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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    109001 5t73:C (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    109002 5t73:C (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    109003 5t73:D (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    109004 5t73:D (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    109005 5t74:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29357237
    109006 5t75:A (1.5) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29357237
    109007 5t77:A (2.0) BS01 ZN ? GO:0005886 ... B7IE18 28024149
    109008 5t77:A (2.0) BS02 CA ? GO:0005886 ... B7IE18 28024149
    109009 5t7j:A (1.65) BS01 ZN ? N/A Q2U8Y3 28045386
    109010 5t7j:A (1.65) BS02 ZN ? N/A Q2U8Y3 28045386
    109011 5t7j:A (1.65) BS03 ZN ? N/A Q2U8Y3 28045386
    109012 5t7j:A (1.65) BS04 ZN ? N/A Q2U8Y3 28045386
    109013 5t7j:A (1.65) BS05 ZN ? N/A Q2U8Y3 28045386
    109014 5t7k:A (1.3) BS01 ZN ? N/A Q2U8Y3 28045386
    109015 5t7k:A (1.3) BS02 ZN ? N/A Q2U8Y3 28045386
    109016 5t7l:A (2.83) BS01 PT ? GO:0005507 ... O00244 31283225
    109017 5t7l:B (2.83) BS01 CU 7.2.2.8 GO:0005507 ... Q04656 31283225
    109018 5t7n:A (1.6) BS02 ZN ? N/A Q2U8Y3 28045386
    109019 5t7n:A (1.6) BS03 ZN ? N/A Q2U8Y3 28045386
    109020 5t7n:A (1.6) BS04 ZN ? N/A Q2U8Y3 28045386
    109021 5t7p:A (2.16) BS01 MN ? GO:0005537 ... P02867 28754321
    109022 5t7p:A (2.16) BS02 CA ? GO:0005537 ... P02867 28754321
    109023 5t7p:B (2.16) BS01 MN ? GO:0005537 ... P02867 28754321
    109024 5t7p:B (2.16) BS02 CA ? GO:0005537 ... P02867 28754321
    109025 5t8d:A (2.15) BS03 CA N/A GO:0004519 ... N/A 28873986
    109026 5t8d:A (2.15) BS04 CA N/A GO:0004519 ... N/A 28873986
    109027 5t8d:A (2.15) BS05 CA N/A GO:0004519 ... N/A 28873986
    109028 5t8g:A (2.04) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    109029 5t8g:A (2.04) BS02 MG 2.3.3.9 GO:0000287 ... P9WK17 27738104
    109030 5t8r:A (2.4) BS02 ZN ? N/A Q9UIF9 28341809
    109031 5t8r:A (2.4) BS03 ZN ? N/A Q9UIF9 28341809
    109032 5t8r:B (2.4) BS01 ZN ? N/A Q9UIF9 28341809
    109033 5t8r:B (2.4) BS02 ZN ? N/A Q9UIF9 28341809
    109034 5t8r:C (2.4) BS01 ZN ? N/A Q9UIF9 28341809
    109035 5t8r:C (2.4) BS02 ZN ? N/A Q9UIF9 28341809
    109036 5t8r:D (2.4) BS02 ZN ? N/A Q9UIF9 28341809
    109037 5t8r:D (2.4) BS03 ZN ? N/A Q9UIF9 28341809
    109038 5t8z:A (1.85) BS02 FE2 3.5.1.88 GO:0006412 ... A0A0H3KPJ9 N/A
    109039 5t91:A (1.53) BS01 CA 3.1.4.46 GO:0005576 ... P37965 27780866
    109040 5t9b:G (1.62) BS01 CA 3.1.4.46 GO:0005576 ... P37965 27780866
    109041 5t9c:E (1.48) BS01 CA 3.1.4.46 GO:0005576 ... P37965 27780866
    109042 5t9i:A (2.091) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109043 5t9i:A (2.091) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109044 5t9i:A (2.091) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109045 5t9i:A (2.091) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109046 5t9i:A (2.091) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    109047 5t9j:B (3.00013) BS03 MG 3.1.-.- GO:0003677 ... Q17RS7 26682650
    109048 5t9k:A (2.1) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109049 5t9k:A (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109050 5t9k:A (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109051 5t9k:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109052 5t9k:A (2.1) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    109053 5t9m:B (4.0) BS01 ZN ? GO:0003151 ... P11716 27662087
    109054 5t9m:B (4.0) BS02 CA ? GO:0003151 ... P11716 27662087
    109055 5t9m:E (4.0) BS01 ZN ? GO:0003151 ... P11716 27662087
    109056 5t9m:E (4.0) BS02 CA ? GO:0003151 ... P11716 27662087
    109057 5t9m:G (4.0) BS01 ZN ? GO:0003151 ... P11716 27662087
    109058 5t9m:G (4.0) BS02 CA ? GO:0003151 ... P11716 27662087
    109059 5t9m:I (4.0) BS01 ZN ? GO:0003151 ... P11716 27662087
    109060 5t9m:I (4.0) BS02 CA ? GO:0003151 ... P11716 27662087
    109061 5t9n:B (3.8) BS01 ZN ? GO:0003151 ... P11716 27662087
    109062 5t9n:B (3.8) BS02 CA ? GO:0003151 ... P11716 27662087
    109063 5t9n:E (3.8) BS01 ZN ? GO:0003151 ... P11716 27662087
    109064 5t9n:E (3.8) BS02 CA ? GO:0003151 ... P11716 27662087
    109065 5t9n:G (3.8) BS01 ZN ? GO:0003151 ... P11716 27662087
    109066 5t9n:G (3.8) BS02 CA ? GO:0003151 ... P11716 27662087
    109067 5t9n:I (3.8) BS01 ZN ? GO:0003151 ... P11716 27662087
    109068 5t9n:I (3.8) BS02 CA ? GO:0003151 ... P11716 27662087
