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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    100601 5lmk:B (2.4) BS01 MG ? GO:0016538 ... P20248 28039837
    100602 5lmm:L (1.2) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 N/A
    100603 5lmm:M (1.2) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 N/A
    100604 5lmn:D (3.55) BS02 ZN ? GO:0003723 ... P80373 27662086
    100605 5lmn:N (3.55) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    100606 5lmo:D (4.3) BS02 ZN ? GO:0003723 ... P80373 27662086
    100607 5lmo:N (4.3) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    100608 5lmp:D (5.35) BS02 ZN ? GO:0003723 ... P80373 27662086
    100609 5lmp:N (5.35) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    100610 5lmq:D (4.2) BS02 ZN ? GO:0003723 ... P80373 27662086
    100611 5lmq:N (4.2) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    100612 5lmr:D (4.45) BS02 ZN ? GO:0003723 ... P80373 27662086
    100613 5lmr:N (4.45) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    100614 5lms:D (5.1) BS02 ZN ? GO:0003723 ... P80373 27662086
    100615 5lms:N (5.1) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    100616 5lmt:D (4.15) BS02 ZN ? GO:0003723 ... P80373 27662086
    100617 5lmt:N (4.15) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    100618 5lmu:D (4.0) BS02 ZN ? GO:0003723 ... P80373 27662086
    100619 5lmu:N (4.0) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    100620 5lmv:D (4.9) BS02 ZN ? GO:0003723 ... P80373 27662086
    100621 5lmv:N (4.9) BS02 ZN ? GO:0003735 ... P0DOY6 27662086
    100622 5lmv:W (4.9) BS02 MG ? GO:0003723 ... Q5SHR1 27662086
    100623 5lmx:A (4.9) BS01 ZN 2.7.7.6 GO:0000428 ... P10964 28262097
    100624 5lmx:A (4.9) BS02 ZN 2.7.7.6 GO:0000428 ... P10964 28262097
    100625 5lmx:B (4.9) BS01 ZN 2.7.7.6 GO:0000428 ... P22138 28262097
    100626 5lmx:I (4.9) BS01 ZN ? GO:0000122 ... P32529 28262097
    100627 5lmx:J (4.9) BS01 ZN ? GO:0000428 ... P22139 28262097
    100628 5lmx:L (4.9) BS01 ZN ? GO:0000428 ... P40422 28262097
    100629 5lnk:b (3.9) BS01 ZN ? GO:0006120 ... P23934 27595392
    100630 5lo8:A (2.5) BS01 CA ? GO:0016020 ... P47709 28634303
    100631 5lo8:A (2.5) BS02 CA ? GO:0016020 ... P47709 28634303
    100632 5lo8:B (2.5) BS02 CA ? GO:0016020 ... P47709 28634303
    100633 5lo8:B (2.5) BS03 CA ? GO:0016020 ... P47709 28634303
    100634 5lob:A (3.3) BS01 CA ? GO:0016020 ... P47709 28634303
    100635 5lob:A (3.3) BS02 CA ? GO:0016020 ... P47709 28634303
    100636 5lob:B (3.3) BS01 CA ? GO:0016020 ... P47709 28634303
    100637 5lob:B (3.3) BS02 CA ? GO:0016020 ... P47709 28634303
    100638 5lob:C (3.3) BS01 CA ? GO:0016020 ... P47709 28634303
    100639 5lob:C (3.3) BS02 CA ? GO:0016020 ... P47709 28634303
    100640 5log:A (2.01) BS02 MG ? GO:0008168 ... Q50859 27990630
    100641 5log:B (2.01) BS01 MG ? GO:0008168 ... Q50859 27990630
    100642 5lop:A (3.5) BS01 MG ? GO:0000184 ... Q6CIU1 27694841
    100643 5lop:A (3.5) BS02 MG ? GO:0000184 ... Q6CIU1 27694841
    100644 5los:A (2.0) BS01 ZN ? GO:0046872 ... G4TKU4 32285459
    100645 5lov:A (2.4) BS02 MG 3.6.5.- GO:0000226 ... P81947 27856798
    100646 5lov:A (2.4) BS03 CA 3.6.5.- GO:0000226 ... P81947 27856798
    100647 5low:A (2.8) BS01 CA ? GO:0016020 ... P47709 28634303
    100648 5low:A (2.8) BS02 CA ? GO:0016020 ... P47709 28634303
    100649 5low:B (2.8) BS01 CA ? GO:0016020 ... P47709 28634303
    100650 5low:B (2.8) BS02 CA ? GO:0016020 ... P47709 28634303
    100651 5low:C (2.8) BS01 CA ? GO:0016020 ... P47709 28634303
