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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    109201 5tan:I (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109202 5tap:B (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109203 5tap:E (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109204 5tap:G (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109205 5tap:I (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109206 5taq:B (4.1) BS03 ZN ? GO:0005216 ... P11716 27662087
    109207 5taq:B (4.1) BS04 CA ? GO:0005216 ... P11716 27662087
    109208 5taq:E (4.1) BS03 ZN ? GO:0005216 ... P11716 27662087
    109209 5taq:E (4.1) BS04 CA ? GO:0005216 ... P11716 27662087
    109210 5taq:G (4.1) BS03 ZN ? GO:0005216 ... P11716 27662087
    109211 5taq:G (4.1) BS04 CA ? GO:0005216 ... P11716 27662087
    109212 5taq:I (4.1) BS03 ZN ? GO:0005216 ... P11716 27662087
    109213 5taq:I (4.1) BS04 CA ? GO:0005216 ... P11716 27662087
    109214 5tas:B (6.2) BS03 ZN ? GO:0005216 ... P11716 27662087
    109215 5tas:E (6.2) BS03 ZN ? GO:0005216 ... P11716 27662087
    109216 5tas:G (6.2) BS03 ZN ? GO:0005216 ... P11716 27662087
    109217 5tas:I (6.2) BS03 ZN ? GO:0005216 ... P11716 27662087
    109218 5tat:B (4.8) BS03 ZN ? GO:0005216 ... P11716 27662087
    109219 5tat:E (4.8) BS03 ZN ? GO:0005216 ... P11716 27662087
    109220 5tat:G (4.8) BS03 ZN ? GO:0005216 ... P11716 27662087
    109221 5tat:I (4.8) BS03 ZN ? GO:0005216 ... P11716 27662087
    109222 5tau:B (6.2) BS03 ZN ? GO:0005216 ... P11716 27662087
    109223 5tau:E (6.2) BS03 ZN ? GO:0005216 ... P11716 27662087
    109224 5tau:G (6.2) BS03 ZN ? GO:0005216 ... P11716 27662087
    109225 5tau:I (6.2) BS03 ZN ? GO:0005216 ... P11716 27662087
    109226 5tav:B (4.8) BS03 ZN ? GO:0005216 ... P11716 27662087
    109227 5tav:E (4.8) BS03 ZN ? GO:0005216 ... P11716 27662087
    109228 5tav:G (4.8) BS03 ZN ? GO:0005216 ... P11716 27662087
    109229 5tav:I (4.8) BS03 ZN ? GO:0005216 ... P11716 27662087
    109230 5taw:B (4.4) BS01 ZN ? GO:0005216 ... P11716 27662087
    109231 5taw:B (4.4) BS02 CA ? GO:0005216 ... P11716 27662087
    109232 5taw:E (4.4) BS01 ZN ? GO:0005216 ... P11716 27662087
    109233 5taw:E (4.4) BS02 CA ? GO:0005216 ... P11716 27662087
    109234 5taw:G (4.4) BS01 ZN ? GO:0005216 ... P11716 27662087
    109235 5taw:G (4.4) BS02 CA ? GO:0005216 ... P11716 27662087
    109236 5taw:I (4.4) BS01 ZN ? GO:0005216 ... P11716 27662087
    109237 5taw:I (4.4) BS02 CA ? GO:0005216 ... P11716 27662087
    109238 5tax:B (6.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109239 5tax:B (6.6) BS02 CA ? GO:0005216 ... P11716 27662087
    109240 5tax:E (6.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109241 5tax:E (6.6) BS02 CA ? GO:0005216 ... P11716 27662087
    109242 5tax:G (6.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109243 5tax:G (6.6) BS02 CA ? GO:0005216 ... P11716 27662087
    109244 5tax:I (6.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109245 5tax:I (6.6) BS02 CA ? GO:0005216 ... P11716 27662087
    109246 5tay:B (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109247 5tay:B (4.6) BS02 CA ? GO:0005216 ... P11716 27662087
    109248 5tay:E (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109249 5tay:E (4.6) BS02 CA ? GO:0005216 ... P11716 27662087
    109250 5tay:G (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109251 5tay:G (4.6) BS02 CA ? GO:0005216 ... P11716 27662087
