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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    99601 5kxa:A (2.59) BS02 ZN 3.1.4.39 GO:0003676 ... Q13822 27754931
    99602 5kxa:A (2.59) BS03 CA 3.1.4.39 GO:0003676 ... Q13822 27754931
    99603 5kxb:A (2.33) BS01 CA ? GO:0030246 ... A0A1D5B395 27601469
    99604 5kxb:A (2.33) BS02 MN ? GO:0030246 ... A0A1D5B395 27601469
    99605 5kxb:B (2.33) BS01 CA ? GO:0030246 ... A0A1D5B395 27601469
    99606 5kxb:B (2.33) BS02 MN ? GO:0030246 ... A0A1D5B395 27601469
    99607 5kxb:C (2.33) BS01 CA ? GO:0030246 ... A0A1D5B395 27601469
    99608 5kxb:C (2.33) BS02 MN ? GO:0030246 ... A0A1D5B395 27601469
    99609 5kxb:D (2.33) BS01 CA ? GO:0030246 ... A0A1D5B395 27601469
    99610 5kxb:D (2.33) BS02 MN ? GO:0030246 ... A0A1D5B395 27601469
    99611 5kxc:A (1.8) BS02 CA ? GO:0030246 ... A0A1D5B395 27601469
    99612 5kxc:A (1.8) BS03 MN ? GO:0030246 ... A0A1D5B395 27601469
    99613 5kxc:B (1.8) BS02 CA ? GO:0030246 ... A0A1D5B395 27601469
    99614 5kxc:B (1.8) BS03 MN ? GO:0030246 ... A0A1D5B395 27601469
    99615 5kxc:C (1.8) BS02 CA ? GO:0030246 ... A0A1D5B395 27601469
    99616 5kxc:C (1.8) BS03 MN ? GO:0030246 ... A0A1D5B395 27601469
    99617 5kxc:D (1.8) BS02 CA ? GO:0030246 ... A0A1D5B395 27601469
    99618 5kxc:D (1.8) BS03 MN ? GO:0030246 ... A0A1D5B395 27601469
    99619 5kxd:A (1.95) BS01 CA ? GO:0030246 ... A0A1D5B396 27601469
    99620 5kxd:A (1.95) BS02 MN ? GO:0030246 ... A0A1D5B396 27601469
    99621 5kxd:B (1.95) BS01 CA ? GO:0030246 ... A0A1D5B396 27601469
    99622 5kxd:B (1.95) BS02 MN ? GO:0030246 ... A0A1D5B396 27601469
    99623 5kxd:C (1.95) BS01 CA ? GO:0030246 ... A0A1D5B396 27601469
    99624 5kxd:C (1.95) BS02 MN ? GO:0030246 ... A0A1D5B396 27601469
    99625 5kxd:D (1.95) BS01 CA ? GO:0030246 ... A0A1D5B396 27601469
    99626 5kxd:D (1.95) BS02 MN ? GO:0030246 ... A0A1D5B396 27601469
    99627 5kxe:A (2.09) BS02 MN ? GO:0030246 ... A0A1D5B395 27601469
    99628 5kxe:A (2.09) BS03 CA ? GO:0030246 ... A0A1D5B395 27601469
    99629 5kxe:B (2.09) BS02 MN ? GO:0030246 ... A0A1D5B395 27601469
    99630 5kxe:B (2.09) BS03 CA ? GO:0030246 ... A0A1D5B395 27601469
    99631 5kxe:C (2.09) BS02 MN ? GO:0030246 ... A0A1D5B395 27601469
    99632 5kxe:C (2.09) BS03 CA ? GO:0030246 ... A0A1D5B395 27601469
    99633 5kxe:D (2.09) BS02 MN ? GO:0030246 ... A0A1D5B395 27601469
    99634 5kxe:D (2.09) BS03 CA ? GO:0030246 ... A0A1D5B395 27601469
    99635 5kxu:A (1.2) BS01 CA 3.4.21.64 GO:0004252 ... P06873 28361898
    99636 5kxu:A (1.2) BS02 CA 3.4.21.64 GO:0004252 ... P06873 28361898
    99637 5kxv:A (0.98) BS01 CA 3.4.21.64 GO:0004252 ... P06873 28361898
    99638 5kxv:A (0.98) BS02 CA 3.4.21.64 GO:0004252 ... P06873 28361898
    99639 5kyi:A (1.7) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    99640 5kyl:A (1.85) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    99641 5kyn:A (2.552) BS01 ZN ? GO:0000139 ... Q15436 27551091
