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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    100201 5l9i:A (1.9) BS03 CA N/A N/A N/A 27609514
    100202 5l9i:B (1.9) BS02 CA N/A N/A N/A 27609514
    100203 5l9l:A (1.8) BS02 CA N/A N/A N/A 27609514
    100204 5l9l:A (1.8) BS03 CA N/A N/A N/A 27609514
    100205 5l9l:A (1.8) BS04 CA N/A N/A N/A 27609514
    100206 5l9l:A (1.8) BS05 CA N/A N/A N/A 27609514
    100207 5l9l:B (1.8) BS02 CA N/A N/A N/A 27609514
    100208 5l9l:B (1.8) BS03 CA N/A N/A N/A 27609514
    100209 5l9n:A (1.901) BS02 MG ? GO:0000166 ... P0A9Z1 28345298
    100210 5l9o:B (1.84) BS02 CA ? GO:0015276 ... Q7D447 27609514
    100211 5l9r:A (1.81) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100212 5l9v:A (1.829) BS02 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100213 5l9v:B (1.829) BS03 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100214 5l9x:A (1.9) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    100215 5l9x:A (1.9) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    100216 5l9x:A (1.9) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    100217 5la0:A (1.65) BS01 CA ? GO:0000272 ... A3DHG6 27531750
    100218 5la0:A (1.65) BS02 CA ? GO:0000272 ... A3DHG6 27531750
    100219 5la0:A (1.65) BS03 CA ? GO:0000272 ... A3DHG6 27531750
    100220 5la1:A (1.9) BS03 CA ? GO:0000272 ... A3DHG6 27531750
    100221 5la1:A (1.9) BS04 CA ? GO:0000272 ... A3DHG6 27531750
    100222 5la1:A (1.9) BS05 CA ? GO:0000272 ... A3DHG6 27531750
    100223 5la2:A (1.65) BS05 CA ? GO:0000272 ... A3DHG6 27531750
    100224 5la2:A (1.65) BS06 CA ? GO:0000272 ... A3DHG6 27531750
    100225 5la2:A (1.65) BS07 CA ? GO:0000272 ... A3DHG6 27531750
    100226 5la2:B (1.65) BS05 CA ? GO:0000272 ... A3DHG6 27531750
    100227 5la2:B (1.65) BS06 CA ? GO:0000272 ... A3DHG6 27531750
    100228 5la2:B (1.65) BS07 CA ? GO:0000272 ... A3DHG6 27531750
    100229 5la6:A (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 27395016
    100230 5la6:C (2.1) BS02 CA 3.6.5.- GO:0000226 ... P81947 27395016
    100231 5la9:A (2.813) BS03 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100232 5la9:B (2.813) BS03 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100233 5lab:A (1.34) BS01 ZN 3.4.24.65 GO:0004222 ... P39900 N/A
    100234 5lab:A (1.34) BS02 ZN 3.4.24.65 GO:0004222 ... P39900 N/A
    100235 5lab:A (1.34) BS03 CA 3.4.24.65 GO:0004222 ... P39900 N/A
    100236 5lab:A (1.34) BS04 CA 3.4.24.65 GO:0004222 ... P39900 N/A
    100237 5lab:A (1.34) BS05 CA 3.4.24.65 GO:0004222 ... P39900 N/A
    100238 5lai:G (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P21243 27709817
    100239 5lai:I (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P25451 27709817
    100240 5lai:I (2.5) BS02 MG 3.4.25.1 GO:0000502 ... P25451 27709817
    100241 5lai:K (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 27709817
    100242 5lai:N (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P38624 27709817
    100243 5lai:V (2.5) BS01 MG 3.4.25.1 GO:0004298 ... P25043 27709817
    100244 5lai:Y (2.5) BS02 MG 3.4.25.1 GO:0004298 ... P30656 27709817
    100245 5lai:Z (2.5) BS01 MG 3.4.25.1 GO:0000502 ... P23724 27709817
    100246 5laj:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 27709817
    100247 5laj:I (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P25451 27709817
    100248 5laj:K (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 27709817
    100249 5laj:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 27709817
    100250 5laj:V (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043 27709817
    100251 5laj:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 27709817
    100252 5laj:Z (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P23724 27709817
    100253 5lap:A (1.42) BS01 ZN ? GO:0000976 ... P04637 27551077
    100254 5lap:B (1.42) BS01 ZN ? GO:0000976 ... P04637 27551077
    100255 5laq:A (2.4) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 29672041
    100256 5las:A (2.1) BS03 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100257 5las:B (2.1) BS03 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100258 5lat:A (1.9) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100259 5lb3:B (1.8) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 28100692
    100260 5lb3:E (1.8) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 28100692
    100261 5lb5:A (2.0) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 28100692
    100262 5lb5:B (2.0) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 28100692
    100263 5lb5:C (2.0) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 28100692
    100264 5lb5:D (2.0) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 28100692
    100265 5lb6:A (1.7) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100266 5lb8:A (3.4) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 28100692
