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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    103801 5nrm:B (1.4) BS03 CA ? GO:0000272 ... A0A2R2JFJ7 29367338
    103802 5nru:A (2.15) BS01 ZN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103803 5nru:A (2.15) BS02 ZN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103804 5nrx:A (2.35) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103805 5nrx:A (2.35) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103806 5nry:A (1.85) BS01 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103807 5nry:A (1.85) BS02 FE 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103808 5nrz:A (2.05) BS01 MN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103809 5nrz:A (2.05) BS02 MN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103810 5ns2:A (2.2) BS01 CO 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103811 5ns2:A (2.2) BS02 CO 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103812 5ns4:A (2.4) BS03 MG ? GO:0000049 ... P41201 29211987
    103813 5ns4:B (2.4) BS03 MG ? GO:0000049 ... P41201 29211987
    103814 5ns5:A (2.2) BS01 ZN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103815 5ns5:A (2.2) BS02 ZN 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103816 5ns5:A (2.2) BS03 CU 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103817 5ns5:A (2.2) BS04 CU 3.4.13.19 GO:0005575 ... Q4WMJ8 28525266
    103818 5nsa:A (1.273) BS02 CA ? N/A P20062 28910388
    103819 5nse:A (1.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    103820 5nse:B (1.9) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 N/A
    103821 5nsf:A (2.426) BS02 CA 6.1.1.1 GO:0000166 ... Q57834 30589180
    103822 5nsf:A (2.426) BS03 CA 6.1.1.1 GO:0000166 ... Q57834 30589180
    103823 5nsf:B (2.426) BS02 CA 6.1.1.1 GO:0000166 ... Q57834 30589180
    103824 5nsg:A (2.22) BS02 ZN ? N/A Q6MZV7 28655766
    103825 5nsm:A (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103826 5nsm:A (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103827 5nsm:B (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103828 5nsm:B (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103829 5nsm:C (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103830 5nsm:C (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103831 5nsm:D (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103832 5nsm:D (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103833 5nsm:E (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103834 5nsm:E (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103835 5nsm:F (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103836 5nsm:F (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103837 5nsm:G (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103838 5nsm:G (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103839 5nsm:H (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103840 5nsm:H (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103841 5nsm:I (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103842 5nsm:I (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103843 5nsm:J (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103844 5nsm:J (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103845 5nsm:K (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103846 5nsm:K (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103847 5nsm:L (2.4) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103848 5nsm:L (2.4) BS03 MN ? GO:0004177 ... Q385B0 28815215
    103849 5nsp:A (2.3) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29155568
    103850 5nsp:B (2.3) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29155568
    103851 5nsq:A (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103852 5nsq:A (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103853 5nsq:B (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103854 5nsq:B (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103855 5nsq:C (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103856 5nsq:C (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103857 5nsq:D (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103858 5nsq:D (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103859 5nsq:E (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103860 5nsq:E (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103861 5nsq:F (3.0) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103862 5nsq:F (3.0) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103863 5nsx:A (1.8) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103864 5nsx:B (1.8) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103865 5nt0:A (1.75) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103866 5nt0:B (1.75) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103867 5nt4:A (1.9) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103868 5nt4:B (1.9) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103869 5ntd:A (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103870 5ntd:A (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103871 5ntd:B (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103872 5ntd:B (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103873 5ntd:C (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103874 5ntd:C (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103875 5ntd:D (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103876 5ntd:D (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103877 5ntd:E (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103878 5ntd:E (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103879 5ntd:F (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103880 5ntd:F (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103881 5ntd:G (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103882 5ntd:G (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103883 5ntd:H (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103884 5ntd:H (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103885 5ntd:I (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103886 5ntd:I (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103887 5ntd:J (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103888 5ntd:J (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103889 5ntd:K (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103890 5ntd:K (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103891 5ntd:L (2.3) BS01 MN ? GO:0004177 ... Q385B0 28815215
    103892 5ntd:L (2.3) BS02 MN ? GO:0004177 ... Q385B0 28815215
    103893 5ntg:A (2.32) BS01 MN ? GO:0004177 ... V5BWE3 28815215
    103894 5ntg:B (2.32) BS01 MN ? GO:0004177 ... V5BWE3 28815215
    103895 5nth:A (2.5) BS02 MN 3.4.11.- GO:0004177 ... Q4QH17 28815215
    103896 5nth:A (2.5) BS03 MN 3.4.11.- GO:0004177 ... Q4QH17 28815215
    103897 5nuc:A (2.1) BS01 CA 3.1.31.1 GO:0003676 ... P00644 8762134
    103898 5nug:A (3.8) BS03 MG ? GO:0003723 ... Q14204 28602352
    103899 5nug:B (3.8) BS03 MG ? GO:0003723 ... Q14204 28602352
    103900 5nur:A (3.29) BS03 CA ? GO:0001530 ... P02931 29038444
    103901 5nur:C (3.29) BS01 CA ? GO:0001530 ... P02931 29038444
    103902 5nur:E (3.29) BS03 CA ? GO:0001530 ... P02931 29038444
    103903 5nus:B (2.2) BS01 ZN ? GO:0000439 ... G0RZE6 28977422
    103904 5nus:B (2.2) BS02 ZN ? GO:0000439 ... G0RZE6 28977422
    103905 5nut:A (1.6) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103906 5nut:B (1.6) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103907 5nv1:A (1.51) BS01 MG ? N/A Q60598 N/A
    103908 5nv3:A (3.39) BS02 MG 4.1.1.39 GO:0000287 ... P27997 28803776
    103909 5nv3:B (3.39) BS02 MG 4.1.1.39 GO:0000287 ... P27997 28803776
    103910 5nv3:C (3.39) BS02 MG 4.1.1.39 GO:0000287 ... P27997 28803776
    103911 5nv3:D (3.39) BS02 MG 4.1.1.39 GO:0000287 ... P27997 28803776
    103912 5nv3:E (3.39) BS03 MG 4.1.1.39 GO:0000287 ... P27997 28803776
    103913 5nv3:F (3.39) BS03 MG 4.1.1.39 GO:0000287 ... P27997 28803776
    103914 5nv3:G (3.39) BS03 MG 4.1.1.39 GO:0000287 ... P27997 28803776
    103915 5nv3:H (3.39) BS03 MG 4.1.1.39 GO:0000287 ... P27997 28803776
    103916 5nv9:A (1.95) BS01 NA ? GO:0005886 ... B4EZY7 29717135
    103917 5nv9:A (1.95) BS02 NA ? GO:0005886 ... B4EZY7 29717135
    103918 5nva:A (2.26) BS01 NA ? GO:0005886 ... B4EZY7 29717135
    103919 5nva:A (2.26) BS02 NA ? GO:0005886 ... B4EZY7 29717135
    103920 5nvc:A (1.6) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103921 5nvc:B (1.6) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103922 5nve:A (1.5) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103923 5nve:B (1.5) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103924 5nvf:A (1.55) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103925 5nvf:B (1.55) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103926 5nvh:A (1.6) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103927 5nvh:B (1.6) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103928 5nw3:A (0.59) BS01 FE ? GO:0005506 ... P24297 N/A
    103929 5nw7:A (1.85) BS01 ZN 5.3.1.8 GO:0000032 ... P34948 29687459