    109069 5t9q:A (2.1) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109070 5t9q:A (2.1) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109071 5t9q:A (2.1) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109072 5t9q:A (2.1) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109073 5t9q:A (2.1) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    109074 5t9r:B (5.8) BS01 ZN ? GO:0003151 ... P11716 27662087
    109075 5t9r:B (5.8) BS02 CA ? GO:0003151 ... P11716 27662087
    109076 5t9r:E (5.8) BS01 ZN ? GO:0003151 ... P11716 27662087
    109077 5t9r:E (5.8) BS02 CA ? GO:0003151 ... P11716 27662087
    109078 5t9r:G (5.8) BS01 ZN ? GO:0003151 ... P11716 27662087
    109079 5t9r:G (5.8) BS02 CA ? GO:0003151 ... P11716 27662087
    109080 5t9r:I (5.8) BS01 ZN ? GO:0003151 ... P11716 27662087
    109081 5t9r:I (5.8) BS02 CA ? GO:0003151 ... P11716 27662087
    109082 5t9s:B (4.2) BS01 ZN ? GO:0003151 ... P11716 27662087
    109083 5t9s:B (4.2) BS02 CA ? GO:0003151 ... P11716 27662087
    109084 5t9s:E (4.2) BS01 ZN ? GO:0003151 ... P11716 27662087
    109085 5t9s:E (4.2) BS02 CA ? GO:0003151 ... P11716 27662087
    109086 5t9s:G (4.2) BS01 ZN ? GO:0003151 ... P11716 27662087
    109087 5t9s:G (4.2) BS02 CA ? GO:0003151 ... P11716 27662087
    109088 5t9s:I (4.2) BS01 ZN ? GO:0003151 ... P11716 27662087
    109089 5t9s:I (4.2) BS02 CA ? GO:0003151 ... P11716 27662087
    109090 5t9t:A (3.5) BS01 CA ? GO:0005509 ... Q8K486 27782885
    109091 5t9t:A (3.5) BS02 CA ? GO:0005509 ... Q8K486 27782885
    109092 5t9t:A (3.5) BS03 CA ? GO:0005509 ... Q8K486 27782885
    109093 5t9t:A (3.5) BS04 CA ? GO:0005509 ... Q8K486 27782885
    109094 5t9t:A (3.5) BS05 CA ? GO:0005509 ... Q8K486 27782885
    109095 5t9t:A (3.5) BS06 CA ? GO:0005509 ... Q8K486 27782885
    109096 5t9t:A (3.5) BS07 CA ? GO:0005509 ... Q8K486 27782885
    109097 5t9t:A (3.5) BS08 CA ? GO:0005509 ... Q8K486 27782885
    109098 5t9t:A (3.5) BS09 CA ? GO:0005509 ... Q8K486 27782885
    109099 5t9t:A (3.5) BS10 CA ? GO:0005509 ... Q8K486 27782885
    109100 5t9t:A (3.5) BS11 CA ? GO:0005509 ... Q8K486 27782885
    109101 5t9t:A (3.5) BS12 CA ? GO:0005509 ... Q8K486 27782885
    109102 5t9t:B (3.5) BS01 CA ? GO:0005509 ... Q8K486 27782885
    109103 5t9t:B (3.5) BS02 CA ? GO:0005509 ... Q8K486 27782885
    109104 5t9t:B (3.5) BS03 CA ? GO:0005509 ... Q8K486 27782885
    109105 5t9t:B (3.5) BS04 CA ? GO:0005509 ... Q8K486 27782885
    109106 5t9t:B (3.5) BS05 CA ? GO:0005509 ... Q8K486 27782885
    109107 5t9t:B (3.5) BS06 CA ? GO:0005509 ... Q8K486 27782885
    109108 5t9t:B (3.5) BS07 CA ? GO:0005509 ... Q8K486 27782885
    109109 5t9t:B (3.5) BS08 CA ? GO:0005509 ... Q8K486 27782885
    109110 5t9t:B (3.5) BS09 CA ? GO:0005509 ... Q8K486 27782885
    109111 5t9t:B (3.5) BS10 CA ? GO:0005509 ... Q8K486 27782885
    109112 5t9t:B (3.5) BS11 CA ? GO:0005509 ... Q8K486 27782885
    109113 5t9t:B (3.5) BS12 CA ? GO:0005509 ... Q8K486 27782885
    109114 5t9t:B (3.5) BS13 CA ? GO:0005509 ... Q8K486 27782885
    109115 5t9t:B (3.5) BS14 CA ? GO:0005509 ... Q8K486 27782885
    109116 5t9v:B (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109117 5t9v:B (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    109118 5t9v:E (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109119 5t9v:E (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    109120 5t9v:G (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109121 5t9v:G (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    109122 5t9v:I (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109123 5t9v:I (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    109124 5ta0:A (1.4) BS05 CA ? N/A A0A2D0TCD2 29535379
    109125 5ta0:A (1.4) BS06 CA ? N/A A0A2D0TCD2 29535379
    109126 5ta0:B (1.4) BS01 CA ? N/A A0A2D0TCD2 29535379
    109127 5ta0:B (1.4) BS02 CA ? N/A A0A2D0TCD2 29535379
    109128 5ta1:A (2.3) BS01 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    109129 5ta1:A (2.3) BS02 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    109130 5ta3:B (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109131 5ta3:B (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    109132 5ta3:E (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109133 5ta3:E (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    109134 5ta3:G (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109135 5ta3:G (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    109136 5ta3:I (4.4) BS03 ZN ? GO:0005216 ... P11716 27662087
    109137 5ta3:I (4.4) BS04 CA ? GO:0005216 ... P11716 27662087