    100267 5lb8:D (3.4) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 28100692
    100268 5lba:A (2.5) BS02 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    100269 5lba:B (2.5) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    100270 5lba:C (2.5) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    100271 5lba:D (2.5) BS01 ZN 5.6.2.4 GO:0003676 ... O94762 N/A
    100272 5lbb:A (1.7) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100273 5lbc:A (1.816) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100274 5lbe:A (1.749) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100275 5lbf:A (1.8995) BS01 MN 1.14.11.29 GO:0005506 ... Q9GZT9 27561929
    100276 5lbh:A (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100277 5lbh:A (2.553) BS02 FE N/A GO:0008199 ... N/A 28074932
    100278 5lbh:B (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100279 5lbh:C (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100280 5lbh:C (2.553) BS02 FE N/A GO:0008199 ... N/A 28074932
    100281 5lbh:D (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100282 5lbh:E (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100283 5lbh:F (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100284 5lbh:G (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100285 5lbh:G (2.553) BS02 FE N/A GO:0008199 ... N/A 28074932
    100286 5lbh:H (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100287 5lbh:I (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100288 5lbh:J (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100289 5lbh:J (2.553) BS02 FE N/A GO:0008199 ... N/A 28074932
    100290 5lbh:K (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100291 5lbh:L (2.553) BS01 FE N/A GO:0008199 ... N/A 28074932
    100292 5lbh:L (2.553) BS02 FE N/A GO:0008199 ... N/A 28074932
    100293 5lbi:A (1.43) BS01 CA ? GO:0003677 ... O74036 27725183
    100294 5lbo:A (2.25) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29672041
    100295 5lbo:B (2.25) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29672041
    100296 5lbo:C (2.25) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29672041
    100297 5lbo:D (2.25) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29672041
    100298 5lbt:A (1.75) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 N/A
    100299 5lbt:B (1.75) BS03 ZN 1.10.5.1 GO:0001512 ... P16083 N/A
    100300 5lbu:A (1.65) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 N/A
    100301 5lbu:B (1.65) BS04 ZN 1.10.5.1 GO:0001512 ... P16083 N/A
    100302 5lbw:A (1.9) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 29191878
    100303 5lbw:B (1.9) BS03 ZN 1.10.5.1 GO:0001512 ... P16083 29191878
    100304 5lby:A (1.4) BS01 ZN 1.10.5.1 GO:0001512 ... P16083 29191878
    100305 5lby:B (1.4) BS03 ZN 1.10.5.1 GO:0001512 ... P16083 29191878
    100306 5lbz:A (1.4) BS03 ZN 1.10.5.1 GO:0001512 ... P16083 29191878
    100307 5lbz:B (1.4) BS04 ZN 1.10.5.1 GO:0001512 ... P16083 29191878
    100308 5lc5:R (4.35) BS01 ZN ? N/A P23934 27509854
    100309 5lc8:A (1.8) BS01 FE2 1.13.11.12
    1.13.11.58
    1.13.11.77    		 GO:0016702 ... Q8RNT4 28093240
    100310 5lca:A (1.93) BS01 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100311 5lca:A (1.93) BS02 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100312 5lcf:A (1.86) BS01 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100313 5lcf:A (1.86) BS02 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100314 5lch:A (1.94) BS01 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100315 5lch:A (1.94) BS02 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100316 5lcl:A (2.2) BS02 ZN ? GO:0003684 ... P28519 28444956
    100317 5lcl:B (2.2) BS02 ZN ? GO:0000110 ... P28519 28444956
    100318 5lcm:A (1.9) BS03 ZN ? GO:0003684 ... P28519 28444956
    100319 5lcm:B (1.9) BS03 ZN ? GO:0003684 ... P28519 28444956
    100320 5ld1:C (2.09) BS04 MG N/A GO:0006797 ... N/A 29531036
    100321 5ld9:A (1.733) BS01 ZN 3.4.19.15 GO:0006508 ... Q8U1Y4 28479062
    100322 5ld9:B (1.733) BS01 ZN 3.4.19.15 GO:0006508 ... Q8U1Y4 28479062
    100323 5lda:A (1.9) BS01 ZN 3.4.19.15 GO:0006508 ... Q8U1Y4 28479062
    100324 5ldb:B (2.3) BS03 MG N/A GO:0006797 ... N/A 29531036
    100325 5ldb:D (2.3) BS03 MG N/A GO:0006797 ... N/A 29531036
    100326 5lds:A (2.0) BS02 ZN 3.4.11.2 GO:0001525 ... P15145 28393915
    100327 5lds:B (2.0) BS01 ZN 3.4.11.2 GO:0001525 ... P15145 28393915
    100328 5lds:C (2.0) BS01 ZN 3.4.11.2 GO:0001525 ... P15145 28393915
    100329 5lds:D (2.0) BS03 ZN 3.4.11.2 GO:0001525 ... P15145 28393915
    100330 5ldt:A (2.88) BS01 CA ? GO:0046872 ... Q659I5 27693650
    100331 5ldt:A (2.88) BS02 CA ? GO:0046872 ... Q659I5 27693650
    100332 5ldt:A (2.88) BS04 CA ? GO:0046872 ... Q659I5 27693650
    100333 5ldt:B (2.88) BS01 CA ? GO:0046872 ... Q659I5 27693650
