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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    106001 5pya:A (1.55) BS02 ZN ? N/A P23497 28436492
    106002 5pya:A (1.55) BS03 ZN ? N/A P23497 28436492
    106003 5pya:B (1.55) BS01 ZN ? N/A P23497 28436492
    106004 5pya:B (1.55) BS02 ZN ? N/A P23497 28436492
    106005 5pyb:A (1.74) BS01 ZN ? N/A P23497 28436492
    106006 5pyb:A (1.74) BS02 ZN ? N/A P23497 28436492
    106007 5pyb:A (1.74) BS03 ZN ? N/A P23497 28436492
    106008 5pyb:B (1.74) BS01 ZN ? N/A P23497 28436492
    106009 5pyb:B (1.74) BS02 ZN ? N/A P23497 28436492
    106010 5pyc:A (1.87) BS01 ZN ? N/A P23497 28436492
    106011 5pyc:A (1.87) BS02 ZN ? N/A P23497 28436492
    106012 5pyc:A (1.87) BS03 ZN ? N/A P23497 28436492
    106013 5pyc:B (1.87) BS01 ZN ? N/A P23497 28436492
    106014 5pyc:B (1.87) BS02 ZN ? N/A P23497 28436492
    106015 5pyd:A (2.02) BS01 ZN ? N/A P23497 28436492
    106016 5pyd:A (2.02) BS02 ZN ? N/A P23497 28436492
    106017 5pyd:A (2.02) BS03 ZN ? N/A P23497 28436492
    106018 5pyd:B (2.02) BS01 ZN ? N/A P23497 28436492
    106019 5pyd:B (2.02) BS02 ZN ? N/A P23497 28436492
    106020 5pye:A (1.81) BS01 ZN ? N/A P23497 28436492
    106021 5pye:A (1.81) BS02 ZN ? N/A P23497 28436492
    106022 5pye:A (1.81) BS03 ZN ? N/A P23497 28436492
    106023 5pye:B (1.81) BS01 ZN ? N/A P23497 28436492
    106024 5pye:B (1.81) BS02 ZN ? N/A P23497 28436492
    106025 5pyf:A (1.83) BS01 ZN ? N/A P23497 28436492
    106026 5pyf:A (1.83) BS02 ZN ? N/A P23497 28436492
    106027 5pyf:A (1.83) BS03 ZN ? N/A P23497 28436492
    106028 5pyf:B (1.83) BS01 ZN ? N/A P23497 28436492
    106029 5pyf:B (1.83) BS02 ZN ? N/A P23497 28436492
    106030 5pyg:A (1.95) BS01 ZN ? N/A P23497 28436492
    106031 5pyg:A (1.95) BS02 ZN ? N/A P23497 28436492
    106032 5pyg:B (1.95) BS01 ZN ? N/A P23497 28436492
    106033 5pyg:B (1.95) BS02 ZN ? N/A P23497 28436492
    106034 5pyh:A (1.74) BS01 ZN ? N/A P23497 28436492
    106035 5pyh:A (1.74) BS02 ZN ? N/A P23497 28436492
    106036 5pyh:B (1.74) BS01 ZN ? N/A P23497 28436492
    106037 5pyh:B (1.74) BS02 ZN ? N/A P23497 28436492
    106038 5pyi:A (2.29) BS01 ZN ? N/A P23497 28436492
    106039 5pyi:A (2.29) BS02 ZN ? N/A P23497 28436492
    106040 5pyi:B (2.29) BS01 ZN ? N/A P23497 28436492
    106041 5pyi:B (2.29) BS02 ZN ? N/A P23497 28436492
    106042 5pyj:A (1.97) BS01 ZN ? N/A P23497 28436492
    106043 5pyj:A (1.97) BS02 ZN ? N/A P23497 28436492
    106044 5pyj:B (1.97) BS01 ZN ? N/A P23497 28436492
    106045 5pyj:B (1.97) BS02 ZN ? N/A P23497 28436492
    106046 5pyk:A (1.88) BS01 ZN ? N/A P23497 28436492
    106047 5pyk:A (1.88) BS02 ZN ? N/A P23497 28436492
    106048 5pyk:B (1.88) BS01 ZN ? N/A P23497 28436492
    106049 5pyk:B (1.88) BS02 ZN ? N/A P23497 28436492
