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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    10001 1nf4:F (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10002 1nf4:F (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10003 1nf4:G (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10004 1nf4:G (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10005 1nf4:H (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10006 1nf4:H (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10007 1nf4:I (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10008 1nf4:I (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10009 1nf4:J (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10010 1nf4:J (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10011 1nf4:K (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10012 1nf4:K (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10013 1nf4:L (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10014 1nf4:L (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10015 1nf4:M (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10016 1nf4:M (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10017 1nf4:N (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10018 1nf4:N (2.05) BS03 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10019 1nf4:O (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10020 1nf4:O (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10021 1nf4:P (2.05) BS01 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10022 1nf4:P (2.05) BS02 FE2 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10023 1nf5:A (2.0) BS01 CA ? GO:0004461 ... P29752 11419947
    10024 1nf5:C (2.0) BS01 CA ? GO:0004461 ... P29752 11419947
    10025 1nf6:A (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10026 1nf6:B (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10027 1nf6:C (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10028 1nf6:D (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10029 1nf6:E (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10030 1nf6:F (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10031 1nf6:G (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10032 1nf6:H (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10033 1nf6:I (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10034 1nf6:J (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10035 1nf6:K (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10036 1nf6:L (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10037 1nf6:M (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10038 1nf6:N (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10039 1nf6:O (2.35) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10040 1nf6:P (2.35) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10041 1nfg:A (2.7) BS01 ZN 3.5.2.- GO:0005737 ... Q8VTT5 12837777
    10042 1nfg:A (2.7) BS02 ZN 3.5.2.- GO:0005737 ... Q8VTT5 12837777
    10043 1nfg:B (2.7) BS01 ZN 3.5.2.- GO:0005737 ... Q8VTT5 12837777
    10044 1nfg:B (2.7) BS02 ZN 3.5.2.- GO:0005737 ... Q8VTT5 12837777
    10045 1nfg:C (2.7) BS01 ZN 3.5.2.- GO:0005737 ... Q8VTT5 12837777
    10046 1nfg:C (2.7) BS02 ZN 3.5.2.- GO:0005737 ... Q8VTT5 12837777
    10047 1nfg:D (2.7) BS01 ZN 3.5.2.- GO:0005737 ... Q8VTT5 12837777
    10048 1nfg:D (2.7) BS02 ZN 3.5.2.- GO:0005737 ... Q8VTT5 12837777
    10049 1nfs:A (1.96) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12540835
    10050 1nfs:A (1.96) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12540835
    10051 1nfs:B (1.96) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12540835
    10052 1nfs:B (1.96) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12540835
    10053 1nft:A (2.1) BS01 FE ? GO:0005576 ... P02789 10187803
    10054 1nfu:A (2.05) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12593649
    10055 1nfv:A (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10056 1nfv:A (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10057 1nfv:B (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10058 1nfv:B (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10059 1nfv:C (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10060 1nfv:C (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10061 1nfv:D (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10062 1nfv:D (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10063 1nfv:E (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10064 1nfv:E (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10065 1nfv:F (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10066 1nfv:F (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10067 1nfv:G (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10068 