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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    101201 5lzu:p (3.75) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    101202 5lzv:FF (3.35) BS03 MG ? GO:0000028 ... G1TFM5 27863242
    101203 5lzv:aa (3.35) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101204 5lzv:dd (3.35) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    101205 5lzv:ff (3.35) BS02 ZN ? GO:0003723 ... G1SK22 27863242
    101206 5lzv:g (3.35) BS02 ZN ? GO:0003735 ... G1TXG5 27863242
    101207 5lzv:g (3.35) BS03 MG ? GO:0003735 ... G1TXG5 27863242
    101208 5lzv:j (3.35) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    101209 5lzv:m (3.35) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101210 5lzv:o (3.35) BS04 ZN ? GO:0003735 ... G1T040 27863242
    101211 5lzv:p (3.35) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    101212 5lzw:A (3.53) BS03 MG ? GO:0002181 ... G1TT27 27863242
    101213 5lzw:FF (3.53) BS03 MG ? GO:0000028 ... G1TFM5 27863242
    101214 5lzw:aa (3.53) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101215 5lzw:dd (3.53) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    101216 5lzw:j (3.53) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    101217 5lzw:jj (3.53) BS01 MG 3.6.5.- GO:0003746 ... Q9Y450 27863242
    101218 5lzw:m (3.53) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101219 5lzw:o (3.53) BS04 ZN ? GO:0003735 ... G1T040 27863242
    101220 5lzw:p (3.53) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    101221 5lzx:aa (3.67) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101222 5lzx:dd (3.67) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    101223 5lzx:ff (3.67) BS02 ZN ? GO:0003723 ... G1SK22 27863242
    101224 5lzx:j (3.67) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    101225 5lzx:jj (3.67) BS01 MG 3.6.5.- GO:0003746 ... Q9Y450 27863242
    101226 5lzx:m (3.67) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101227 5lzx:o (3.67) BS04 ZN ? GO:0003735 ... G1T040 27863242
    101228 5lzx:p (3.67) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    101229 5lzy:aa (3.99) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101230 5lzy:dd (3.99) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    101231 5lzy:g (3.99) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101232 5lzy:j (3.99) BS03 ZN N/A GO:0003735 ... N/A 27863242
    101233 5lzy:jj (3.99) BS01 MG 3.6.5.- GO:0003746 ... Q9Y450 27863242
    101234 5lzy:m (3.99) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101235 5lzy:o (3.99) BS04 ZN ? GO:0003735 ... G1T040 27863242
    101236 5lzy:p (3.99) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    101237 5lzz:aa (3.47) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101238 5lzz:dd (3.47) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    101239 5lzz:ff (3.47) BS02 ZN ? GO:0003723 ... G1SK22 27863242
    101240 5lzz:j (3.47) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    101241 5lzz:jj (3.47) BS01 MG 3.6.5.- GO:0003746 ... Q9Y450 27863242
    101242 5lzz:m (3.47) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101243 5lzz:o (3.47) BS04 ZN ? GO:0003735 ... G1T040 27863242
    101244 5lzz:p (3.47) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    101245 5m05:A (2.675) BS02 MG ? GO:0003774 ... P10587 27815532
    101246 5m06:B (2.0) BS02 CA 2.7.11.1 GO:0004672 ... P9WI69 28054744
    101247 5m0d:A (2.4) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    101248 5m0d:A (2.4) BS04 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    101249 5m0d:A (2.4) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 28165241
