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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    101001 5lyb:M7 (3.25) BS03 MG ? GO:0000448 ... P05740 27827794
    101002 5lyb:M7 (3.25) BS04 MG ? GO:0000448 ... P05740 27827794
    101003 5lyb:M7 (3.25) BS05 MG ? GO:0000448 ... P05740 27827794
    101004 5lyb:M8 (3.25) BS02 MG ? GO:0002181 ... P0CX49 27827794
    101005 5lyb:M8 (3.25) BS03 MG ? GO:0002181 ... P0CX49 27827794
    101006 5lyb:M8 (3.25) BS04 MG ? GO:0002181 ... P0CX49 27827794
    101007 5lyb:M9 (3.25) BS03 MG ? GO:0002181 ... P0CX82 27827794
    101008 5lyb:M9 (3.25) BS04 MG ? GO:0002181 ... P0CX82 27827794
    101009 5lyb:N0 (3.25) BS03 MG ? GO:0002181 ... P0CX23 27827794
    101010 5lyb:N0 (3.25) BS04 MG ? GO:0002181 ... P0CX23 27827794
    101011 5lyb:N1 (3.25) BS03 MG ? GO:0002181 ... Q02753 27827794
    101012 5lyb:N3 (3.25) BS03 MG ? GO:0002181 ... P0CX41 27827794
    101013 5lyb:N5 (3.25) BS03 MG ? GO:0003735 ... P04456 27827794
    101014 5lyb:N6 (3.25) BS03 MG ? GO:0002181 ... P05743 27827794
    101015 5lyb:N8 (3.25) BS02 MG ? GO:0002181 ... P02406 27827794
    101016 5lyb:N8 (3.25) BS03 MG ? GO:0002181 ... P02406 27827794
    101017 5lyb:N8 (3.25) BS04 MG ? GO:0002181 ... P02406 27827794
    101018 5lyb:N8 (3.25) BS05 MG ? GO:0002181 ... P02406 27827794
    101019 5lyb:O1 (3.25) BS02 MG ? GO:0002181 ... P0C2H8 27827794
    101020 5lyb:O1 (3.25) BS03 MG ? GO:0002181 ... P0C2H8 27827794
    101021 5lyb:O1 (3.25) BS04 MG ? GO:0002181 ... P0C2H8 27827794
    101022 5lyb:O2 (3.25) BS02 MG ? GO:0002181 ... P38061 27827794
    101023 5lyb:O2 (3.25) BS03 MG ? GO:0002181 ... P38061 27827794
    101024 5lyb:O3 (3.25) BS02 MG ? GO:0000027 ... P05744 27827794
    101025 5lyb:O3 (3.25) BS03 MG ? GO:0000027 ... P05744 27827794
    101026 5lyb:O4 (3.25) BS02 MG ? GO:0002181 ... P87262 27827794
    101027 5lyb:O5 (3.25) BS03 MG ? GO:0000463 ... P0CX84 27827794
    101028 5lyb:O7 (3.25) BS03 MG ? GO:0000448 ... P49166 27827794
    101029 5lyb:O7 (3.25) BS04 ZN ? GO:0000448 ... P49166 27827794
    101030 5lyb:O7 (3.25) BS05 MG ? GO:0000448 ... P49166 27827794
    101031 5lyb:O7 (3.25) BS06 MG ? GO:0000448 ... P49166 27827794
    101032 5lyb:O9 (3.25) BS04 MG ? GO:0002181 ... P04650 27827794
    101033 5lyb:Q0 (3.25) BS02 MG ? GO:0003735 ... P0CH08 27827794
    101034 5lyb:Q0 (3.25) BS03 MG ? GO:0003735 ... P0CH08 27827794
    101035 5lyb:Q0 (3.25) BS04 ZN ? GO:0003735 ... P0CH08 27827794
    101036 5lyb:Q2 (3.25) BS02 ZN ? GO:0002181 ... P0CX27 27827794
    101037 5lyb:Q3 (3.25) BS02 ZN ? GO:0002181 ... P0CX25 27827794
    101038 5lyb:S8 (3.25) BS03 MG ? GO:0000462 ... P0CX39 27827794
    101039 5lyb:c8 (3.25) BS02 MG ? GO:0000054 ... P0CX55 27827794
    101040 5lyb:c9 (3.25) BS02 MG ? GO:0000028 ... P07280 27827794
    101041 5lyb:d6 (3.25) BS02 ZN ? GO:0003735 ... P39939 27827794
    101042 5lyb:d9 (3.25) BS02 MG ? GO:0002181 ... P41057 27827794
    101043 5lyb:d9 (3.25) BS03 ZN ? GO:0002181 ... P41057 27827794
    101044 5lyb:l2 (3.25) BS03 MG ? GO:0002181 ... P0CX45 27827794
    101045 5lyb:l2 (3.25) BS04 MG ? GO:0002181 ... P0CX45 27827794
    101046 5lyb:l2 (3.25) BS05 MG ? GO:0002181 ... P0CX45 27827794
    101047 5lyb:l3 (3.25) BS02 MG ? GO:0000027 ... P14126 27827794
    101048 5lyb:l3 (3.25) BS03 MG ? GO:0000027 ... P14126 27827794
    101049 5lyb:l3 (3.25) BS04 MG ? GO:0000027 ... P14126 27827794
    101050 5lyb:l3 (3.25) BS05 MG ? GO:0000027 ... P14126 27827794
    101051 5lyb:l3 (3.25) BS06 MG ? GO:0000027 ... P14126 27827794