    99642 5kyn:B (2.552) BS02 ZN ? GO:0000139 ... Q15436 27551091
    99643 5kyu:A (3.512) BS02 ZN ? GO:0000139 ... Q15436 27551091
    99644 5kyu:B (3.512) BS01 ZN ? GO:0006886 ... O94855 27551091
    99645 5kyw:A (3.2) BS02 ZN ? GO:0000139 ... Q15436 27551091
    99646 5kyw:B (3.2) BS01 ZN ? GO:0006886 ... O94855 27551091
    99647 5kyx:A (3.516) BS01 ZN ? GO:0000139 ... Q15436 27551091
    99648 5kyx:B (3.516) BS01 ZN ? GO:0006886 ... O94855 27551091
    99649 5kyy:A (3.403) BS01 ZN ? GO:0000139 ... Q15436 27551091
    99650 5kyy:B (3.403) BS01 ZN ? GO:0006886 ... O94855 27551091
    99651 5kz6:A (1.252) BS01 ZN 3.2.1.14 GO:0004553 ... A0A6L7H1P2 N/A
    99652 5kz6:A (1.252) BS02 ZN 3.2.1.14 GO:0004553 ... A0A6L7H1P2 N/A
    99653 5kzj:A (2.2) BS01 ZN ? GO:0007155 ... A1B2F3 28887302
    99654 5kzj:B (2.2) BS01 ZN ? GO:0007155 ... A1B2F3 28887302
    99655 5kzk:A (2.28) BS01 CO 2.1.1.- GO:0003723 ... Q92SJ4 N/A
    99656 5kzk:B (2.28) BS01 CO 2.1.1.- GO:0003723 ... Q92SJ4 N/A
    99657 5kzm:B (2.804) BS01 CA 4.2.1.20 GO:0000162 ... Q5NE79 31316809
    99658 5kzn:A (2.8) BS01 MG ? GO:0004930 ... Q14416 28002967
    99659 5kzp:F (2.262) BS02 CA N/A N/A N/A 28794021
    99660 5kzp:F (2.262) BS03 CA N/A N/A N/A 28794021
    99661 5kzp:H (2.262) BS02 CA N/A N/A N/A 28794021
    99662 5kzp:I (2.262) BS02 CA N/A N/A N/A 28794021
    99663 5kzp:J (2.262) BS02 CA N/A N/A N/A 28794021
    99664 5kzp:J (2.262) BS03 CA N/A N/A N/A 28794021
    99665 5kzp:K (2.262) BS02 CA N/A N/A N/A 28794021
    99666 5kzp:K (2.262) BS03 CA N/A N/A N/A 28794021
    99667 5kzp:K (2.262) BS04 CA N/A N/A N/A 28794021
    99668 5kzp:K (2.262) BS05 CA N/A N/A N/A 28794021
    99669 5kzp:L (2.262) BS02 CA N/A N/A N/A 28794021
    99670 5kzz:A (1.332) BS01 ZN ? N/A Q98SW5 27545348
    99671 5kzz:A (1.332) BS02 ZN ? N/A Q98SW5 27545348
    99672 5l01:A (1.9) BS01 FE 1.14.16.4 GO:0002576 ... P17752 28041831
    99673 5l03:A (1.469) BS01 ZN 4.6.1.12 GO:0008299 ... A0A069B2G5 N/A
    99674 5l03:B (1.469) BS01 ZN 4.6.1.12 GO:0008299 ... A0A069B2G5 N/A
    99675 5l03:C (1.469) BS01 ZN 4.6.1.12 GO:0008299 ... A0A069B2G5 N/A
    99676 5l05:A (1.7) BS02 NA 1.11.1.21 GO:0004096 ... Q3JNW6 12628252
    99677 5l05:B (1.7) BS02 NA 1.11.1.21 GO:0004096 ... Q3JNW6 12628252
    99678 5l0b:A (2.41) BS05 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99679 5l0b:A (2.41) BS06 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99680 5l0b:A (2.41) BS07 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99681 5l0b:B (2.41) BS04 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99682 5l0b:B (2.41) BS05 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99683 5l0b:B (2.41) BS06 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99684 5l0e:A (3.06) BS05 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99685 5l0e:A (3.06) BS06 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99686 5l0e:A (3.06) BS07 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99687 5l0e:B (3.06) BS04 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99688 5l0e:B (3.06) BS05 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99689 5l0e:B (3.06) BS06 ZN 3.1.4.39 GO:0003676 ... Q64610 27660691