    101250 5m0e:A (1.95) BS01 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    101251 5m0e:A (1.95) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    101252 5m0e:A (1.95) BS03 CA 3.1.4.39 GO:0001953 ... Q64610 28165241
    101253 5m0m:A (2.1) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    101254 5m0m:A (2.1) BS04 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    101255 5m0m:A (2.1) BS05 CA 3.1.4.39 GO:0001953 ... Q64610 28165241
    101256 5m0s:A (2.1) BS03 CA 3.1.4.39 GO:0001953 ... Q64610 28165241
    101257 5m0s:A (2.1) BS04 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    101258 5m0s:A (2.1) BS05 ZN 3.1.4.39 GO:0001953 ... Q64610 28165241
    101259 5m0t:A (2.2) BS01 FE2 ? GO:0046872 ... A0A1L1QK38 27885368
    101260 5m0t:A (2.2) BS03 ZN ? GO:0046872 ... A0A1L1QK38 27885368
    101261 5m0t:B (2.2) BS01 FE2 ? GO:0046872 ... A0A1L1QK38 27885368
    101262 5m0x:A (1.8) BS01 MG 3.2.1.22 GO:0003824 ... G4FEF4 27783466
    101263 5m0y:B (1.5) BS01 CA ? GO:0000272 ... A3DGE8 27924829
    101264 5m0y:B (1.5) BS02 CA ? GO:0000272 ... A3DGE8 27924829
    101265 5m11:A (2.9) BS01 CA ? GO:0046872 ... Q9S3Q8 27883039
    101266 5m11:A (2.9) BS02 ZN ? GO:0046872 ... Q9S3Q8 27883039
    101267 5m11:A (2.9) BS03 ZN ? GO:0046872 ... Q9S3Q8 27883039
    101268 5m11:A (2.9) BS04 ZN ? GO:0046872 ... Q9S3Q8 27883039
    101269 5m11:A (2.9) BS05 ZN ? GO:0046872 ... Q9S3Q8 27883039
    101270 5m11:A (2.9) BS06 CA ? GO:0046872 ... Q9S3Q8 27883039
    101271 5m11:A (2.9) BS07 CA ? GO:0046872 ... Q9S3Q8 27883039
    101272 5m12:A (1.53) BS01 MG 3.2.1.22 GO:0003824 ... G4FEF4 27783466
    101273 5m16:A (1.62) BS01 MG 3.2.1.22 GO:0003824 ... G4FEF4 27783466
    101274 5m1d:A (2.7) BS01 MN 4.1.1.98 GO:0005737 ... P0AAB4 28057757
    101275 5m1d:B (2.7) BS01 MN 4.1.1.98 GO:0005737 ... P0AAB4 28057757
    101276 5m1d:C (2.7) BS01 MN 4.1.1.98 GO:0005737 ... P0AAB4 28057757
    101277 5m1e:A (2.62) BS01 MN 4.1.1.98 GO:0005737 ... P0AAB5 28057757
    101278 5m1e:B (2.62) BS01 MN 4.1.1.98 GO:0005737 ... P0AAB5 28057757
    101279 5m1e:C (2.62) BS01 MN 4.1.1.98 GO:0005737 ... P0AAB5 28057757
    101280 5m1j:A5 (3.3) BS03 MG ? GO:0002181 ... P0CX45 27995908
    101281 5m1j:A5 (3.3) BS04 MG ? GO:0002181 ... P0CX45 27995908
    101282 5m1j:A5 (3.3) BS05 MG ? GO:0002181 ... P0CX45 27995908
    101283 5m1j:A5 (3.3) BS06 MG ? GO:0002181 ... P0CX45 27995908
    101284 5m1j:A6 (3.3) BS03 MG 3.6.5.- GO:0003746 ... P32769 27995908
    101285 5m1j:B5 (3.3) BS02 MG ? GO:0000027 ... P14126 27995908
    101286 5m1j:C2 (3.3) BS02 MG ? GO:0003723 ... P25443 27995908
    101287 5m1j:C5 (3.3) BS03 MG ? GO:0002181 ... P10664 27995908
    101288 5m1j:C5 (3.3) BS04 MG ? GO:0002181 ... P10664 27995908
    101289 5m1j:C5 (3.3) BS05 MG ? GO:0002181 ... P10664 27995908
    101290 5m1j:C5 (3.3) BS06 MG ? GO:0002181 ... P10664 27995908
    101291 5m1j:D5 (3.3) BS03 MG ? GO:0000027 ... P26321 27995908
    101292 5m1j:E5 (3.3) BS02 MG ? GO:0000027 ... Q02326 27995908
    101293 5m1j:F2 (3.3) BS03 MG ? GO:0000028 ... P26783 27995908
    101294 5m1j:F2 (3.3) BS04 MG ? GO:0000028 ... P26783 27995908
    101295 5m1j:I2 (3.3) BS03 MG ? GO:0000462 ... P0CX39 27995908
    101296 5m1j:I5 (3.3) BS03 MG ? GO:0000027 ... P41805 27995908
    101297 5m1j:I5 (3.3) BS04 MG ? GO:0000027 ... P41805 27995908
    101298 5m1j:I5 (3.3) BS05 MG ? GO:0000027 ... P41805 27995908
    101299 5m1j:K5 (3.3) BS02 MG ? GO:0000470 ... P26784 27995908
    101300 5m1j:K5 (3.3) BS03 MG ? GO:0000470 ... P26784 27995908