    109252 5tay:I (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109253 5tay:I (4.6) BS02 CA ? GO:0005216 ... P11716 27662087
    109254 5taz:B (4.3) BS01 ZN ? GO:0005216 ... P11716 27662087
    109255 5taz:B (4.3) BS02 CA ? GO:0005216 ... P11716 27662087
    109256 5taz:E (4.3) BS01 ZN ? GO:0005216 ... P11716 27662087
    109257 5taz:E (4.3) BS02 CA ? GO:0005216 ... P11716 27662087
    109258 5taz:G (4.3) BS01 ZN ? GO:0005216 ... P11716 27662087
    109259 5taz:G (4.3) BS02 CA ? GO:0005216 ... P11716 27662087
    109260 5taz:I (4.3) BS01 ZN ? GO:0005216 ... P11716 27662087
    109261 5taz:I (4.3) BS02 CA ? GO:0005216 ... P11716 27662087
    109262 5tb0:B (4.4) BS01 ZN ? GO:0005216 ... P11716 27662087
    109263 5tb0:E (4.4) BS01 ZN ? GO:0005216 ... P11716 27662087
    109264 5tb0:G (4.4) BS01 ZN ? GO:0005216 ... P11716 27662087
    109265 5tb0:I (4.4) BS01 ZN ? GO:0005216 ... P11716 27662087
    109266 5tb1:B (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109267 5tb1:E (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109268 5tb1:G (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109269 5tb1:I (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109270 5tb2:B (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109271 5tb2:E (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109272 5tb2:G (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109273 5tb2:I (4.6) BS01 ZN ? GO:0005216 ... P11716 27662087
    109274 5tb3:B (4.7) BS01 ZN ? GO:0005216 ... P11716 27662087
    109275 5tb3:E (4.7) BS01 ZN ? GO:0005216 ... P11716 27662087
    109276 5tb3:G (4.7) BS01 ZN ? GO:0005216 ... P11716 27662087
    109277 5tb3:I (4.7) BS01 ZN ? GO:0005216 ... P11716 27662087
    109278 5tb4:B (4.5) BS01 ZN ? GO:0005216 ... P11716 27662087
    109279 5tb4:E (4.5) BS01 ZN ? GO:0005216 ... P11716 27662087
    109280 5tb4:G (4.5) BS01 ZN ? GO:0005216 ... P11716 27662087
    109281 5tb4:I (4.5) BS01 ZN ? GO:0005216 ... P11716 27662087
    109282 5tb7:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... Q5F7A4 28584144
    109283 5tb7:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... Q5F7A4 28584144
    109284 5tb7:B (1.9) BS01 CU 1.7.2.1 GO:0005507 ... Q5F7A4 28584144
    109285 5tb7:B (1.9) BS02 CU 1.7.2.1 GO:0005507 ... Q5F7A4 28584144
    109286 5tb7:C (1.9) BS01 CU 1.7.2.1 GO:0005507 ... Q5F7A4 28584144
    109287 5tb7:C (1.9) BS02 CU 1.7.2.1 GO:0005507 ... Q5F7A4 28584144
    109288 5tb8:A (2.0) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    109289 5tb8:A (2.0) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    109290 5tb8:A (2.0) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    109291 5tb8:A (2.0) BS08 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    109292 5tb8:A (2.0) BS09 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    109293 5tb9:A (2.49) BS05 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    109294 5tb9:A (2.49) BS06 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    109295 5tb9:A (2.49) BS07 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    109296 5tb9:A (2.49) BS08 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    109297 5tbb:A (2.39) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 27959534
    109298 5tbn:A (-1.00) BS02 ZN ? N/A Q9BVI0 27760318
    109299 5tbn:A (-1.00) BS03 ZN ? N/A Q9BVI0 27760318
    109300 5tbw:AB (3.0) BS03 MG ? GO:0002181 ... P02406 29064494
    109301 5tbw:AB (3.0) BS04 MG ? GO:0002181 ... P02406 29064494
    109302 5tbw:AK (3.0) BS04 ZN ? GO:0000448 ... P49166 29064494
