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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    108801 5t0k:A (1.7) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108802 5t0k:A (1.7) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108803 5t0k:B (1.7) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108804 5t0k:B (1.7) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108805 5t0k:B (1.7) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108806 5t0k:B (1.7) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108807 5t0m:A (1.896) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108808 5t0m:A (1.896) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108809 5t0m:A (1.896) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108810 5t0m:A (1.896) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108811 5t0m:B (1.896) BS02 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108812 5t0m:B (1.896) BS03 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108813 5t0m:B (1.896) BS04 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108814 5t0m:B (1.896) BS05 ZN 2.1.1.-
    2.1.1.367    		 GO:0002039 ... Q96KQ7 27648579
    108815 5t0u:A (3.199) BS03 ZN ? N/A P49711 28529057
    108816 5t0u:A (3.199) BS04 ZN ? N/A P49711 28529057
    108817 5t0u:A (3.199) BS05 ZN ? N/A P49711 28529057
    108818 5t0u:A (3.199) BS06 ZN ? N/A P49711 28529057
    108819 5t0u:A (3.199) BS07 ZN ? N/A P49711 28529057
    108820 5t0u:A (3.199) BS08 ZN ? N/A P49711 28529057
    108821 5t0u:D (3.199) BS03 ZN ? N/A P49711 28529057
    108822 5t0u:D (3.199) BS04 ZN ? N/A P49711 28529057
    108823 5t0u:D (3.199) BS05 ZN ? N/A P49711 28529057
    108824 5t0u:D (3.199) BS06 ZN ? N/A P49711 28529057
    108825 5t0u:D (3.199) BS07 ZN ? N/A P49711 28529057
    108826 5t0u:D (3.199) BS08 ZN ? N/A P49711 28529057
    108827 5t0x:A (-1.00) BS03 CA ? GO:0005102 ... P0DP33 N/A
    108828 5t0x:A (-1.00) BS04 CA ? GO:0005102 ... P0DP33 N/A
    108829 5t0x:A (-1.00) BS05 CA ? GO:0005102 ... P0DP33 N/A
    108830 5t0x:A (-1.00) BS06 CA ? GO:0005102 ... P0DP33 N/A
    108831 5t13:A (2.19) BS03 MG 3.5.2.15 GO:0016787 ... P0A3V4 28345631
    108832 5t14:A (3.0) BS04 MG 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    108833 5t14:A (3.0) BS05 MG 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    108834 5t14:B (3.0) BS04 MG 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    108835 5t14:B (3.0) BS05 MG 2.7.7.7 GO:0003684 ... Q9UBT6 27894903
    108836 5t15:B (3.6) BS01 ZN ? GO:0003151 ... P11716 27662087
    108837 5t15:B (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    108838 5t15:E (3.6) BS01 ZN ? GO:0003151 ... P11716 27662087
    108839 5t15:E (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    108840 5t15:G (3.6) BS01 ZN ? GO:0003151 ... P11716 27662087
    108841 5t15:G (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    108842 5t15:I (3.6) BS01 ZN ? GO:0003151 ... P11716 27662087
    108843 5t15:I (3.6) BS02 CA ? GO:0003151 ... P11716 27662087
    108844 5t1a:A (2.806) BS03 ZN 3.2.1.17 GO:0003796 ... P00720
    P41597    		 27926736
    108845 5t2h:A (2.517) BS03 CA N/A GO:0004519 ... N/A 28637173
    108846 5t2h:A (2.517) BS04 CA N/A GO:0004519 ... N/A 28637173
    108847 5t2n:A (2.079) BS03 CA N/A GO:0004519 ... N/A 28637173
    108848 5t2n:A (2.079) BS04 CA N/A GO:0004519 ... N/A 28637173
    108849 5t2n:A (2.079) BS05 CA N/A GO:0004519 ... N/A 28637173
    108850 5t2o:A (2.801) BS03 CA N/A GO:0004519 ... N/A 28637173