    109138 5ta5:A (1.65) BS05 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    109139 5ta5:A (1.65) BS06 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    109140 5ta5:A (1.65) BS07 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    109141 5ta5:B (1.65) BS01 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    109142 5ta5:B (1.65) BS02 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    109143 5ta5:B (1.65) BS03 CA ? GO:0046872 ... A0A2D0TCD3 29535379
    109144 5ta6:A (2.5) BS02 ZN 2.7.11.21 GO:0004672 ... P53350 28169164
    109145 5ta8:A (2.6) BS01 ZN 2.7.11.21 GO:0004672 ... P53350 28169164
    109146 5tab:A (1.25) BS01 ZN ? N/A Q9BVI0 27760318
    109147 5tab:A (1.25) BS02 ZN ? N/A Q9BVI0 27760318
    109148 5tac:A (2.04) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109149 5tac:A (2.04) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109150 5tac:A (2.04) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109151 5tac:A (2.04) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109152 5tac:A (2.04) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    109153 5tad:A (2.09) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109154 5tad:A (2.09) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109155 5tad:A (2.09) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109156 5tad:A (2.09) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109157 5tad:A (2.09) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    109158 5tae:A (2.302) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109159 5tae:A (2.302) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109160 5tae:A (2.302) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109161 5tae:A (2.302) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109162 5tae:A (2.302) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    109163 5tai:A (2.301) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109164 5tai:A (2.301) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109165 5tai:A (2.301) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109166 5tai:A (2.301) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109167 5tai:A (2.301) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    109168 5taj:A (2.031) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109169 5taj:A (2.031) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109170 5taj:A (2.031) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109171 5taj:A (2.031) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109172 5taj:A (2.031) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    109173 5tak:A (2.003) BS01 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109174 5tak:A (2.003) BS02 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109175 5tak:A (2.003) BS03 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109176 5tak:A (2.003) BS04 CA 3.4.24.27 GO:0004222 ... P00800 N/A
    109177 5tak:A (2.003) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 N/A
    109178 5tal:B (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109179 5tal:B (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109180 5tal:E (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109181 5tal:E (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109182 5tal:G (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109183 5tal:G (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109184 5tal:I (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109185 5tal:I (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109186 5tam:B (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109187 5tam:B (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109188 5tam:E (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109189 5tam:E (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109190 5tam:G (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109191 5tam:G (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109192 5tam:I (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109193 5tam:I (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109194 5tan:B (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109195 5tan:B (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109196 5tan:E (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109197 5tan:E (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109198 5tan:G (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    109199 5tan:G (4.3) BS04 CA ? GO:0005216 ... P11716 27662087
    109200 5tan:I (4.3) BS03 ZN ? GO:0005216 ... P11716 27662087
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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