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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    100401 5lf3:I (2.1) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100402 5lf3:K (2.1) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100403 5lf3:V (2.1) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100404 5lf3:W (2.1) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100405 5lf3:Y (2.1) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100406 5lf4:H (1.99) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100407 5lf4:I (1.99) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100408 5lf4:K (1.99) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100409 5lf4:V (1.99) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100410 5lf4:W (1.99) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100411 5lf4:Y (1.99) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100412 5lf6:H (2.07) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100413 5lf6:I (2.07) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100414 5lf6:K (2.07) BS02 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100415 5lf6:V (2.07) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100416 5lf6:W (2.07) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100417 5lf6:Y (2.07) BS02 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100418 5lf7:H (2.0) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100419 5lf7:I (2.0) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100420 5lf7:K (2.0) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100421 5lf7:V (2.0) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100422 5lf7:W (2.0) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100423 5lf7:Y (2.0) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100424 5lfc:A (3.2) BS01 CA 2.4.1.5 GO:0009250 ... A0A2H4A2M1 N/A
    100425 5lfc:B (3.2) BS01 CA 2.4.1.5 GO:0009250 ... A0A2H4A2M1 N/A
    100426 5lg0:A (-1.00) BS01 ZN 2.3.2.27 GO:0061630 ... Q6ZNA4 28647409
    100427 5lg0:A (-1.00) BS02 ZN 2.3.2.27 GO:0061630 ... Q6ZNA4 28647409
    100428 5lg2:A (2.22) BS01 FE ? GO:0005506 ... P02791 28202724
    100429 5lg2:A (2.22) BS02 FE ? GO:0005506 ... P02791 28202724
    100430 5lg2:A (2.22) BS03 FE ? GO:0005506 ... P02791 28202724
    100431 5lg2:A (2.22) BS04 FE ? GO:0005506 ... P02791 28202724
    100432 5lg6:A (2.5) BS01 ZN 3.4.11.2 GO:0001525 ... P15145 28393915
    100433 5lg6:B (2.5) BS01 ZN 3.4.11.2 GO:0001525 ... P15145 28393915
    100434 5lg7:A (-1.00) BS01 ZN 2.3.2.27 GO:0061630 ... Q6ZNA4 28647409
    100435 5lg7:A (-1.00) BS02 ZN 2.3.2.27 GO:0061630 ... Q6ZNA4 28647409
    100436 5lg8:A (1.98) BS01 FE ? GO:0005506 ... P02792 28202724
    100437 5lg8:A (1.98) BS02 FE ? GO:0005506 ... P02792 28202724
    100438 5lg8:A (1.98) BS03 FE ? GO:0005506 ... P02792 28202724
    100439 5lg8:A (1.98) BS04 FE ? GO:0005506 ... P02792 28202724
    100440 5lgo:A (1.12) BS01 CA 3.4.21.4 GO:0004175 ... P00760 27476144
    100441 5lgy:A (2.92) BS03 ZN ? GO:0000976 ... P04637 27338200
    100442 5lgy:B (2.92) BS03 ZN ? GO:0000976 ... P04637 27338200
    100443 5lgy:C (2.92) BS03 ZN ? GO:0000976 ... P04637 27338200
    100444 5lgy:D (2.92) BS03 ZN ? GO:0000976 ... P04637 27338200
    100445 5lh4:A (1.37) BS01 CA 3.4.21.4 GO:0004175 ... P00760 27476144
    100446 5lh8:A (1.54) BS01 CA 3.4.21.4 GO:0004175 ... P00760 27476144
    100447 5lhd:A (2.6) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 28393915
    100448 5lhd:B (2.6) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 28393915
    100449 5lhd:C (2.6) BS01 ZN 3.4.11.2 GO:0001525 ... P15144 28393915
    100450 5lhd:D (2.6) BS02 ZN 3.4.11.2 GO:0001525 ... P15144 28393915
    100451 5lhk:A (2.32) BS01 MN 3.4.11.-
    3.4.11.1    		 GO:0004177 ... K4MHW2 27653442
    100452 5lhk:A (2.32) BS02 MN 3.4.11.-
    3.4.11.1    		 GO:0004177 ... K4MHW2 27653442
    100453 5lhl:A (2.0) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100454 5lhl:A (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100455 5lhl:A (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100456 5lhl:B (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100457 5lhl:B (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100458 5lhl:B (2.0) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100459 5lhl:B (2.0) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100460 5lhl:C (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100461 5lhl:C (2.0) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100462 5lhl:C (2.0) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100463 5lhl:D (2.0) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100464 5lhl:D (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100465 5lhl:D (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100466 5lhl:E (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100467 5lhl:E (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100468 5lhl:E (2.0) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100469 5lhl:F (2.0) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100470 5lhl:F (2.0) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100471 5lhl:F (2.0) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 N/A
