS01 CA 3.4.21.64 GO:0004252 ... P06873 28875031
    110894 5uvl:A (2.65) BS02 CA 3.4.21.64 GO:0004252 ... P06873 28875031
    110895 5uvm:A (2.3) BS01 ZN ? GO:0003824 ... A3DF72 N/A
    110896 5uvm:B (2.3) BS01 ZN ? GO:0003824 ... A3DF72 N/A
    110897 5uw2:A (2.85) BS01 ZN ? GO:0015914 ... P64605 28388411
    110898 5uw2:B (2.85) BS01 ZN ? GO:0015914 ... P64605 28388411
    110899 5uw2:B (2.85) BS02 ZN ? GO:0015914 ... P64605 28388411
    110900 5uw2:C (2.85) BS01 ZN ? GO:0015914 ... P64605 28388411
    110901 5uw2:C (2.85) BS02 ZN ? GO:0015914 ... P64605 28388411
    110902 5uw5:A (2.94) BS02 CA 3.4.21.-
    3.4.21.26    		 GO:0004252 ... R4P353 28584123
    110903 5uw5:A (2.94) BS03 CA 3.4.21.-
    3.4.21.26    		 GO:0004252 ... R4P353 28584123
    110904 5uw5:B (2.94) BS02 CA 3.4.21.-
    3.4.21.26    		 GO:0004252 ... R4P353 28584123
    110905 5uw5:C (2.94) BS02 CA 3.4.21.-
    3.4.21.26    		 GO:0004252 ... R4P353 28584123
    110906 5uw6:A (3.3) BS03 CA 3.4.21.-
    3.4.21.26    		 GO:0004252 ... R4P353 28584123
    110907 5uw6:B (3.3) BS03 CA 3.4.21.-
    3.4.21.26    		 GO:0004252 ... R4P353 28584123
    110908 5uw6:B (3.3) BS04 CA 3.4.21.-
    3.4.21.26    		 GO:0004252 ... R4P353 28584123
    110909 5uw6:C (3.3) BS03 CA 3.4.21.-
    3.4.21.26    		 GO:0004252 ... R4P353 28584123
    110910 5uw7:A (2.37) BS02 MG 3.4.21.-
    3.4.21.26    		 GO:0004252 ... R4P353 28584123
    110911 5uwf:C (1.87) BS02 ZN 3.1.4.17 GO:0004114 ... Q9Y233 28406621
    110912 5uwf:D (1.87) BS02 ZN 3.1.4.17 GO:0004114 ... Q9Y233 28406621
    110913 5uwh:A (2.26) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110914 5uwi:A (2.143) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110915 5uwj:A (2.221) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110916 5uwk:A (1.6) BS01 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110917 5uwk:A (1.6) BS02 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110918 5uwk:A (1.6) BS03 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110919 5uwk:A (1.6) BS04 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110920 5uwk:A (1.6) BS05 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110921 5uwk:B (1.6) BS01 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110922 5uwk:B (1.6) BS02 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110923 5uwk:B (1.6) BS03 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110924 5uwk:B (1.6) BS04 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110925 5uwk:B (1.6) BS05 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110926 5uwl:A (2.55) BS01 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110927 5uwl:A (2.55) BS02 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110928 5uwl:A (2.55) BS03 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110929 5uwl:A (2.55) BS04 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110930 5uwl:A (2.55) BS05 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110931 5uwl:B (2.55) BS01 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110932 5uwl:B (2.55) BS02 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110933 5uwl:B (2.55) BS03 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110934 5uwm:A (1.62) BS02 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110935 5uwm:A (1.62) BS03 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110936 5uwm:A (1.62) BS04 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110937 5uwm:A (1.62) BS05 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110938 5uwm:A (1.62) BS06 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110939 5uwm:B (1.62) BS03 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110940 5uwm:B (1.62) BS04 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110941 5uwm:B (1.62) BS05 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110942 5uwm:B (1.62) BS06 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110943 5uwm:B (1.62) BS07 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110944 5uwn:A (3.2) BS01 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110945 