    99690 5l0k:A (2.73) BS01 ZN 3.1.4.39 GO:0001953 ... Q64610 27660691
    99691 5l0k:A (2.73) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 27660691
    99692 5l0k:A (2.73) BS03 CA 3.1.4.39 GO:0001953 ... Q64610 27660691
    99693 5l0k:B (2.73) BS01 ZN 3.1.4.39 GO:0001953 ... Q64610 27660691
    99694 5l0k:B (2.73) BS02 ZN 3.1.4.39 GO:0001953 ... Q64610 27660691
    99695 5l0k:B (2.73) BS03 CA 3.1.4.39 GO:0001953 ... Q64610 27660691
    99696 5l0m:A (2.197) BS03 ZN ? GO:0003677 ... O00482 27984042
    99697 5l0m:A (2.197) BS04 ZN ? GO:0003677 ... O00482 27984042
    99698 5l0q:A (2.759) BS01 MG 3.4.24.81 N/A Q10741 27503072
    99699 5l0q:D (2.759) BS01 MG 3.4.24.81 N/A Q10741 27503072
    99700 5l0r:B (1.5) BS01 CA ? GO:0005509 ... P46531 28775322
    99701 5l0s:B (1.45) BS01 CA 3.4.21.21 GO:0005509 ... P08709 28775322
    99702 5l0t:B (1.43) BS01 CA N/A GO:0005509 ... N/A 28775322
    99703 5l0u:B (1.8) BS01 CA N/A GO:0005509 ... N/A 28775322
    99704 5l0v:B (1.305) BS01 CA N/A GO:0005509 ... N/A 28775322
    99705 5l0z:A (2.9) BS01 CO 2.1.1.- GO:0003723 ... Q92SJ4 N/A
    99706 5l0z:B (2.9) BS01 CO 2.1.1.- GO:0003723 ... Q92SJ4 N/A
    99707 5l12:A (1.716) BS01 ZN 4.6.1.12 GO:0008299 ... A3NWD9 N/A
    99708 5l12:B (1.716) BS01 ZN 4.6.1.12 GO:0008299 ... A3NWD9 N/A
    99709 5l12:C (1.716) BS01 ZN 4.6.1.12 GO:0008299 ... A3NWD9 N/A
    99710 5l14:A (1.9) BS01 CA 3.2.1.18 GO:0004308 ... R4NFR6 28934455
    99711 5l15:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... R4NFR6 28934455
    99712 5l17:A (2.4) BS01 CA 3.2.1.18 GO:0004308 ... R4NFR6 28934455
    99713 5l18:A (1.8) BS01 CA 3.2.1.18 GO:0004308 ... R4NFR6 28934455
    99714 5l1i:A (2.78) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    99715 5l1i:A (2.78) BS05 CA 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    99716 5l1j:A (1.94) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    99717 5l1j:A (1.94) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    99718 5l1k:A (1.82) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    99719 5l1k:A (1.82) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    99720 5l1l:A (1.62) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    99721 5l1l:A (1.62) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27694439
    99722 5l1z:D (5.9) BS02 ZN ? GO:0001070 ... P69697 27731797
    99723 5l22:A (3.15) BS03 MG ? GO:0005524 ... O67184 28216041
    99724 5l22:B (3.15) BS02 MG ? GO:0005524 ... O67184 28216041