    100652 5low:C (2.8) BS02 CA ? GO:0016020 ... P47709 28634303
    100653 5low:H (2.8) BS01 CA ? GO:0016020 ... P47709 28634303
    100654 5low:H (2.8) BS02 CA ? GO:0016020 ... P47709 28634303
    100655 5low:I (2.8) BS01 CA ? GO:0016020 ... P47709 28634303
    100656 5low:I (2.8) BS02 CA ? GO:0016020 ... P47709 28634303
    100657 5low:J (2.8) BS01 CA ? GO:0016020 ... P47709 28634303
    100658 5low:J (2.8) BS02 CA ? GO:0016020 ... P47709 28634303
    100659 5lp6:A (2.9) BS02 MG 3.6.5.- GO:0000226 ... P81947 27613098
    100660 5lp6:C (2.9) BS02 CA 3.6.5.- GO:0000226 ... P81947 27613098
    100661 5lpa:A (1.4) BS03 CA 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    100662 5lpa:A (1.4) BS04 CA 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    100663 5lpa:B (1.4) BS03 CA 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    100664 5lpa:B (1.4) BS04 CA 2.7.7.47 GO:0005524 ... Q8ZPX9 29871922
    100665 5lpe:A (2.65) BS01 ZN 3.4.21.- GO:0004252 ... O43240 27611765
    100666 5lpe:B (2.65) BS01 ZN 3.4.21.- GO:0004252 ... O43240 27611765
    100667 5lpg:A (1.7) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 27530327
    100668 5lpg:B (1.7) BS01 MG 3.6.1.9 GO:0000278 ... Q9NV35 27530327
    100669 5lpg:B (1.7) BS02 MG 3.6.1.9 GO:0000278 ... Q9NV35 27530327
    100670 5lpi:A (1.8) BS01 ZN ? N/A O60308 28017521
    100671 5lpi:A (1.8) BS02 ZN ? N/A O60308 28017521
    100672 5lpi:A (1.8) BS03 ZN ? N/A O60308 28017521
    100673 5lpi:A (1.8) BS04 ZN ? N/A O60308 28017521
    100674 5lpi:B (1.8) BS01 ZN ? N/A O60308 28017521
    100675 5lpi:B (1.8) BS02 ZN ? N/A O60308 28017521
    100676 5lpi:B (1.8) BS03 ZN ? N/A O60308 28017521
    100677 5lpi:B (1.8) BS04 ZN ? N/A O60308 28017521
    100678 5lpi:C (1.8) BS01 ZN ? N/A O60308 28017521
    100679 5lpi:C (1.8) BS02 ZN ? N/A O60308 28017521
    100680 5lpi:C (1.8) BS03 ZN ? N/A O60308 28017521
    100681 5lpi:C (1.8) BS04 ZN ? N/A O60308 28017521
    100682 5lpi:D (1.8) BS01 ZN ? N/A O60308 28017521
    100683 5lpi:D (1.8) BS02 ZN ? N/A O60308 28017521
    100684 5lpi:D (1.8) BS03 ZN ? N/A O60308 28017521
    100685 5lpi:D (1.8) BS04 ZN ? N/A O60308 28017521
    100686 5lpn:A (2.8) BS01 MG 3.6.5.2 GO:0003924 ... P61026 27552051
    100687 5lpn:C (2.8) BS01 MG 3.6.5.2 GO:0003924 ... P61026 27552051
    100688 5lpo:A (1.42) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    100689 5lpp:A (1.99) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    100690 5lpq:A (2.52) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    100691 5lpq:B (2.52) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    100692 5lps:A (1.27) BS02 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    100693 5lpt:A (2.36) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    100694 5lpt:B (2.36) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 N/A
    100695 5lpu:A (2.1) BS01 CA ? GO:0001525 ... P07355 28669632
    100696 5lpu:A (2.1) BS02 CA ? GO:0001525 ... P07355 28669632
    100697 5lpu:A (2.1) BS03 CA ? GO:0001525 ... P07355 28669632
    100698 5lpu:A (2.1) BS04 CA ? GO:0001525 ... P07355 28669632
    100699 5lpu:A (2.1) BS05 CA ? GO:0001525 ... P07355 28669632
    100700 5lpu:B (2.1) BS01 CA ? GO:0001525 ... P07355 28669632
    100701 5lpu:B (2.1) BS02 CA ? GO:0001525 ... P07355 28669632
    100702 5lpu:B (2.1) BS03 CA ? GO:0001525 ... P07355 28669632
    100703 5lpu:B (2.1) BS04 CA ? GO:0001525 ... P07355 28669632
    100704 5lpu:B (2.1) BS05 CA ? GO:0001525 ... P07355 28669632
    100705 5lpu:C (2.1) BS01 CA ? GO:0001837 ... P26447 28669632