1nfv:G (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10069 1nfv:H (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10070 1nfv:H (1.95) BS03 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10071 1nfv:I (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10072 1nfv:I (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10073 1nfv:J (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10074 1nfv:J (1.95) BS03 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10075 1nfv:K (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10076 1nfv:K (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10077 1nfv:L (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10078 1nfv:L (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10079 1nfv:M (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10080 1nfv:M (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10081 1nfv:N (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10082 1nfv:N (1.95) BS03 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10083 1nfv:O (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10084 1nfv:O (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10085 1nfv:P (1.95) BS01 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10086 1nfv:P (1.95) BS02 FE 1.16.3.1 GO:0003674 ... Q93PP9 12627224
    10087 1nfw:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12593649
    10088 1nfx:A (2.15) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12593649
    10089 1nfy:A (2.1) BS01 CA 3.4.21.6 GO:0004252 ... P00742 12593649
    10090 1nfz:A (1.97) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12540835
    10091 1nfz:A (1.97) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12540835
    10092 1nfz:B (1.97) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12540835
    10093 1nfz:B (1.97) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12540835
    10094 1ng0:A (2.7) BS01 CA ? GO:0001172 ... Q9E958 12781716
    10095 1ng0:A (2.7) BS02 CA ? GO:0001172 ... Q9E958 12781716
    10096 1ng0:B (2.7) BS01 CA ? GO:0001172 ... Q9E958 12781716
    10097 1ng0:B (2.7) BS02 CA ? GO:0001172 ... Q9E958 12781716
    10098 1ng0:C (2.7) BS01 CA ? GO:0001172 ... Q9E958 12781716
    10099 1ng0:C (2.7) BS02 CA ? GO:0001172 ... Q9E958 12781716
    10100 1ngi:A (2.15) BS01 CA 3.6.4.10 GO:0005524 ... P19120 8175707
    10101 1ngs:A (2.4) BS01 CA 2.2.1.1 GO:0003824 ... P23254 8999873
    10102 1ngs:B (2.4) BS03 CA 2.2.1.1 GO:0003824 ... P23254 8999873
    10103 1nhe:A (2.5) BS01 CA ? GO:0004461 ... P29752 11419947
    10104 1nhe:C (2.5) BS01 CA ? GO:0004461 ... P29752 11419947
    10105 1nhi:A (2.0) BS01 K ? GO:0005524 ... P23367 12782329
    10106 1nht:A (2.5) BS01 MG 6.3.4.4 GO:0000166 ... P0A7D4 9182542
    10107 1nhx:A (2.1) BS01 MN 2.7.11.-
    4.1.1.32
    GO:0000287 ... P35558 14552798
    10108 1ni1:B (2.3) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 12699757
    10109 1ni4:A (1.95) BS02 MG 1.2.4.1 GO:0004738 ... P08559 12651851
    10110 1ni4:C (1.95) BS01 MG 1.2.4.1 GO:0004738 ... P08559 12651851
    10111 1nia:A (2.5) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10112 1nia:A (2.5) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10113 1nia:B (2.5) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10114 1nia:B (2.5) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10115 1nia:C (2.5) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10116 1nia:C (2.5) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10117 1nib:A (2.7) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10118 1nib:A (2.7) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10119 1nib:B (2.7) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10120 1nib:B (2.7) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10121 1nib:C (2.7) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10122 1nib:C (2.7) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10123 1nic:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10124 1nic:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10125 1nid:A (2.2) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10126 1nid:A (2.2) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10127 1nie:A (1.9) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10128 1nie:A (1.9) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10129 1nif:A (1.7) BS01 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10130 1nif:A (1.7) BS02 CU 1.7.2.1 GO:0005507 ... P25006 7499203
    10131 1nik:A (4.1) BS01 ZN 2.7.7.6 GO:0000428 ... P04050 12746498
    10132 1nik:B (4.1) BS01 ZN 2.7.7.6 GO:0000428 ... P08518 12746498
    10133 1nik:C (4.1) BS01 ZN 2.7.7.6 GO:0000428 ... P16370 12746498
    10134 1nik:I (4.1) BS01 ZN 2.7.7.6 GO:0000428 ... P27999 12746498