    108851 5t2o:A (2.801) BS04 CA N/A GO:0004519 ... N/A 28637173
    108852 5t2t:A (1.967) BS01 MN 2.7.7.48
    3.1.-.-    		 N/A P14240 29765612
    108853 5t30:A (1.77) BS01 MN 1.15.1.1 GO:0000302 ... P04179 28461152
    108854 5t30:B (1.77) BS01 MN 1.15.1.1 GO:0000302 ... P04179 28461152
    108855 5t3h:A (1.55) BS01 CA 3.4.21.4 GO:0004175 ... P00760 27841370
    108856 5t3r:A (3.1) BS01 MG ? GO:0016020 ... Q8A6W4 28077872
    108857 5t3r:D (3.1) BS01 MG ? N/A Q8A6W3 28077872
    108858 5t41:A (3.149) BS01 MG 3.1.3.3 GO:0000287 ... A0QJI1 N/A
    108859 5t45:A (2.8) BS02 MG ? GO:0003774 ... P10587 27815532
    108860 5t4i:A (2.389) BS03 MN 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    108861 5t4i:B (2.389) BS03 MN 3.1.30.- GO:0003676 ... Q9Y2C4 28466855
    108862 5t4m:A (2.24) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    108863 5t4m:A (2.24) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    108864 5t4m:A (2.24) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    108865 5t4m:A (2.24) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    108866 5t4m:A (2.24) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    108867 5t4m:B (2.24) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    108868 5t4m:B (2.24) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    108869 5t4m:B (2.24) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    108870 5t4m:B (2.24) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    108871 5t4m:B (2.24) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    108872 5t4n:A (2.701) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    108873 5t4n:A (2.701) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    108874 5t4n:A (2.701) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    108875 5t4n:A (2.701) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    108876 5t4n:A (2.701) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    108877 5t4n:B (2.701) BS01 CA ? GO:0005509 ... Q96QU1 28238533
    108878 5t4n:B (2.701) BS02 CA ? GO:0005509 ... Q96QU1 28238533
    108879 5t4n:B (2.701) BS03 CA ? GO:0005509 ... Q96QU1 28238533
    108880 5t4n:B (2.701) BS04 CA ? GO:0005509 ... Q96QU1 28238533
    108881 5t4n:B (2.701) BS05 CA ? GO:0005509 ... Q96QU1 28238533
    108882 5t4y:A (3.1) BS01 MG ? GO:0016020 ... Q8A6W4 28077872
    108883 5t4y:A (3.1) BS02 MG ? GO:0016020 ... Q8A6W4 28077872
    108884 5t4y:B (3.1) BS01 MG ? GO:0016020 ... Q8A6W4 28077872
    108885 5t4y:B (3.1) BS02 MG ? GO:0016020 ... Q8A6W4 28077872
    108886 5t4y:C (3.1) BS01 MG ? N/A Q8A6W3 28077872
    108887 5t4z:L (1.991) BS01 CA N/A N/A N/A 28249163
    108888 5t50:A (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    108889 5t50:A (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    108890 5t50:B (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    108891 5t50:B (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    108892 5t52:A (1.7) BS01 CA ? GO:0005576 ... P86993 27973758
    108893 5t52:A (1.7) BS02 CA ? GO:0005576 ... P86993 27973758
    108894 5t52:B (1.7) BS01 CA ? GO:0005576 ... P86993 27973758
    108895 5t52:B (1.7) BS02 CA ? GO:0005576 ... P86993 27973758
    108896 5t53:A (2.699) BS02 ZN 2.3.1.- N/A Q5FWF5 27803161
    108897 5t54:A (1.65) BS02 CA ? GO:0005576 ... P86993 27973758
    108898 5t54:A (1.65) BS03 CA ? GO:0005576 ... P86993 27973758
    108899 5t54:B (1.65) BS02 CA ? GO:0005576 ... P86993 27973758
    108900 5t54:B (1.65) BS03 CA ? GO:0005576 ... P86993 27973758