    100706 5lpu:C (2.1) BS02 CA ? GO:0001837 ... P26447 28669632
    100707 5lpu:D (2.1) BS01 CA ? GO:0001837 ... P26447 28669632
    100708 5lpu:D (2.1) BS02 CA ? GO:0001837 ... P26447 28669632
    100709 5lpv:A (2.7) BS02 MN 2.7.10.1
    2.7.11.1    		 GO:0004672 ... O22476 N/A
    100710 5lpx:A (1.9) BS01 CA ? GO:0001525 ... P07355 28669632
    100711 5lpx:A (1.9) BS02 CA ? GO:0001525 ... P07355 28669632
    100712 5lpx:A (1.9) BS03 CA ? GO:0001525 ... P07355 28669632
    100713 5lpx:A (1.9) BS04 CA ? GO:0001525 ... P07355 28669632
    100714 5lpx:A (1.9) BS05 CA ? GO:0001525 ... P07355 28669632
    100715 5lq0:A (2.9) BS01 CA ? GO:0001525 ... P07355 28669632
    100716 5lq0:A (2.9) BS02 CA ? GO:0001525 ... P07355 28669632
    100717 5lq0:A (2.9) BS03 CA ? GO:0001525 ... P07355 28669632
    100718 5lq0:B (2.9) BS01 CA ? GO:0001525 ... P07355 28669632
    100719 5lq0:B (2.9) BS02 CA ? GO:0001525 ... P07355 28669632
    100720 5lq0:B (2.9) BS03 CA ? GO:0001525 ... P07355 28669632
    100721 5lq1:A (1.41) BS01 MG ? GO:0043190 ... Q119I9 29170493
    100722 5lq1:B (1.41) BS01 MG ? GO:0043190 ... Q119I9 29170493
    100723 5lq2:A (3.4) BS01 CA ? GO:0001525 ... P07355 28669632
    100724 5lq2:A (3.4) BS02 CA ? GO:0001525 ... P07355 28669632
    100725 5lq2:A (3.4) BS03 CA ? GO:0001525 ... P07355 28669632
    100726 5lq2:A (3.4) BS04 CA ? GO:0001525 ... P07355 28669632
    100727 5lq2:A (3.4) BS05 CA ? GO:0001525 ... P07355 28669632
    100728 5lq2:B (3.4) BS01 CA ? GO:0001525 ... P07355 28669632
    100729 5lq2:B (3.4) BS02 CA ? GO:0001525 ... P07355 28669632
    100730 5lq2:B (3.4) BS03 CA ? GO:0001525 ... P07355 28669632
    100731 5lq2:B (3.4) BS04 CA ? GO:0001525 ... P07355 28669632
    100732 5lqa:A (1.2) BS02 MG 2.1.1.6 GO:0000287 ... P22734 N/A
    100733 5lqc:A (1.903) BS02 MG 2.1.1.6 GO:0000287 ... P22734 N/A
    100734 5lqk:A (2.24) BS01 MG 2.1.1.6 GO:0000287 ... P22734 N/A
    100735 5lqq:A (2.4) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 27982588
    100736 5lqq:A (2.4) BS03 ZN 3.1.4.39 GO:0001953 ... Q64610 27982588
    100737 5lqq:A (2.4) BS04 CA 3.1.4.39 GO:0001953 ... Q64610 27982588
    100738 5lqr:A (1.5) BS01 MG 2.1.1.6 GO:0000287 ... P22734 N/A
    100739 5lqu:A (1.8) BS02 MG 2.1.1.6 GO:0000287 ... P22734 N/A
    100740 5lqu:B (1.8) BS02 MG 2.1.1.6 GO:0000287 ... P22734 N/A
    100741 5lrg:A (2.02) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27604544
    100742 5lrg:B (2.02) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27604544
    100743 5lrg:C (2.02) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27604544
    100744 5lri:L (2.4) BS04 FE ? GO:0009772 ... Q3J1A5 27687473
    100745 5lri:M (2.4) BS02 FE ? GO:0009772 ... Q3J1A6 27687473
    100746 5lrj:A (2.2) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27604544
    100747 5lrj:B (2.2) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27604544
    100748 5lrj:C (2.2) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27604544
    100749 5lrk:A (2.3) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27604544
    100750 5lrk:B (2.3) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27604544
    100751 5lrk:C (2.3) BS02 ZN 3.4.17.2 GO:0004181 ... P09955 27604544
    100752 5lrm:A (1.75) BS01 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 28059088
    100753 5lrm:A (1.75) BS02 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 28059088
    100754 5lrn:A (1.55) BS01 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 28059088
    100755 5lrn:B (1.55) BS01 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 28059088