    106050 5pyl:A (1.53) BS01 ZN ? N/A P23497 28436492
    106051 5pyl:A (1.53) BS02 ZN ? N/A P23497 28436492
    106052 5pyl:A (1.53) BS03 ZN ? N/A P23497 28436492
    106053 5pyl:B (1.53) BS01 ZN ? N/A P23497 28436492
    106054 5pyl:B (1.53) BS02 ZN ? N/A P23497 28436492
    106055 5pym:A (1.7) BS01 ZN ? N/A P23497 28436492
    106056 5pym:A (1.7) BS02 ZN ? N/A P23497 28436492
    106057 5pym:B (1.7) BS01 ZN ? N/A P23497 28436492
    106058 5pym:B (1.7) BS02 ZN ? N/A P23497 28436492
    106059 5pyn:A (1.89) BS01 ZN ? N/A P23497 28436492
    106060 5pyn:A (1.89) BS02 ZN ? N/A P23497 28436492
    106061 5pyn:B (1.89) BS01 ZN ? N/A P23497 28436492
    106062 5pyn:B (1.89) BS02 ZN ? N/A P23497 28436492
    106063 5pyo:A (1.67) BS01 ZN ? N/A P23497 28436492
    106064 5pyo:A (1.67) BS02 ZN ? N/A P23497 28436492
    106065 5pyo:B (1.67) BS01 ZN ? N/A P23497 28436492
    106066 5pyo:B (1.67) BS02 ZN ? N/A P23497 28436492
    106067 5pyp:A (1.63) BS01 ZN ? N/A P23497 28436492
    106068 5pyp:A (1.63) BS02 ZN ? N/A P23497 28436492
    106069 5pyp:B (1.63) BS01 ZN ? N/A P23497 28436492
    106070 5pyp:B (1.63) BS02 ZN ? N/A P23497 28436492
    106071 5pyq:A (1.97) BS01 ZN ? N/A P23497 28436492
    106072 5pyq:A (1.97) BS02 ZN ? N/A P23497 28436492
    106073 5pyq:B (1.97) BS01 ZN ? N/A P23497 28436492
    106074 5pyq:B (1.97) BS02 ZN ? N/A P23497 28436492
    106075 5pyr:A (1.94) BS01 ZN ? N/A P23497 28436492
    106076 5pyr:A (1.94) BS02 ZN ? N/A P23497 28436492
    106077 5pyr:B (1.94) BS01 ZN ? N/A P23497 28436492
    106078 5pyr:B (1.94) BS02 ZN ? N/A P23497 28436492
    106079 5pys:A (2.09) BS01 ZN ? N/A P23497 28436492
    106080 5pys:A (2.09) BS02 ZN ? N/A P23497 28436492
    106081 5pys:B (2.09) BS01 ZN ? N/A P23497 28436492
    106082 5pys:B (2.09) BS02 ZN ? N/A P23497 28436492
    106083 5pyt:A (2.13) BS01 ZN ? N/A P23497 28436492
    106084 5pyt:A (2.13) BS02 ZN ? N/A P23497 28436492
    106085 5pyt:B (2.13) BS01 ZN ? N/A P23497 28436492
    106086 5pyt:B (2.13) BS02 ZN ? N/A P23497 28436492
    106087 5pyu:A (1.74) BS01 ZN ? N/A P23497 28436492
    106088 5pyu:A (1.74) BS02 ZN ? N/A P23497 28436492
    106089 5pyu:B (1.74) BS01 ZN ? N/A P23497 28436492
    106090 5pyu:B (1.74) BS02 ZN ? N/A P23497 28436492
    106091 5pyv:A (1.94) BS01 ZN ? N/A P23497 28436492
    106092 5pyv:A (1.94) BS02 ZN ? N/A P23497 28436492
    106093 5pyv:B (1.94) BS01 ZN ? N/A P23497 28436492
    106094 5pyv:B (1.94) BS02 ZN ? N/A P23497 28436492
    106095 5pyw:A (1.45) BS01 ZN ? N/A P23497 28436492
    106096 5pyw:A (1.45) BS02 ZN ? N/A P23497 28436492
    106097 5pyw:A (1.45) BS03 ZN ? N/A P23497 28436492
    106098 5pyw:B (1.45) BS01 ZN ? N/A P23497 28436492
    106099 5pyw:B (1.45) BS02 ZN ? N/A P23497 28436492
    106100 5pyx:A (1.57) BS01 ZN ? N/A P23497 28436492