    109303 5tbw:AN (3.0) BS02 ZN ? GO:0003735 ... P0CH08 29064494
    109304 5tbw:AP (3.0) BS02 ZN ? GO:0002181 ... P0CX27 29064494
    109305 5tbw:AQ (3.0) BS02 ZN ? GO:0002181 ... P0CX25 29064494
    109306 5tbw:CD (3.0) BS03 MG ? GO:0002181 ... P0CX45 29064494
    109307 5tbw:CE (3.0) BS02 MG ? GO:0000027 ... P14126 29064494
    109308 5tbw:CE (3.0) BS03 MG ? GO:0000027 ... P14126 29064494
    109309 5tbw:CE (3.0) BS06 MG ? GO:0000027 ... P14126 29064494
    109310 5tbw:CP (3.0) BS04 MG ? GO:0002181 ... P05748 29064494
    109311 5tbw:CQ (3.0) BS02 MG ? GO:0000470 ... P26784 29064494
    109312 5tbw:CQ (3.0) BS03 MG ? GO:0000470 ... P26784 29064494
    109313 5tbw:CV (3.0) BS03 MG ? GO:0002181 ... Q02753 29064494
    109314 5tbw:DH (3.0) BS03 MG ? GO:0000027 ... P05744 29064494
    109315 5tbw:DI (3.0) BS02 MG ? GO:0002181 ... P87262 29064494
    109316 5tbw:DL (3.0) BS05 ZN ? GO:0000448 ... P49166 29064494
    109317 5tbw:DO (3.0) BS02 MG ? GO:0003735 ... P0CH08 29064494
    109318 5tbw:DO (3.0) BS03 ZN ? GO:0003735 ... P0CH08 29064494
    109319 5tbw:DQ (3.0) BS03 ZN ? GO:0002181 ... P0CX27 29064494
    109320 5tbw:DR (3.0) BS02 ZN ? GO:0002181 ... P0CX25 29064494
    109321 5tbw:b (3.0) BS02 ZN ? GO:0003735 ... P39939 29064494
    109322 5tbw:c9 (3.0) BS02 MG ? GO:0000028 ... P07280 29064494
    109323 5tbw:d3 (3.0) BS02 MG ? GO:0000462 ... P0CX29 29064494
    109324 5tbw:d6 (3.0) BS02 ZN ? GO:0003735 ... P39939 29064494
    109325 5tbw:d9 (3.0) BS02 ZN ? GO:0002181 ... P41057 29064494
    109326 5tbw:e (3.0) BS02 MG ? GO:0002181 ... P41057 29064494
    109327 5tbw:e (3.0) BS03 ZN ? GO:0002181 ... P41057 29064494
    109328 5tbw:g (3.0) BS02 ZN ? GO:0003735 ... P05759 29064494
    109329 5tbw:i (3.0) BS03 MG ? N/A P39015 29064494
    109330 5tbw:j (3.0) BS03 MG ? GO:0002181 ... P0CX45 29064494
    109331 5tbw:j (3.0) BS04 MG ? GO:0002181 ... P0CX45 29064494
    109332 5tbw:l (3.0) BS03 MG ? GO:0002181 ... P10664 29064494
    109333 5tbw:r (3.0) BS03 MG ? GO:0000027 ... P41805 29064494
    109334 5tbw:sM (3.0) BS03 MG ? N/A P39015 29064494
    109335 5tbw:t (3.0) BS03 MG ? GO:0002181 ... Q12690 29064494
    109336 5tbw:x (3.0) BS03 MG ? GO:0000448 ... P05740 29064494
    109337 5tcd:A (2.4) BS01 ZN 3.1.4.12 N/A Q6UWV6 28292932
    109338 5tcd:A (2.4) BS02 ZN 3.1.4.12 N/A Q6UWV6 28292932
    109339 5td3:A (1.75) BS01 ZN 1.13.11.1 GO:0003824 ... A4JR51 N/A
    109340 5td3:B (1.75) BS01 ZN 1.13.11.1 GO:0003824 ... A4JR51 N/A
    109341 5td4:A (2.3) BS11 CA 3.2.1.1 GO:0003824 ... P04746 27756128
    109342 5td5:A (1.718) BS02 ZN 3.5.4.38 GO:0003824 ... Q9UH17 27991903
    109343 5td7:A (2.85) BS01 ZN 3.5.1.48
    3.5.1.62    		 GO:0005634 ... F1QCV2 28516954
    109344 5td9:A (2.318) BS01 MG 4.2.1.11 GO:0000015 ... P09104 N/A
    109345 5td9:B (2.318) BS01 MG 4.2.1.11 GO:0000015 ... P09104 N/A
    109346 5tda:A (0.79) BS02 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    109347 5tda:A (0.79) BS03 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    109348 5tda:A (0.79) BS04 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    109349 5tdb:A (1.101) BS02 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    109350 5tdb:A (1.101) BS03 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    109351 5tdb:A (1.101) BS04 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    109352 5tdc:A (1.607) BS02 ZN 2.3.2.27 GO:0008270 ... Q8IWV7 28392261
    109353 5tdc:A (1.607) BS03 ZN 2.3.2.27 GO:0008270 ... Q8IWV7 28392261
    109354 5tdc:A (1.607) BS04 ZN 2.3.2.27 GO:0008270 ... Q8IWV7 28392261