    10135 1nik:I (4.1) BS02 ZN 2.7.7.6 GO:0000428 ... P27999 12746498
    10136 1nik:J (4.1) BS01 ZN 2.7.7.6 GO:0000428 ... P22139 12746498
    10137 1nin:A (-1.00) BS01 CU ? GO:0005507 ... P0C178 8679527
    10138 1nip:B (2.9) BS01 MG 1.18.6.1 GO:0005524 ... P00459 1529353
    10139 1niw:A (2.05) BS02 CA ? GO:0000086 ... P0DP29 12574113
    10140 1niw:A (2.05) BS03 CA ? GO:0000086 ... P0DP29 12574113
    10141 1niw:A (2.05) BS04 CA ? GO:0000086 ... P0DP29 12574113
    10142 1niw:A (2.05) BS05 CA ? GO:0000086 ... P0DP29 12574113
    10143 1niw:C (2.05) BS02 CA ? GO:0000086 ... P0DP29 12574113
    10144 1niw:C (2.05) BS03 CA ? GO:0000086 ... P0DP29 12574113
    10145 1niw:C (2.05) BS04 CA ? GO:0000086 ... P0DP29 12574113
    10146 1niw:C (2.05) BS05 CA ? GO:0000086 ... P0DP29 12574113
    10147 1niw:E (2.05) BS02 CA ? GO:0000086 ... P0DP29 12574113
    10148 1niw:E (2.05) BS03 CA ? GO:0000086 ... P0DP29 12574113
    10149 1niw:E (2.05) BS04 CA ? GO:0000086 ... P0DP29 12574113
    10150 1niw:E (2.05) BS05 CA ? GO:0000086 ... P0DP29 12574113
    10151 1niw:G (2.05) BS02 CA ? GO:0000086 ... P0DP29 12574113
    10152 1niw:G (2.05) BS03 CA ? GO:0000086 ... P0DP29 12574113
    10153 1niw:G (2.05) BS04 CA ? GO:0000086 ... P0DP29 12574113
    10154 1niw:G (2.05) BS05 CA ? GO:0000086 ... P0DP29 12574113
    10155 1nj1:A (2.55) BS01 ZN 6.1.1.15 GO:0000166 ... O26708 12578991
    10156 1nj1:A (2.55) BS02 MG 6.1.1.15 GO:0000166 ... O26708 12578991
    10157 1nj2:A (3.11) BS01 ZN 6.1.1.15 GO:0000166 ... O26708 12578991
    10158 1nj3:A (-1.00) BS01 ZN ? N/A Q9ES54 12644454
    10159 1nj5:A (2.8) BS01 ZN 6.1.1.15 GO:0000166 ... O26708 12578991
    10160 1nj5:A (2.8) BS02 MG 6.1.1.15 GO:0000166 ... O26708 12578991
    10161 1nj6:A (2.85) BS01 ZN 6.1.1.15 GO:0000166 ... O26708 12578991
    10162 1nj6:A (2.85) BS02 MG 6.1.1.15 GO:0000166 ... O26708 12578991
    10163 1njf:A (2.3) BS01 ZN 2.7.7.7 GO:0003887 ... P06710 12623013
    10164 1njf:B (2.3) BS01 ZN 2.7.7.7 GO:0003887 ... P06710 12623013
    10165 1njf:C (2.3) BS01 ZN 2.7.7.7 GO:0003887 ... P06710 12623013
    10166 1njf:D (2.3) BS01 ZN 2.7.7.7 GO:0003887 ... P06710 12623013
    10167 1njg:A (2.2) BS01 ZN 2.7.7.7 GO:0003887 ... P06710 12623013
    10168 1njg:B (2.2) BS01 ZN 2.7.7.7 GO:0003887 ... P06710 12623013
    10169 1nji:1 (3.0) BS02 MG ? GO:0003735 ... P60619 12860128
    10170 1nji:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12860128
    10171 1nji:C (3.0) BS02 MG ? GO:0002181 ... P20276 12860128
    10172 1nji:U (3.0) BS02 MG ? GO:0002181 ... P10972 12860128
    10173 1nji:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12860128
    10174 1njw:A (1.9) BS07 MG 2.7.7.7 GO:0003676 ... Q5KWC1 15035983
    10175 1njx:A (1.65) BS08 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10176 1njy:A (2.0) BS08 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10177 1njz:A (2.0) BS05 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10178 1nk4:A (1.6) BS04 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10179 1nk5:A (2.1) BS05 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10180 1nk7:A (1.9) BS06 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10181 1nk8:A (1.9) BS06 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10182 1nk9:A (1.9) BS06 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10183 1nkb:A (2.0) BS07 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10184 1nkc:A (1.8) BS05 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10185 1nke:A (1.8) BS07 MG 2.7.7.7 GO:0003676 ... P52026 15035983
    10186 1nkg:A (1.5) BS01 CA 4.2.2.23 GO:0000272 ... Q00019 15135077
    10187 1nkh:A (2.0) BS01 CA ? GO:0004461 ... P29752 11419947
    10188 1nkh:B (2.0) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 11419947
    10189 1nkh:C (2.0) BS01 CA ? GO:0004461 ... P29752 11419947
    10190 1nkh:D (2.0) BS01 MN 2.4.1.-
    2.4.1.22
    2.4.1.275
    2.4.1.38
    2.4.1.90
    GO:0005975 ... P08037 11419947
    10191 1nki:A (0.95) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 15504029
    10192 1nki:B (0.95) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 15504029
    10193 1nkq:A (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    10194 1nkq:B (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    10195 1nkq:C (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    10196 1nkq:D (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    10197 1nkq:E (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    10198 1nkq:F (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    10199 1nku:A (-1.00) BS01 ZN 3.2.2.20 GO:0003824 ... P05100 12654914
    10200 1nkx:A (1.9) BS01 FE 3.4.21.- GO:0005576 ... P24627 12888354

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218