    101301 5m1j:L2 (3.3) BS02 MG ? GO:0000028 ... P0CX47 27995908
    101302 5m1j:L5 (3.3) BS03 MG ? GO:0002181 ... Q12690 27995908
    101303 5m1j:N5 (3.3) BS03 MG ? GO:0002181 ... P05748 27995908
    101304 5m1j:N5 (3.3) BS04 MG ? GO:0002181 ... P05748 27995908
    101305 5m1j:N5 (3.3) BS05 MG ? GO:0002181 ... P05748 27995908
    101306 5m1j:P5 (3.3) BS03 MG ? GO:0000448 ... P05740 27995908
    101307 5m1j:Q5 (3.3) BS02 MG ? GO:0002181 ... P0CX49 27995908
    101308 5m1j:Q5 (3.3) BS03 MG ? GO:0002181 ... P0CX49 27995908
    101309 5m1j:R5 (3.3) BS03 MG ? GO:0002181 ... P0CX82 27995908
    101310 5m1j:S2 (3.3) BS02 MG ? GO:0000054 ... P0CX55 27995908
    101311 5m1j:S2 (3.3) BS03 MG ? GO:0000054 ... P0CX55 27995908
    101312 5m1j:S2 (3.3) BS04 MG ? GO:0000054 ... P0CX55 27995908
    101313 5m1j:S5 (3.3) BS03 MG ? GO:0002181 ... P0CX23 27995908
    101314 5m1j:T2 (3.3) BS02 MG ? GO:0000028 ... P07280 27995908
    101315 5m1j:T5 (3.3) BS03 MG ? GO:0002181 ... Q02753 27995908
    101316 5m1j:X2 (3.3) BS02 MG ? GO:0000462 ... P0CX29 27995908
    101317 5m1j:Y5 (3.3) BS03 MG ? GO:0002181 ... P05743 27995908
    101318 5m1j:a2 (3.3) BS03 ZN ? GO:0003735 ... P39939 27995908
    101319 5m1j:a5 (3.3) BS02 MG ? GO:0002181 ... P02406 27995908
    101320 5m1j:a5 (3.3) BS03 MG ? GO:0002181 ... P02406 27995908
    101321 5m1j:a5 (3.3) BS04 MG ? GO:0002181 ... P02406 27995908
    101322 5m1j:a5 (3.3) BS05 MG ? GO:0002181 ... P02406 27995908
    101323 5m1j:a5 (3.3) BS06 MG ? GO:0002181 ... P02406 27995908
    101324 5m1j:b2 (3.3) BS02 ZN ? GO:0000028 ... P35997 27995908
    101325 5m1j:d5 (3.3) BS02 MG ? GO:0002181 ... P0C2H8 27995908
    101326 5m1j:e5 (3.3) BS02 MG ? GO:0002181 ... P38061 27995908
    101327 5m1j:e5 (3.3) BS03 MG ? GO:0002181 ... P38061 27995908
    101328 5m1j:f2 (3.3) BS02 ZN ? GO:0003735 ... P05759 27995908
    101329 5m1j:f5 (3.3) BS02 MG ? GO:0000027 ... P05744 27995908
    101330 5m1j:h5 (3.3) BS03 MG ? GO:0000463 ... P0CX84 27995908
    101331 5m1j:j5 (3.3) BS03 MG ? GO:0000448 ... P49166 27995908
    101332 5m1j:j5 (3.3) BS04 MG ? GO:0000448 ... P49166 27995908
    101333 5m1j:j5 (3.3) BS05 MG ? GO:0000448 ... P49166 27995908
    101334 5m1j:j5 (3.3) BS06 ZN ? GO:0000448 ... P49166 27995908
    101335 5m1j:l5 (3.3) BS03 MG ? GO:0002181 ... P04650 27995908
    101336 5m1j:m5 (3.3) BS02 MG ? GO:0003735 ... P0CH08 27995908
    101337 5m1j:m5 (3.3) BS03 MG ? GO:0003735 ... P0CH08 27995908
    101338 5m1j:m5 (3.3) BS04 ZN ? GO:0003735 ... P0CH08 27995908
    101339 5m1j:p5 (3.3) BS03 ZN ? GO:0002181 ... P0CX26 27995908
    101340 5m1k:B (1.2) BS01 MG 3.1.21.-
    3.6.4.-
    N/A A0A1L4BKS3 28100693
    101341 5m1m:A (1.5) BS01 MG ? GO:0019028 ... Q6I7B9 28120862
    101342 5m1m:A (1.5) BS02 MG ? GO:0019028 ... Q6I7B9 28120862
    101343 5m1n:A (1.2) BS01 MN 3.1.21.-
    3.6.4.-
    N/A A0A1L4BKS3 28100693
    101344 5m1n:B (1.2) BS01 MN 3.1.21.-
    3.6.4.-
    N/A A0A1L4BKS3 28100693
    101345 5m1o:A (1.6) BS01 CO 3.1.21.-
    3.6.4.-
    N/A A0A1L4BKS3 28100693
    101346 5m1o:B (1.6) BS01 CO 3.1.21.-
    3.6.4.-
    N/A A0A1L4BKS3 28100693
    101347 5m1p:A (1.1) BS01 CA 3.1.21.-
    3.6.4.-
    N/A A0A1L4BKS3 28100693
    101348 5m1q:A (1.45) BS01 ZN 3.1.21.-
    3.6.4.-
    N/A A0A1L4BKS3 28100693
    101349 5m1q:A (1.45) BS02 ZN 3.1.21.-
    3.6.4.-
    N/A A0A1L4BKS3 28100693
    101350 5m1q:A (1.45) BS03 ZN 3.1.21.-
    3.6.4.-
    N/A A0A1L4BKS3 28100693
    101351 5m1r:A (1.64) BS02 MG 2.7.2.3 GO:0004618 ... P00558 29995887
    101352 5m1r:A (1.64) BS03 MG 2.7.2.3 GO:0004618 ... P00558 29995887