    101052 5lyb:l3 (3.25) BS07 MG ? GO:0000027 ... P14126 27827794
    101053 5lyb:l3 (3.25) BS08 MG ? GO:0000027 ... P14126 27827794
    101054 5lyb:l3 (3.25) BS09 MG ? GO:0000027 ... P14126 27827794
    101055 5lyb:l4 (3.25) BS03 MG ? GO:0002181 ... P10664 27827794
    101056 5lyb:l5 (3.25) BS03 MG ? GO:0000027 ... P26321 27827794
    101057 5lyb:l5 (3.25) BS04 MG ? GO:0000027 ... P26321 27827794
    101058 5lyb:l5 (3.25) BS05 MG ? GO:0000027 ... P26321 27827794
    101059 5lyb:l5 (3.25) BS06 MG ? GO:0000027 ... P26321 27827794
    101060 5lyb:l5 (3.25) BS07 MG ? GO:0000027 ... P26321 27827794
    101061 5lyb:l5 (3.25) BS08 MG ? GO:0000027 ... P26321 27827794
    101062 5lyb:l7 (3.25) BS03 MG ? GO:0000463 ... P05737 27827794
    101063 5lyb:l7 (3.25) BS05 MG ? GO:0000463 ... P05737 27827794
    101064 5lyb:l7 (3.25) BS06 MG ? GO:0000463 ... P05737 27827794
    101065 5lyb:l9 (3.25) BS02 MG ? GO:0002181 ... P05738 27827794
    101066 5lyb:m3 (3.25) BS03 MG ? GO:0002181 ... Q12690 27827794
    101067 5lyb:m4 (3.25) BS02 MG ? GO:0000027 ... P36105 27827794
    101068 5lyb:m5 (3.25) BS03 MG ? GO:0002181 ... P05748 27827794
    101069 5lyb:m6 (3.25) BS02 MG ? GO:0000470 ... P26784 27827794
    101070 5lyb:m6 (3.25) BS03 MG ? GO:0000470 ... P26784 27827794
    101071 5lyb:m6 (3.25) BS04 MG ? GO:0000470 ... P26784 27827794
    101072 5lyb:m6 (3.25) BS05 MG ? GO:0000470 ... P26784 27827794
    101073 5lyb:m6 (3.25) BS06 MG ? GO:0000470 ... P26784 27827794
    101074 5lyb:m6 (3.25) BS07 MG ? GO:0000470 ... P26784 27827794
    101075 5lyb:m6 (3.25) BS08 MG ? GO:0000470 ... P26784 27827794
    101076 5lyb:m6 (3.25) BS09 MG ? GO:0000470 ... P26784 27827794
    101077 5lyb:m7 (3.25) BS03 MG ? GO:0000448 ... P05740 27827794
    101078 5lyb:m7 (3.25) BS04 MG ? GO:0000448 ... P05740 27827794
    101079 5lyb:m7 (3.25) BS05 MG ? GO:0000448 ... P05740 27827794
    101080 5lyb:m8 (3.25) BS02 MG ? GO:0002181 ... P0CX49 27827794
    101081 5lyb:m8 (3.25) BS03 MG ? GO:0002181 ... P0CX49 27827794
    101082 5lyb:m9 (3.25) BS03 MG ? GO:0002181 ... P0CX82 27827794
    101083 5lyb:m9 (3.25) BS04 MG ? GO:0002181 ... P0CX82 27827794
    101084 5lyb:n0 (3.25) BS03 MG ? GO:0002181 ... P0CX23 27827794
    101085 5lyb:n1 (3.25) BS03 MG ? GO:0002181 ... Q02753 27827794
    101086 5lyb:n1 (3.25) BS04 MG ? GO:0002181 ... Q02753 27827794
    101087 5lyb:n1 (3.25) BS05 MG ? GO:0002181 ... Q02753 27827794
    101088 5lyb:n1 (3.25) BS06 MG ? GO:0002181 ... Q02753 27827794
    101089 5lyb:n3 (3.25) BS03 MG ? GO:0002181 ... P0CX41 27827794
    101090 5lyb:n4 (3.25) BS03 MG ? N/A P04449 27827794
    101091 5lyb:n8 (3.25) BS02 MG ? GO:0002181 ... P02406 27827794
    101092 5lyb:n8 (3.25) BS03 MG ? GO:0002181 ... P02406 27827794
    101093 5lyb:n8 (3.25) BS04 MG ? GO:0002181 ... P02406 27827794
    101094 5lyb:n9 (3.25) BS02 MG ? GO:0002181 ... P05747 27827794
    101095 5lyb:o1 (3.25) BS02 MG ? GO:0002181 ... P0C2H8 27827794
    101096 5lyb:o2 (3.25) BS02 MG ? GO:0002181 ... P38061 27827794
    101097 5lyb:o2 (3.25) BS03 MG ? GO:0002181 ... P38061 27827794
    101098 5lyb:o2 (3.25) BS04 MG ? GO:0002181 ... P38061 27827794
    101099 5lyb:o3 (3.25) BS02 MG ? GO:0000027 ... P05744 27827794
    101100 5lyb:o3 (3.25) BS03 MG ? GO:0000027 ... P05744 27827794
    101101 5lyb:o3 (3.25) BS04 MG ? GO:0000027 ... P05744 27827794
    101102 5lyb:o3 (3.25) BS05 MG ? GO:0000027 ... P05744 27827794
    101103 5lyb:o4 (3.25) BS02 MG ? GO:0002181 ... P87262 27827794
    101104 5lyb:o4 (3.25) BS03 MG ? GO:0002181 ... P87262 27827794