    108901 5t55:A (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    108902 5t55:A (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    108903 5t55:B (1.43) BS01 CA ? GO:0005576 ... P86993 27973758
    108904 5t55:B (1.43) BS02 CA ? GO:0005576 ... P86993 27973758
    108905 5t57:A (1.65) BS02 CA 1.1.1.421 GO:0000166 ... F8GV06 N/A
    108906 5t57:A (1.65) BS03 ZN 1.1.1.421 GO:0000166 ... F8GV06 N/A
    108907 5t5h:R (2.54) BS05 MG ? GO:0002181 ... Q4DC23 27791004
    108908 5t5h:n (2.54) BS04 ZN ? GO:0003723 ... Q4DXW6 27791004
    108909 5t5h:o (2.54) BS04 ZN ? GO:0003735 ... Q4DAV9 27791004
    108910 5t5h:t (2.54) BS03 ZN ? GO:0003735 ... Q4CV79 27791004
    108911 5t5i:A (1.9) BS01 ZN ? GO:0016810 ... O74030 27846502
    108912 5t5i:A (1.9) BS02 ZN ? GO:0016810 ... O74030 27846502
    108913 5t5i:A (1.9) BS03 MG ? GO:0016810 ... O74030 27846502
    108914 5t5i:C (1.9) BS01 CA 1.2.7.12 GO:0015948 ... O74031 27846502
    108915 5t5i:I (1.9) BS01 ZN ? GO:0016810 ... O74030 27846502
    108916 5t5i:I (1.9) BS02 ZN ? GO:0016810 ... O74030 27846502
    108917 5t5i:I (1.9) BS03 MG ? GO:0016810 ... O74030 27846502
    108918 5t5i:K (1.9) BS01 CA 1.2.7.12 GO:0015948 ... O74031 27846502
    108919 5t5j:A (1.35) BS02 CA ? GO:0005576 ... P86993 27973758
    108920 5t5j:A (1.35) BS03 CA ? GO:0005576 ... P86993 27973758
    108921 5t5j:B (1.35) BS01 CA ? GO:0005576 ... P86993 27973758
    108922 5t5j:B (1.35) BS02 CA ? GO:0005576 ... P86993 27973758
    108923 5t5l:A (1.17) BS01 CA ? GO:0005576 ... P86993 27973758
    108924 5t5l:A (1.17) BS02 CA ? GO:0005576 ... P86993 27973758
    108925 5t5l:B (1.17) BS01 CA ? GO:0005576 ... P86993 27973758
    108926 5t5l:B (1.17) BS02 CA ? GO:0005576 ... P86993 27973758
    108927 5t5m:A (2.5) BS01 ZN 1.2.99.5 GO:0016810 ... O74030 27846502
    108928 5t5m:A (2.5) BS02 ZN 1.2.99.5 GO:0016810 ... O74030 27846502
    108929 5t5m:A (2.5) BS03 MG 1.2.99.5 GO:0016810 ... O74030 27846502
    108930 5t5m:C (2.5) BS01 MG 1.2.7.12 GO:0015948 ... O74031 27846502
    108931 5t5n:A (3.1) BS03 CA N/A GO:0005254 ... N/A 27821745
    108932 5t5n:B (3.1) BS02 CA N/A GO:0005254 ... N/A 27821745
    108933 5t5n:C (3.1) BS02 CA N/A GO:0005254 ... N/A 27821745
    108934 5t5n:D (3.1) BS02 CA N/A GO:0005254 ... N/A 27821745
    108935 5t5n:E (3.1) BS01 CA N/A GO:0005254 ... N/A 27821745
    108936 5t5o:A (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    108937 5t5o:A (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    108938 5t5o:B (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    108939 5t5o:B (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    108940 5t5o:C (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    108941 5t5o:C (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    108942 5t5o:D (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    108943 5t5o:D (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    108944 5t5o:E (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    108945 5t5o:E (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    108946 5t5o:F (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    108947 5t5o:F (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    108948 5t5o:G (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    108949 5t5o:G (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    108950 5t5o:H (2.75) BS02 CA ? GO:0005576 ... P86993 27973758