    101353 5m1t:A (2.27) BS02 MG ? N/A Q9I310 28186120
    101354 5m1t:A (2.27) BS03 MG ? N/A Q9I310 28186120
    101355 5m1t:B (2.27) BS02 MG ? N/A Q9I310 28186120
    101356 5m1t:B (2.27) BS03 MG ? N/A Q9I310 28186120
    101357 5m1z:A (2.0) BS03 MN 3.2.1.55 GO:0016798 ... B8ZY56 28266777
    101358 5m21:B (1.99) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101359 5m21:D (1.99) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101360 5m21:F (1.99) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101361 5m21:H (1.99) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101362 5m22:B (2.4) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101363 5m22:D (2.4) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101364 5m22:F (2.4) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101365 5m22:H (2.4) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101366 5m26:B (1.9) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101367 5m26:D (1.9) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101368 5m26:F (1.9) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101369 5m26:H (1.9) BS01 FE 1.13.11.- GO:0046872 ... F8TW83 28232026
    101370 5m27:A (2.0) BS02 CA N/A GO:0009190 ... N/A 28336405
    101371 5m27:B (2.0) BS02 CA N/A GO:0009190 ... N/A 28336405
    101372 5m2a:A (1.8) BS02 MG N/A GO:0009190 ... N/A 28336405
    101373 5m2b:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 28098422
    101374 5m2b:J (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P22141 28098422
    101375 5m2b:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P28062
    P30656
    28098422
    101376 5m2b:N (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P38624 28098422
    101377 5m2b:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 28098422
    101378 5m2b:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P28062
    P30656
    28098422
    101379 5m2b:Z (2.7) BS02 MG 3.4.25.1 GO:0005839 ... P20618
    P23724
    28098422
    101380 5m2o:B (1.26) BS01 CA N/A GO:0000272 ... N/A 28389644
    101381 5m2o:B (1.26) BS02 CA N/A GO:0000272 ... N/A 28389644
    101382 5m2s:B (1.7) BS01 CA N/A GO:0000272 ... N/A 28389644
    101383 5m2s:B (1.7) BS02 CA N/A GO:0000272 ... N/A 28389644
    101384 5m2x:A (4.991) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101385 5m2x:A (4.991) BS03 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101386 5m2x:B (4.991) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101387 5m2x:C (4.991) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101388 5m2x:C (4.991) BS03 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101389 5m2x:D (4.991) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101390 5m2x:D (4.991) BS03 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101391 5m2x:E (4.991) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101392 5m2x:E (4.991) BS03 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101393 5m2x:F (4.991) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101394 5m2z:A (4.8) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101395 5m2z:A (4.8) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101396 5m2z:B (4.8) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101397 5m2z:B (4.8) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101398 5m2z:C (4.8) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101399 5m2z:D (4.8) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555
    101400 5m2z:E (4.8) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003968 ... A0A0X8GJ44 30951555

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218