    101105 5lyb:o6 (3.25) BS02 MG ? GO:0002181 ... P05745 27827794
    101106 5lyb:o7 (3.25) BS04 MG ? GO:0000448 ... P49166 27827794
    101107 5lyb:o7 (3.25) BS05 MG ? GO:0000448 ... P49166 27827794
    101108 5lyb:o7 (3.25) BS06 ZN ? GO:0000448 ... P49166 27827794
    101109 5lyb:o9 (3.25) BS03 MG ? GO:0002181 ... P04650 27827794
    101110 5lyb:q0 (3.25) BS02 MG ? GO:0003735 ... P0CH08 27827794
    101111 5lyb:q0 (3.25) BS03 ZN ? GO:0003735 ... P0CH08 27827794
    101112 5lyb:q2 (3.25) BS02 MG ? GO:0002181 ... P0CX27 27827794
    101113 5lyb:q2 (3.25) BS03 ZN ? GO:0002181 ... P0CX27 27827794
    101114 5lyb:q3 (3.25) BS03 ZN ? GO:0002181 ... P0CX25 27827794
    101115 5lyb:q3 (3.25) BS04 MG ? GO:0002181 ... P0CX25 27827794
    101116 5lyb:s4 (3.25) BS02 MG ? GO:0002181 ... P0CX35 27827794
    101117 5lyb:s5 (3.25) BS02 MG ? GO:0000028 ... P26783 27827794
    101118 5lyd:A (2.02) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    101119 5lyd:A (2.02) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    101120 5lyd:A (2.02) BS03 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    101121 5lyf:A (2.01) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    101122 5lyf:A (2.01) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    101123 5lyi:A (1.64) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    101124 5lyi:A (1.64) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    101125 5lyj:A (2.397) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    101126 5lyj:C (2.397) BS02 CA 3.6.5.- GO:0000226 ... P81947 N/A
    101127 5lyl:A (1.83) BS01 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    101128 5lyl:A (1.83) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27749053
    101129 5lyn:A (2.0) BS02 ZN ? N/A Q12118 29075633
    101130 5lyn:B (2.0) BS02 ZN ? N/A Q12118 29075633
    101131 5lyw:A (1.69) BS02 MN 3.4.11.18 GO:0006508 ... P50579 27998678
    101132 5lyw:A (1.69) BS03 MN 3.4.11.18 GO:0006508 ... P50579 27998678
    101133 5lyx:A (1.9) BS02 MN 3.4.11.18 GO:0006508 ... P50579 27998678
    101134 5lyx:A (1.9) BS03 MN 3.4.11.18 GO:0006508 ... P50579 27998678
    101135 5lza:4 (3.6) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    101136 5lza:6 (3.6) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    101137 5lzb:4 (5.3) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    101138 5lzb:6 (5.3) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    101139 5lzb:z (5.3) BS06 MG ? GO:0000049 ... P14081 27842381
    101140 5lzc:4 (4.8) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    101141 5lzc:6 (4.8) BS03 ZN ? GO:0002181 ... P0A7M9 27842381
    101142 5lzd:4 (3.4) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    101143 5lzd:6 (3.4) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    101144 5lze:4 (3.5) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    101145 5lze:6 (3.5) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    101146 5lzf:4 (4.6) BS02 ZN ? GO:0002181 ... P0A7Q6 27842381
    101147 5lzf:6 (4.6) BS02 ZN ? GO:0002181 ... P0A7M9 27842381
    101148 5lzl:A (3.47) BS01 ZN 4.2.1.24 GO:0004655 ... A3MWV9 28045381
    101149 5lzl:B (3.47) BS01 ZN 4.2.1.24 GO:0004655 ... A3MWV9 28045381
    101150 5lzl:D (3.47) BS01 ZN 4.2.1.24 GO:0004655 ... A3MWV9 28045381
    101151 5lzl:E (3.47) BS01 ZN 4.2.1.24 GO:0004655 ... A3MWV9 28045381
    101152 5lzl:F (3.47) BS01 ZN 4.2.1.24 GO:0004655 ... A3MWV9 28045381
    101153 5lzl:G (3.47) BS01 ZN 4.2.1.24 GO:0004655 ... A3MWV9 28045381