    100756 5lrp:A (1.941) BS01 ZN 3.1.13.- N/A Q5S581 28777079
    100757 5lrp:A (1.941) BS02 MG 3.1.13.- N/A Q5S581 28777079
    100758 5lrp:B (1.941) BS01 ZN 3.1.13.- N/A Q5S581 28777079
    100759 5lrp:B (1.941) BS02 MG 3.1.13.- N/A Q5S581 28777079
    100760 5lrt:A (1.85) BS02 MG 3.4.-.- GO:0005524 ... A0LU48 28119453
    100761 5lrt:A (1.85) BS03 MG 3.4.-.- GO:0005524 ... A0LU48 28119453
    100762 5lrt:A (1.85) BS04 MG 3.4.-.- GO:0005524 ... A0LU48 28119453
    100763 5lry:L (1.4) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    100764 5lry:M (1.4) BS02 MG 1.12.99.6 GO:0005515 ... P0ACD8 30070475
    100765 5ls3:A (1.754) BS01 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 28252254
    100766 5ls3:A (1.754) BS02 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 28252254
    100767 5ls3:A (1.754) BS03 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 28252254
    100768 5ls3:B (1.754) BS01 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 28252254
    100769 5ls3:B (1.754) BS02 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 28252254
    100770 5ls3:B (1.754) BS03 ZN 3.5.2.6 GO:0008270 ... Q8G9Q0 28252254
    100771 5ls4:A (1.469) BS01 CA 3.1.13.- N/A Q5S581 28777079
    100772 5ls4:A (1.469) BS02 ZN 3.1.13.- N/A Q5S581 28777079
    100773 5ls6:A (3.47) BS02 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100774 5ls6:A (3.47) BS03 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100775 5ls6:A (3.47) BS04 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100776 5ls6:A (3.47) BS05 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100777 5ls6:A (3.47) BS06 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100778 5ls6:A (3.47) BS07 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100779 5ls6:A (3.47) BS08 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100780 5ls6:A (3.47) BS09 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100781 5ls6:D (3.47) BS01 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100782 5ls6:D (3.47) BS02 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100783 5ls6:D (3.47) BS03 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100784 5ls6:D (3.47) BS04 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100785 5ls6:D (3.47) BS05 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100786 5ls6:D (3.47) BS06 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100787 5ls6:D (3.47) BS07 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100788 5ls6:D (3.47) BS08 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100789 5ls6:G (3.47) BS02 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100790 5ls6:G (3.47) BS03 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100791 5ls6:G (3.47) BS04 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100792 5ls6:G (3.47) BS05 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100793 5ls6:G (3.47) BS06 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100794 5ls6:G (3.47) BS07 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100795 5ls6:G (3.47) BS08 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100796 5ls6:G (3.47) BS09 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100797 5ls6:J (3.47) BS02 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100798 5ls6:J (3.47) BS03 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100799 5ls6:J (3.47) BS04 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    100800 5ls6:J (3.47) BS05 ZN 2.1.1.356 GO:0006338 ... Q15910 27739677
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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