    103930 5nwb:A (1.6) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103931 5nwb:B (1.6) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103932 5nwc:A (1.5) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103933 5nwc:B (1.5) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103934 5nwd:A (1.45) BS02 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103935 5nwd:B (1.45) BS02 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103936 5nwe:A (2.0) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103937 5nwe:A (2.0) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103938 5nwe:B (2.0) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103939 5nwe:B (2.0) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103940 5nwe:C (2.0) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103941 5nwe:C (2.0) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103942 5nwe:D (2.0) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103943 5nwe:D (2.0) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103944 5nwg:A (1.4) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103945 5nwg:B (1.4) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103946 5nwl:B (3.93) BS01 MG ? GO:0000150 ... Q06609 29507080
    103947 5nwl:C (3.93) BS01 MG ? GO:0000150 ... Q06609 29507080
    103948 5nwl:D (3.93) BS01 MG ? GO:0000150 ... Q06609 29507080
    103949 5nwl:E (3.93) BS01 MG ? GO:0000150 ... Q06609 29507080
    103950 5nwl:I (3.93) BS01 MG ? GO:0000150 ... Q06609 29507080
    103951 5nwl:J (3.93) BS01 MG ? GO:0000150 ... Q06609 29507080
    103952 5nwl:L (3.93) BS01 MG ? GO:0000150 ... Q06609 29507080
    103953 5nwt:D (3.76) BS01 ZN 2.7.7.6 GO:0000287 ... P0A8T7 26293966
    103954 5nwt:D (3.76) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 26293966
    103955 5nx6:A (1.63) BS02 MG 4.2.3.108 GO:0000287 ... B5GMG2 28966840
    103956 5nx6:B (1.63) BS02 MG 4.2.3.108 GO:0000287 ... B5GMG2 28966840
    103957 5nx7:A (1.51) BS03 MG 4.2.3.108 GO:0000287 ... B5GMG2 28966840
    103958 5nx7:B (1.51) BS03 MG 4.2.3.108 GO:0000287 ... B5GMG2 28966840
    103959 5nxb:A (3.6) BS01 CA 3.2.1.46 GO:0004336 ... P54818 29323104
    103960 5nxb:B (3.6) BS01 CA 3.2.1.46 GO:0004336 ... P54818 29323104
    103961 5nxe:A (1.6) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103962 5nxe:B (1.6) BS01 ZN 2.4.2.-
    2.4.2.30
    GO:0003950 ... Q9H2K2 29374194
    103963 5nxg:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103964 5nxi:A (1.16) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103965 5nxl:A (1.66) BS01 CA 1.8.3.7 GO:0016491 ... D1A7C3 28544744
    103966 5nxl:A (1.66) BS02 CA 1.8.3.7 GO:0016491 ... D1A7C3 28544744
    103967 5nxm:A (1.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103968 5nxo:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103969 5nxp:A (1.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103970 5nxv:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103971 5nxw:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103972 5ny1:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103973 5ny3:A (1.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103974 5ny6:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103975 5nya:A (1.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 29316128
    103976 5nyy:A (1.28) BS01 CA 1.8.3.7 GO:0016491 ... D1A7C3 28544744
    103977 5nyy:A (1.28) BS02 CA 1.8.3.7 GO:0016491 ... D1A7C3 28544744
    103978 5nz4:A (1.36) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103979 5nz4:A (1.36) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103980 5nz4:B (1.36) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103981 5nz4:B (1.36) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103982 5nze:A (1.69) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103983 5nze:A (1.69) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103984 5nze:B (1.69) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103985 5nze:B (1.69) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103986 5nzf:A (1.75) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103987 5nzf:A (1.75) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103988 5nzf:B (1.75) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103989 5nzf:B (1.75) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103990 5nzf:C (1.75) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103991 5nzf:C (1.75) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103992 5nzf:D (1.75) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103993 5nzf:D (1.75) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103994 5nzn:A (1.73) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103995 5nzn:A (1.73) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103996 5nzn:B (1.73) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103997 5nzn:B (1.73) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103998 5nzn:C (1.73) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    103999 5nzn:C (1.73) BS02 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553
    104000 5nzn:D (1.73) BS01 CA 3.2.1.18 GO:0004308 ... C3W6G3 29933553

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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