    100334 5ldt:B (2.88) BS03 CA ? GO:0046872 ... Q659I5 27693650
    100335 5ldt:B (2.88) BS04 CA ? GO:0046872 ... Q659I5 27693650
    100336 5ldt:C (2.88) BS01 CA ? GO:0046872 ... Q659I5 27693650
    100337 5ldt:C (2.88) BS02 CA ? GO:0046872 ... Q659I5 27693650
    100338 5ldt:C (2.88) BS04 CA ? GO:0046872 ... Q659I5 27693650
    100339 5ldu:A (2.3) BS01 CU ? GO:0005507 ... A0A0A7M685 N/A
    100340 5ldu:A (2.3) BS02 CU ? GO:0005507 ... A0A0A7M685 N/A
    100341 5ldu:A (2.3) BS03 CU ? GO:0005507 ... A0A0A7M685 N/A
    100342 5ldu:A (2.3) BS04 CU ? GO:0005507 ... A0A0A7M685 N/A
    100343 5ldv:A (2.1) BS01 CA ? GO:0046872 ... Q659I5 27693650
    100344 5ldw:R (4.27) BS01 ZN ? N/A P23934 27509854
    100345 5ldx:R (5.6) BS01 ZN ? N/A P23934 27509854
    100346 5ldz:A (2.2) BS01 ZN 3.1.3.11 GO:0000122 ... P09467 27841754
    100347 5ldz:A (2.2) BS02 ZN 3.1.3.11 GO:0000122 ... P09467 27841754
    100348 5ldz:B (2.2) BS01 ZN 3.1.3.11 GO:0000122 ... P09467 27841754
    100349 5ldz:C (2.2) BS01 ZN 3.1.3.11 GO:0000122 ... P09467 27841754
    100350 5ldz:D (2.2) BS01 ZN 3.1.3.11 GO:0000122 ... P09467 27841754
    100351 5ldz:D (2.2) BS02 ZN 3.1.3.11 GO:0000122 ... P09467 27841754
    100352 5ldz:E (2.2) BS01 ZN 3.1.3.11 GO:0000122 ... P09467 27841754
    100353 5ldz:E (2.2) BS02 ZN 3.1.3.11 GO:0000122 ... P09467 27841754
    100354 5ldz:F (2.2) BS01 ZN 3.1.3.11 GO:0000122 ... P09467 27841754
    100355 5le1:A (1.4) BS01 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100356 5le1:A (1.4) BS02 ZN 3.5.2.6 N/A Q9K2N0 28451231
    100357 5le5:H (1.8) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100358 5le5:I (1.8) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100359 5le5:K (1.8) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100360 5le5:V (1.8) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100361 5le5:W (1.8) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100362 5le5:Y (1.8) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100363 5lef:A (2.088) BS02 MG ? GO:0000139 ... P20340 29093437
    100364 5lef:B (2.088) BS02 MG ? GO:0000139 ... P20340 29093437
    100365 5lew:A (2.8) BS01 ZN 2.7.7.7 GO:0003824 ... P9WNT7 29021523
    100366 5lew:A (2.8) BS02 ZN 2.7.7.7 GO:0003824 ... P9WNT7 29021523
    100367 5lew:A (2.8) BS03 ZN 2.7.7.7 GO:0003824 ... P9WNT7 29021523
    100368 5lex:H (2.2) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100369 5lex:I (2.2) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100370 5lex:K (2.2) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100371 5lex:V (2.2) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100372 5lex:W (2.2) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100373 5lex:Y (2.2) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100374 5ley:H (1.9) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100375 5ley:I (1.9) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100376 5ley:K (1.9) BS02 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100377 5ley:V (1.9) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100378 5ley:W (1.9) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100379 5ley:Y (1.9) BS02 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100380 5lez:H (2.19) BS02 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100381 5lez:I (2.19) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100382 5lez:K (2.19) BS02 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100383 5lez:V (2.19) BS02 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100384 5lez:W (2.19) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100385 5lez:Y (2.19) BS02 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100386 5lf0:H (2.41) BS02 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100387 5lf0:I (2.41) BS02 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100388 5lf0:K (2.41) BS02 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100389 5lf0:V (2.41) BS03 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100390 5lf0:W (2.41) BS02 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100391 5lf0:Y (2.41) BS02 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100392 5lf1:H (2.0) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100393 5lf1:I (2.0) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100394 5lf1:K (2.0) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100395 5lf1:V (2.0) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    100396 5lf1:W (2.0) BS01 MG 3.4.25.1 GO:0000502 ... P49720 27493187
    100397 5lf1:Y (2.0) BS01 MG 3.4.25.1 GO:0004298 ... P28074 27493187
    100398 5lf2:A (1.85) BS01 CA ? N/A P15800 27425256
    100399 5lf2:B (1.85) BS01 CA ? N/A P15800 27425256
    100400 5lf3:H (2.1) BS01 MG 3.4.25.1 GO:0004298 ... Q99436 27493187
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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