    101154 5lzl:I (3.47) BS01 ZN 4.2.1.24 GO:0004655 ... A3MWV9 28045381
    101155 5lzl:J (3.47) BS01 ZN 4.2.1.24 GO:0004655 ... A3MWV9 28045381
    101156 5lzl:K (3.47) BS01 ZN 4.2.1.24 GO:0004655 ... A3MWV9 28045381
    101157 5lzl:L (3.47) BS01 ZN 4.2.1.24 GO:0004655 ... A3MWV9 28045381
    101158 5lzq:A (3.495) BS01 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101159 5lzq:A (3.495) BS02 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101160 5lzq:A (3.495) BS03 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101161 5lzq:A (3.495) BS04 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101162 5lzq:A (3.495) BS05 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101163 5lzq:A (3.495) BS07 NA 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101164 5lzq:B (3.495) BS01 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101165 5lzq:B (3.495) BS02 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101166 5lzq:B (3.495) BS03 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101167 5lzq:B (3.495) BS04 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101168 5lzq:B (3.495) BS05 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101169 5lzq:B (3.495) BS07 NA 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101170 5lzr:B (4.0) BS01 MG 7.2.3.1 GO:0000287 ... Q9S5X0 27922000
    101171 5lzs:LL (3.31) BS02 MG ? GO:0003735 ... G1TRM4 27863242
    101172 5lzs:aa (3.31) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101173 5lzs:dd (3.31) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    101174 5lzs:ff (3.31) BS02 ZN ? GO:0003723 ... G1SK22 27863242
    101175 5lzs:g (3.31) BS02 ZN ? GO:0003735 ... G1TXG5 27863242
    101176 5lzs:g (3.31) BS03 MG ? GO:0003735 ... G1TXG5 27863242
    101177 5lzs:j (3.31) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    101178 5lzs:jj (3.31) BS05 MG 3.6.5.- GO:0000049 ... P68105 27863242
    101179 5lzs:m (3.31) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101180 5lzs:o (3.31) BS03 ZN ? GO:0003735 ... G1T040 27863242
    101181 5lzs:p (3.31) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    101182 5lzt:FF (3.65) BS03 MG ? GO:0000028 ... G1TFM5 27863242
    101183 5lzt:aa (3.65) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101184 5lzt:dd (3.65) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    101185 5lzt:ff (3.65) BS02 ZN ? GO:0003723 ... G1SK22 27863242
    101186 5lzt:g (3.65) BS02 ZN ? GO:0003735 ... G1TXG5 27863242
    101187 5lzt:j (3.65) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    101188 5lzt:jj (3.65) BS03 MG 3.6.5.- GO:0000082 ... P15170 27863242
    101189 5lzt:m (3.65) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101190 5lzt:o (3.65) BS04 ZN ? GO:0003735 ... G1T040 27863242
    101191 5lzt:p (3.65) BS02 ZN ? GO:0003735 ... G1SY53 27863242
    101192 5lzu:FF (3.75) BS03 MG ? GO:0000028 ... G1TFM5 27863242
    101193 5lzu:aa (3.75) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101194 5lzu:dd (3.75) BS02 ZN ? GO:0003735 ... G1U7M4 27863242
    101195 5lzu:ff (3.75) BS02 ZN ? GO:0003723 ... G1SK22 27863242
    101196 5lzu:g (3.75) BS02 ZN ? GO:0003735 ... G1TXG5 27863242
    101197 5lzu:g (3.75) BS03 MG ? GO:0003735 ... G1TXG5 27863242
    101198 5lzu:j (3.75) BS03 ZN ? GO:0003723 ... U3KPD5 27863242
    101199 5lzu:m (3.75) BS02 ZN N/A GO:0003735 ... N/A 27863242
    101200 5lzu:o (3.75) BS04 ZN ? GO:0003735 ... G1T040 27863242
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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