5uwn:A (3.2) BS02 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110946 5uwn:A (3.2) BS03 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110947 5uwn:A (3.2) BS04 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110948 5uwn:B (3.2) BS01 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110949 5uwn:B (3.2) BS02 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110950 5uwn:B (3.2) BS03 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110951 5uwn:B (3.2) BS04 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110952 5uwn:C (3.2) BS01 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110953 5uwn:C (3.2) BS02 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110954 5uwn:C (3.2) BS03 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110955 5uwn:C (3.2) BS04 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110956 5uwn:D (3.2) BS01 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110957 5uwn:D (3.2) BS02 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110958 5uwn:D (3.2) BS03 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110959 5uwn:D (3.2) BS04 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110960 5uwn:E (3.2) BS01 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110961 5uwn:E (3.2) BS02 ZN 3.4.24.- GO:0004222 ... P45452 28653849
    110962 5uwn:E (3.2) BS03 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110963 5uwn:E (3.2) BS04 CA 3.4.24.- GO:0004222 ... P45452 28653849
    110964 5uwo:A (2.347) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110965 5uwp:A (2.054) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110966 5uwq:A (2.278) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110967 5uwr:A (2.24) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110968 5uws:A (2.401) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110969 5uwt:A (2.342) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110970 5uwu:A (2.24) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110971 5uww:A (2.152) BS02 MG 3.6.5.- GO:0000054 ... P62826 28282025
    110972 5ux1:A (1.5) BS01 FE N/A GO:0006400 ... N/A N/A
    110973 5ux1:A (1.5) BS02 FE N/A GO:0006400 ... N/A N/A
    110974 5ux1:B (1.5) BS01 FE N/A GO:0006400 ... N/A N/A
    110975 5ux1:B (1.5) BS02 FE N/A GO:0006400 ... N/A N/A
    110976 5ux1:C (1.5) BS01 FE N/A GO:0006400 ... N/A N/A
    110977 5ux1:C (1.5) BS02 FE N/A GO:0006400 ... N/A N/A
    110978 5ux1:D (1.5) BS01 FE N/A GO:0006400 ... N/A N/A
    110979 5ux1:D (1.5) BS02 FE N/A GO:0006400 ... N/A N/A
    110980 5ux2:A (1.99) BS01 FE N/A GO:0071771 ... N/A N/A
    110981 5ux2:A (1.99) BS02 FE N/A GO:0071771 ... N/A N/A
    110982 5ux2:B (1.99) BS01 FE N/A GO:0071771 ... N/A N/A
    110983 5ux2:B (1.99) BS02 FE N/A GO:0071771 ... N/A N/A
    110984 5ux9:A (2.7) BS01 MG 2.3.1.28 GO:0008811 ... Q5DZD6 N/A
    110985 5ux9:B (2.7) BS01 MG 2.3.1.28 GO:0008811 ... Q5DZD6 N/A
    110986 5ux9:C (2.7) BS01 MG 2.3.1.28 GO:0008811 ... Q5DZD6 N/A
    110987 5ux9:D (2.7) BS01 MG 2.3.1.28 GO:0008811 ... Q5DZD6 N/A
    110988 5uxa:A (1.95) BS01 CA ? GO:0016740 ... O32553 29317655
    110989 5uxc:A (1.72) BS01 MG ? GO:0016740 ... C7MEP1 29317655
    110990 5uxm:A (1.54) BS05 CO 2.5.1.54 GO:0003849 ... Q9I000 29608284
    110991 5uxn:A (2.2) BS03 CO 2.5.1.54 GO:0003849 ... Q9I000 29608284
    110992 5uxo:A (2.35) BS01 CO 2.5.1.54 GO:0003849 ... Q9I000 29608284
    110993 5uxs:A (1.421) BS01 ZN ? GO:0007155 ... Q56952 28695856
    110994 5uxu:A (1.839) BS01 ZN ? GO:0007155 ... Q56952 28695856
    110995 5uy0:A (1.709) BS01 ZN ? GO:0007155 ... Q56952 28695856
    110996 5uy4:A (1.915) BS01 FE ? GO:0007155 ... Q56952 28695856
    110997 5uy5:A (2.144) BS01 MN ? GO:0007155 ... Q56952 28695856
    110998 5uy8:A (2.39) BS04 MG 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    110999 5uy8:B (2.39) BS05 MG 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    111000 5uy8:C (2.39) BS04 MG 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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