    100472 5lhm:A (1.31) BS01 MG ? GO:0008168 ... Q50859 27990630
    100473 5lhm:A (1.31) BS02 MG ? GO:0008168 ... Q50859 27990630
    100474 5li0:8 (3.8) BS02 ZN ? GO:0003735 ... Q2FW29 27906650
    100475 5li1:A (2.0) BS03 MG 2.7.11.13 GO:0004672 ... P41743 27554858
    100476 5li1:A (2.0) BS04 MG 2.7.11.13 GO:0004672 ... P41743 27554858
    100477 5li3:A (2.4) BS01 ZN 3.5.1.- GO:0004407 ... Q9HXM1 27756124
    100478 5li3:B (2.4) BS02 ZN 3.5.1.- GO:0004407 ... Q9HXM1 27756124
    100479 5lia:A (1.92) BS03 ZN 3.1.4.39 GO:0003676 ... Q9R1E6 27780639
    100480 5lia:A (1.92) BS04 ZN 3.1.4.39 GO:0003676 ... Q9R1E6 27780639
    100481 5lia:A (1.92) BS05 CA 3.1.4.39 GO:0003676 ... Q9R1E6 27780639
    100482 5lif:E (1.31) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27959500
    100483 5lif:E (1.31) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    100484 5lif:E (1.31) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    100485 5lif:E (1.31) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    100486 5lif:E (1.31) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27959500
    100487 5lih:A (3.25) BS04 MN 2.7.11.13 GO:0004672 ... P41743 27554858
    100488 5lih:A (3.25) BS05 MN 2.7.11.13 GO:0004672 ... P41743 27554858
    100489 5lih:B (3.25) BS04 MN 2.7.11.13 GO:0004672 ... P41743 27554858
    100490 5lil:A (3.35) BS02 MG 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    100491 5lil:B (3.35) BS03 MG 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    100492 5lip:A (2.9) BS01 CA 3.1.1.3 GO:0004806 ... P22088 9660188
    100493 5lj3:D (3.8) BS05 ZN ? GO:0000349 ... P28320 27459055
    100494 5lj3:L (3.8) BS03 ZN ? GO:0000282 ... P25337 27459055
    100495 5lj3:L (3.8) BS04 ZN ? GO:0000282 ... P25337 27459055
    100496 5lj3:L (3.8) BS05 ZN ? GO:0000282 ... P25337 27459055
    100497 5lj3:M (3.8) BS02 ZN ? GO:0000387 ... Q12046 27459055
    100498 5lj3:N (3.8) BS02 ZN ? GO:0000398 ... P38241 27459055
    100499 5lj3:N (3.8) BS03 ZN ? GO:0000398 ... P38241 27459055
    100500 5lj5:D (10.0) BS05 ZN ? GO:0000349 ... P28320 27459055
    100501 5lj5:L (10.0) BS03 ZN ? GO:0000282 ... P25337 27459055
    100502 5lj5:L (10.0) BS04 ZN ? GO:0000282 ... P25337 27459055
    100503 5lj5:L (10.0) BS05 ZN ? GO:0000282 ... P25337 27459055
    100504 5lj5:M (10.0) BS02 ZN ? GO:0000387 ... Q12046 27459055
    100505 5lj5:N (10.0) BS02 ZN ? GO:0000398 ... P38241 27459055
    100506 5lj5:N (10.0) BS03 ZN ? GO:0000398 ... P38241 27459055
    100507 5lj6:A (3.9) BS02 MG 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    100508 5lj7:A (3.25) BS02 MG 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    100509 5lj7:B (3.25) BS03 MG 7.6.2.- GO:0005524 ... Q2EHL8 29109272
    100510 5lji:A (2.07) BS02 CA ? GO:0000166 ... Q8DPG4 27649488
    100511 5lji:C (2.07) BS02 CA ? GO:0000166 ... Q8DPG4 27649488
    100512 5lji:C (2.07) BS03 CA ? GO:0000166 ... Q8DPG4 27649488
    100513 5ljq:A (1.05) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27933963
    100514 5ljt:A (1.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27933963
    100515 5lk5:A (2.3) BS01 CA ? GO:0005509 ... P27797 27840680
    100516 5lk5:B (2.3) BS01 CA ? GO:0005509 ... P27797 27840680
    100517 5lk5:C (2.3) BS01 CA ? GO:0005509 ... P27797 27840680
    100518 5lk5:D (2.3) BS01 CA ? GO:0005509 ... P27797 27840680
    100519 5lk5:E (2.3) BS01 CA ? GO:0005509 ... P27797 27840680
    100520 5lk5:F (2.3) BS01 CA ? GO:0005509 ... P27797 27840680
    100521 5lk5:G (2.3) BS01 CA ? GO:0005509 ... P27797 27840680
    100522 5lk5:H (2.3) BS01 CA ? GO:0005509 ... P27797 27840680
    100523 5lk5:I (2.3) BS01 CA ? GO:0005509 ... P27797 27840680
    100524 5lk5:J (2.3) BS01 CA ? GO:0005509 ... P27797 27840680
    100525 5lkg:A (1.51) BS03 MG ? N/A A0A0E4B1P1 28505592
    100526 5lkk:B (1.49) BS03 MG ? N/A A0A0E4B1P1 N/A
    100527 5lkm:A (3.5) BS02 MG 3.6.4.- GO:0000725 ... Q8DRP0 28561029
    100528 5lkm:B (3.5) BS02 MG 3.6.4.- GO:0000725 ... Q8DRP0 28561029
    100529 5lkm:C (3.5) BS02 MG 3.6.4.- GO:0000725 ... Q8DRP0 28561029
    100530 5lks:LP (3.6) BS03 MG ? GO:0002181 ... P18621 27665925
    100531 5lks:Lg (3.6) BS02 ZN ? GO:0002181 ... P49207 27665925
    100532 5lks:Lj (3.6) BS03 ZN ? GO:0002181 ... P61927 27665925
    100533 5lks:Lm (3.6) BS02 ZN ? GO:0002181 ... P62987 27665925
    100534 5lks:Lo (3.6) BS02 ZN ? GO:0002181 ... P83881 27665925
    100535 5lks:Lp (3.6) BS02 ZN ? GO:0002181 ... P61513 27665925
    100536 5lks:Sa (3.6) BS02 ZN ? GO:0002181 ... P62854 27665925