    109355 5tdc:C (1.607) BS02 ZN 2.3.2.27 GO:0008270 ... Q8IWV7 28392261
    109356 5tdc:C (1.607) BS03 ZN 2.3.2.27 GO:0008270 ... Q8IWV7 28392261
    109357 5tdc:C (1.607) BS04 ZN 2.3.2.27 GO:0008270 ... Q8IWV7 28392261
    109358 5tdd:A (1.55) BS02 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    109359 5tdd:A (1.55) BS03 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    109360 5tdd:A (1.55) BS04 ZN 2.3.2.27 GO:0008270 ... Q8IWV8 28392261
    109361 5tdf:A (1.8) BS03 MG 2.3.3.8 GO:0046912 ... P53396 28777081
    109362 5tdm:A (2.1) BS03 MG 2.3.3.8 GO:0046912 ... P53396 28777081
    109363 5tdm:B (2.1) BS01 MG 2.3.3.8 GO:0003824 ... P53396 28777081
    109364 5tdr:A (1.42) BS02 ZN ? N/A P36124 27697561
    109365 5tdr:A (1.42) BS03 ZN ? N/A P36124 27697561
    109366 5tds:A (1.719) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109367 5tds:A (1.719) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109368 5tds:D (1.719) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109369 5tds:D (1.719) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109370 5tds:D (1.719) BS03 MG 1.14.13.236 GO:0004497 ... Q00456 28346937
    109371 5tdt:A (1.818) BS04 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109372 5tdt:A (1.818) BS05 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109373 5tdt:D (1.818) BS03 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109374 5tdt:D (1.818) BS04 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109375 5tdu:A (1.742) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109376 5tdu:A (1.742) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109377 5tdv:A (2.001) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109378 5tdv:A (2.001) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109379 5tdv:D (2.001) BS01 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109380 5tdv:D (2.001) BS02 FE 1.14.13.236 GO:0004497 ... Q00456 28346937
    109381 5tdw:A (1.7) BS02 ZN ? N/A P36124 27697561
    109382 5tdw:A (1.7) BS03 ZN ? N/A P36124 27697561
    109383 5tdz:A (2.0) BS02 MG 2.3.3.8 GO:0046912 ... P53396 28777081
    109384 5tea:A (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    109385 5tea:B (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    109386 5tea:C (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    109387 5tea:D (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    109388 5tea:E (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    109389 5tea:F (1.85) BS01 CA 3.6.1.1 GO:0000287 ... Q9K0G4 N/A
    109390 5ter:A (2.7) BS02 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0003676 ... P03366 27994756
    109391 5tes:A (2.4) BS02 MG 2.3.3.8 GO:0046912 ... P53396 28777081
    109392 5tf0:A (2.2021) BS01 MG 3.2.1.21 GO:0004553 ... B3C777 N/A
    109393 5tf0:B (2.2021) BS01 MG 3.2.1.21 GO:0004553 ... B3C777 N/A
    109394 5tf7:A (1.931) BS01 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    109395 5tf8:A (1.861) BS02 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    109396 5tf9:A (2.5) BS03 MN 2.7.11.1 GO:0004672 ... Q9H4A3 27712055
    109397 5tf9:A (2.5) BS04 CA 2.7.11.1 GO:0004672 ... Q9H4A3 27712055
    109398 5tf9:B (2.5) BS03 MN 2.7.11.1 GO:0004672 ... Q9H4A3 27712055
    109399 5tfa:A (1.87) BS02 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    109400 5tfb:A (1.87) BS01 MG 5.6.1.6 GO:0005524 ... P13569 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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