    106101 5pyx:A (1.57) BS02 ZN ? N/A P23497 28436492
    106102 5pyx:B (1.57) BS01 ZN ? N/A P23497 28436492
    106103 5pyx:B (1.57) BS02 ZN ? N/A P23497 28436492
    106104 5pyy:A (1.64) BS01 ZN ? N/A P23497 28436492
    106105 5pyy:A (1.64) BS02 ZN ? N/A P23497 28436492
    106106 5pyy:B (1.64) BS01 ZN ? N/A P23497 28436492
    106107 5pyy:B (1.64) BS02 ZN ? N/A P23497 28436492
    106108 5pyz:A (1.59) BS01 ZN ? N/A P23497 28436492
    106109 5pyz:A (1.59) BS02 ZN ? N/A P23497 28436492
    106110 5pyz:A (1.59) BS03 ZN ? N/A P23497 28436492
    106111 5pyz:B (1.59) BS01 ZN ? N/A P23497 28436492
    106112 5pyz:B (1.59) BS02 ZN ? N/A P23497 28436492
    106113 5pz0:A (2.13) BS01 ZN ? N/A P23497 28436492
    106114 5pz0:A (2.13) BS02 ZN ? N/A P23497 28436492
    106115 5pz0:B (2.13) BS01 ZN ? N/A P23497 28436492
    106116 5pz0:B (2.13) BS02 ZN ? N/A P23497 28436492
    106117 5pz1:A (2.13) BS01 ZN ? N/A P23497 28436492
    106118 5pz1:A (2.13) BS02 ZN ? N/A P23497 28436492
    106119 5pz1:B (2.13) BS01 ZN ? N/A P23497 28436492
    106120 5pz1:B (2.13) BS02 ZN ? N/A P23497 28436492
    106121 5pz2:A (1.88) BS01 ZN ? N/A P23497 28436492
    106122 5pz2:A (1.88) BS02 ZN ? N/A P23497 28436492
    106123 5pz2:A (1.88) BS03 ZN ? N/A P23497 28436492
    106124 5pz2:B (1.88) BS01 ZN ? N/A P23497 28436492
    106125 5pz2:B (1.88) BS02 ZN ? N/A P23497 28436492
    106126 5pz3:A (1.93) BS01 ZN ? N/A P23497 28436492
    106127 5pz3:A (1.93) BS02 ZN ? N/A P23497 28436492
    106128 5pz3:B (1.93) BS01 ZN ? N/A P23497 28436492
    106129 5pz3:B (1.93) BS02 ZN ? N/A P23497 28436492
    106130 5pz4:A (1.94) BS01 ZN ? N/A P23497 28436492
    106131 5pz4:A (1.94) BS02 ZN ? N/A P23497 28436492
    106132 5pz4:B (1.94) BS01 ZN ? N/A P23497 28436492
    106133 5pz4:B (1.94) BS02 ZN ? N/A P23497 28436492
    106134 5pz5:A (2.64) BS01 ZN ? N/A P23497 28436492
    106135 5pz5:A (2.64) BS02 ZN ? N/A P23497 28436492
    106136 5pz5:B (2.64) BS01 ZN ? N/A P23497 28436492
    106137 5pz5:B (2.64) BS02 ZN ? N/A P23497 28436492
    106138 5pz6:A (1.87) BS01 ZN ? N/A P23497 28436492
    106139 5pz6:A (1.87) BS02 ZN ? N/A P23497 28436492
    106140 5pz6:A (1.87) BS03 ZN ? N/A P23497 28436492
    106141 5pz6:B (1.87) BS01 ZN ? N/A P23497 28436492
    106142 5pz6:B (1.87) BS02 ZN ? N/A P23497 28436492
    106143 5pz7:A (1.54) BS01 ZN ? N/A P23497 28436492
    106144 5pz7:A (1.54) BS02 ZN ? N/A P23497 28436492
    106145 5pz7:A (1.54) BS03 ZN ? N/A P23497 28436492
    106146 5pz7:B (1.54) BS01 ZN ? N/A P23497 28436492
    106147 5pz7:B (1.54) BS02 ZN ? N/A P23497 28436492
    106148 5pz8:A (1.52) BS01 ZN ? N/A P23497 28436492
    106149 5pz8:A (1.52) BS02 ZN ? N/A P23497 28436492
    106150 5pz8:A (1.52) BS03 ZN ? N/A P23497 28436492
    106151 5pz8:B (1.52) BS01 ZN ? N/A P23497 28436492