    100537 5lks:Sd (3.6) BS02 ZN ? GO:0002181 ... P62273 27665925
    100538 5lkt:A (2.04) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100539 5lkt:A (2.04) BS02 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100540 5lkt:A (2.04) BS03 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100541 5lkt:A (2.04) BS04 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100542 5lku:A (3.5) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100543 5lku:A (3.5) BS02 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100544 5lku:A (3.5) BS03 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100545 5lkx:A (2.52) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100546 5lkx:A (2.52) BS02 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100547 5lkx:A (2.52) BS03 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100548 5lkx:A (2.52) BS04 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100549 5lkz:A (2.5) BS01 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100550 5lkz:A (2.5) BS02 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100551 5lkz:A (2.5) BS03 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100552 5lkz:A (2.5) BS04 ZN 2.3.1.-
    2.3.1.48    		 GO:0004402 ... Q09472 27820805
    100553 5ll4:A (1.12) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    100554 5ll4:B (1.12) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    100555 5ll5:A (1.42) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    100556 5ll5:B (1.42) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    100557 5ll5:C (1.42) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    100558 5ll5:D (1.42) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    100559 5ll6:h (3.9) BS05 MG ? GO:0000054 ... Q03195 28368393
    100560 5ll8:A (1.03) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 N/A
    100561 5ll9:A (1.45) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    100562 5ll9:B (1.45) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    100563 5ll9:C (1.45) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    100564 5ll9:D (1.45) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 N/A
    100565 5lla:A (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A
    100566 5lla:B (1.5) BS01 ZN 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A
    100567 5llb:A (1.92) BS01 MG 2.7.4.- GO:0006793 ... Q5NEQ5 29531036
    100568 5llb:B (1.92) BS01 MG 2.7.4.- GO:0006793 ... Q5NEQ5 29531036
    100569 5llb:C (1.92) BS01 MG 2.7.4.- GO:0006793 ... Q5NEQ5 29531036
    100570 5llb:D (1.92) BS01 MG 2.7.4.- GO:0006793 ... Q5NEQ5 29531036
    100571 5llc:A (1.1) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29503769
    100572 5lld:A (2.651) BS01 FE ? GO:0005506 ... Q46877 27725182
    100573 5lld:A (2.651) BS02 FE ? GO:0005506 ... Q46877 27725182
    100574 5lle:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29503769
    100575 5llg:A (1.12) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29503769
    100576 5llh:A (1.9) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 29503769
    100577 5lln:A (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A
    100578 5lln:B (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A
    100579 5llo:A (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    100580 5llo:B (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    100581 5llo:C (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    100582 5llo:D (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    100583 5llp:A (1.48) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    100584 5llp:B (1.48) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    100585 5llp:C (1.48) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    100586 5llp:D (1.48) BS01 ZN 4.2.1.1 GO:0004089 ... O43570 29503769
    100587 5llx:A (2.8) BS03 MG 2.7.7.65 GO:0005525 ... F7RW09 28275738
    100588 5llx:B (2.8) BS03 MG 2.7.7.65 GO:0005525 ... F7RW09 28275738
    100589 5lm6:A (1.17) BS01 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100590 5lm6:A (1.17) BS02 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100591 5lm6:B (1.17) BS01 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100592 5lm6:B (1.17) BS02 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100593 5lm8:A (1.7) BS01 CU 1.10.3.2 GO:0005507 ... A2QS62 N/A
    100594 5lm8:A (1.7) BS02 CU 1.10.3.2 GO:0005507 ... A2QS62 N/A
    100595 5lm8:A (1.7) BS03 CU 1.10.3.2 GO:0005507 ... A2QS62 N/A
    100596 5lm8:A (1.7) BS04 CU 1.10.3.2 GO:0005507 ... A2QS62 N/A
    100597 5lm9:A (2.143) BS01 MG ? GO:0000166 ... P0AFF6 28452979
    100598 5lmd:A (1.7) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 27722534
    100599 5lme:A (-1.00) BS01 ZN ? N/A Q27026 29385532
    100600 5lme:A (-1.00) BS02 ZN ? N/A Q27026 29385532
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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