    108951 5t5o:H (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    108952 5t5o:I (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    108953 5t5o:I (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    108954 5t5o:J (2.75) BS03 CA ? GO:0005576 ... P86993 27973758
    108955 5t5o:J (2.75) BS04 CA ? GO:0005576 ... P86993 27973758
    108956 5t5p:A (1.66) BS02 CA ? GO:0005576 ... P86993 27973758
    108957 5t5p:A (1.66) BS03 CA ? GO:0005576 ... P86993 27973758
    108958 5t5p:B (1.66) BS02 CA ? GO:0005576 ... P86993 27973758
    108959 5t5p:B (1.66) BS03 CA ? GO:0005576 ... P86993 27973758
    108960 5t5v:A (1.8) BS01 FE 1.13.11.12 GO:0005506 ... P08170 28691068
    108961 5t5v:B (1.8) BS01 FE 1.13.11.12 GO:0005506 ... P08170 28691068
    108962 5t61:A (2.55) BS01 ZN N/A GO:0016810 ... N/A 27846502
    108963 5t61:A (2.55) BS02 ZN N/A GO:0016810 ... N/A 27846502
    108964 5t61:C (2.55) BS01 MG N/A GO:0015948 ... N/A 27846502
    108965 5t61:G (2.55) BS01 ZN N/A GO:0016810 ... N/A 27846502
    108966 5t61:G (2.55) BS02 ZN N/A GO:0016810 ... N/A 27846502
    108967 5t61:I (2.55) BS01 MG N/A GO:0015948 ... N/A 27846502
    108968 5t61:M (2.55) BS01 ZN N/A GO:0016810 ... N/A 27846502
    108969 5t61:M (2.55) BS02 ZN N/A GO:0016810 ... N/A 27846502
    108970 5t61:O (2.55) BS01 MG N/A GO:0015948 ... N/A 27846502
    108971 5t61:S (2.55) BS01 ZN N/A GO:0016810 ... N/A 27846502
    108972 5t61:S (2.55) BS02 ZN N/A GO:0016810 ... N/A 27846502
    108973 5t61:U (2.55) BS01 MG N/A GO:0015948 ... N/A 27846502
    108974 5t61:Y (2.55) BS01 ZN N/A GO:0016810 ... N/A 27846502
    108975 5t61:Y (2.55) BS02 ZN N/A GO:0016810 ... N/A 27846502
    108976 5t61:a (2.55) BS01 MG N/A GO:0015948 ... N/A 27846502
    108977 5t61:e (2.55) BS01 ZN N/A GO:0016810 ... N/A 27846502
    108978 5t61:e (2.55) BS02 ZN N/A GO:0016810 ... N/A 27846502
    108979 5t61:g (2.55) BS01 MG N/A GO:0015948 ... N/A 27846502
    108980 5t61:k (2.55) BS01 ZN N/A GO:0016810 ... N/A 27846502
    108981 5t61:k (2.55) BS02 ZN N/A GO:0016810 ... N/A 27846502
    108982 5t61:m (2.55) BS01 MG N/A GO:0015948 ... N/A 27846502
    108983 5t61:q (2.55) BS01 ZN N/A GO:0016810 ... N/A 27846502
    108984 5t61:q (2.55) BS02 ZN N/A GO:0016810 ... N/A 27846502
    108985 5t61:s (2.55) BS01 MG N/A GO:0015948 ... N/A 27846502
    108986 5t62:W (3.3) BS03 MG 3.6.1.- GO:0000027 ... P53145 28179369
    108987 5t64:A (1.7) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    108988 5t64:B (1.7) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    108989 5t67:A (1.6) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    108990 5t67:B (1.6) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    108991 5t6b:A (2.0) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    108992 5t6b:B (2.0) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    108993 5t6b:C (2.0) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    108994 5t6b:D (2.0) BS01 ZN ? GO:0016740 ... B3TMQ9 27595766
    108995 5t71:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29357237
    108996 5t72:A (1.3) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29357237
    108997 5t73:A (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    108998 5t73:A (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    108999 5t73:B (2.599) BS01 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    109000 5t73:B (2.599) BS02 NA 1.2.1.12 GO:0000166 ... Q6GIL8 27967218
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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