    106152 5pz8:B (1.52) BS02 ZN ? N/A P23497 28436492
    106153 5pz9:A (2.01) BS01 ZN ? N/A P23497 28436492
    106154 5pz9:A (2.01) BS02 ZN ? N/A P23497 28436492
    106155 5pz9:B (2.01) BS01 ZN ? N/A P23497 28436492
    106156 5pz9:B (2.01) BS02 ZN ? N/A P23497 28436492
    106157 5pza:A (1.59) BS01 ZN ? N/A P23497 28436492
    106158 5pza:A (1.59) BS02 ZN ? N/A P23497 28436492
    106159 5pza:A (1.59) BS03 ZN ? N/A P23497 28436492
    106160 5pza:B (1.59) BS01 ZN ? N/A P23497 28436492
    106161 5pza:B (1.59) BS02 ZN ? N/A P23497 28436492
    106162 5pzb:A (2.05) BS01 ZN ? N/A P23497 28436492
    106163 5pzb:A (2.05) BS02 ZN ? N/A P23497 28436492
    106164 5pzb:B (2.05) BS01 ZN ? N/A P23497 28436492
    106165 5pzb:B (2.05) BS02 ZN ? N/A P23497 28436492
    106166 5pzc:A (1.61) BS01 ZN ? N/A P23497 28436492
    106167 5pzc:A (1.61) BS02 ZN ? N/A P23497 28436492
    106168 5pzc:A (1.61) BS03 ZN ? N/A P23497 28436492
    106169 5pzc:B (1.61) BS01 ZN ? N/A P23497 28436492
    106170 5pzc:B (1.61) BS02 ZN ? N/A P23497 28436492
    106171 5pzd:A (1.74) BS01 ZN ? N/A P23497 28436492
    106172 5pzd:A (1.74) BS02 ZN ? N/A P23497 28436492
    106173 5pzd:A (1.74) BS03 ZN ? N/A P23497 28436492
    106174 5pzd:B (1.74) BS01 ZN ? N/A P23497 28436492
    106175 5pzd:B (1.74) BS02 ZN ? N/A P23497 28436492
    106176 5pze:A (1.82) BS01 ZN ? N/A P23497 28436492
    106177 5pze:A (1.82) BS02 ZN ? N/A P23497 28436492
    106178 5pze:A (1.82) BS03 ZN ? N/A P23497 28436492
    106179 5pze:B (1.82) BS01 ZN ? N/A P23497 28436492
    106180 5pze:B (1.82) BS02 ZN ? N/A P23497 28436492
    106181 5pzf:A (1.84) BS01 ZN ? N/A P23497 28436492
    106182 5pzf:A (1.84) BS02 ZN ? N/A P23497 28436492
    106183 5pzf:A (1.84) BS03 ZN ? N/A P23497 28436492
    106184 5pzf:B (1.84) BS01 ZN ? N/A P23497 28436492
    106185 5pzf:B (1.84) BS02 ZN ? N/A P23497 28436492
    106186 5pzg:A (1.88) BS01 ZN ? N/A P23497 28436492
    106187 5pzg:A (1.88) BS02 ZN ? N/A P23497 28436492
    106188 5pzg:A (1.88) BS03 ZN ? N/A P23497 28436492
    106189 5pzg:B (1.88) BS01 ZN ? N/A P23497 28436492
    106190 5pzg:B (1.88) BS02 ZN ? N/A P23497 28436492
    106191 5pzh:A (1.63) BS01 ZN ? N/A P23497 28436492
    106192 5pzh:A (1.63) BS02 ZN ? N/A P23497 28436492
    106193 5pzh:A (1.63) BS03 ZN ? N/A P23497 28436492
    106194 5pzh:B (1.63) BS01 ZN ? N/A P23497 28436492
    106195 5pzh:B (1.63) BS02 ZN ? N/A P23497 28436492
    106196 5pzi:A (1.62) BS01 ZN ? N/A P23497 28436492
    106197 5pzi:A (1.62) BS02 ZN ? N/A P23497 28436492
    106198 5pzi:A (1.62) BS03 ZN ? N/A P23497 28436492
    106199 5pzi:B (1.62) BS01 ZN ? N/A P23497 28436492
    106200 5pzi:B (1.62) BS02 ZN ? N/A P23497 28436492
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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