    99725 5l2l:A (1.55) BS04 ZN ? N/A P32505 28180315
    99726 5l2l:A (1.55) BS05 ZN ? N/A P32505 28180315
    99727 5l2l:A (1.55) BS06 ZN ? N/A P32505 28180315
    99728 5l2l:B (1.55) BS04 ZN ? N/A P32505 28180315
    99729 5l2l:B (1.55) BS05 ZN ? N/A P32505 28180315
    99730 5l2l:B (1.55) BS06 ZN ? N/A P32505 28180315
    99731 5l2l:E (1.55) BS04 ZN ? N/A P32505 28180315
    99732 5l2l:E (1.55) BS05 ZN ? N/A P32505 28180315
    99733 5l2l:E (1.55) BS06 ZN ? N/A P32505 28180315
    99734 5l2l:F (1.55) BS04 ZN ? N/A P32505 28180315
    99735 5l2l:F (1.55) BS05 ZN ? N/A P32505 28180315
    99736 5l2l:F (1.55) BS06 ZN ? N/A P32505 28180315
    99737 5l2v:A (1.1) BS01 CU ? N/A A0A0H3GIZ6 N/A
    99738 5l2v:B (1.1) BS01 CU ? N/A A0A0H3GIZ6 N/A
    99739 5l2x:A (2.2) BS03 CA 2.7.7.102
    2.7.7.7    		 GO:0003887 ... Q96LW4 27819052
    99740 5l2x:B (2.2) BS03 CA 2.7.7.102
    2.7.7.7    		 GO:0003887 ... Q96LW4 27819052
    99741 5l2y:H (1.82) BS02 CA 3.4.21.21 GO:0004252 ... P08709 27612545
    99742 5l2z:H (1.79) BS02 CA 3.4.21.21 GO:0004252 ... P08709 27612545
    99743 5l30:H (1.73) BS02 CA 3.4.21.21 GO:0004252 ... P08709 27612545
    99744 5l32:A (2.1) BS02 ZN ? GO:0005506 ... P0ABE7 27649076
    99745 5l32:B (2.1) BS02 ZN ? GO:0005506 ... P0ABE7 27649076
    99746 5l32:C (2.1) BS01 ZN ? GO:0005506 ... P0ABE7 27649076
    99747 5l32:D (2.1) BS01 ZN ? GO:0005506 ... P0ABE7 27649076
    99748 5l3o:A (1.98) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28170240
    99749 5l3o:B (1.98) BS02 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 28170240
    99750 5l3u:E (1.23) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    99751 5l3u:E (1.23) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    99752 5l3u:E (1.23) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    99753 5l3u:E (1.23) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    99754 5l3u:E (1.23) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    99755 5l41:E (1.25) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    99756 5l41:E (1.25) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    99757 5l41:E (1.25) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    99758 5l41:E (1.25) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    99759 5l41:E (1.25) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    99760 5l43:A (1.8) BS01 ZN ? GO:0004180 ... A0A1L1QK30 27754586
    99761 5l43:A (1.8) BS02 MG ? GO:0004180 ... A0A1L1QK30 27754586
    99762 5l43:B (1.8) BS01 ZN ? GO:0004180 ... A0A1L1QK30 27754586
    99763 5l43:B (1.8) BS02 MG ? GO:0004180 ... A0A1L1QK30 27754586
    99764 5l44:A (1.75) BS01 ZN ? GO:0004180 ... A0A1L1QK30 27754586
    99765 5l44:A (1.75) BS02 MG ? GO:0004180 ... A0A1L1QK30 27754586
    99766 5l44:B (1.75) BS01 ZN ? GO:0004180 ... A0A1L1QK30 27754586
    99767 5l44:B (1.75) BS02 MG ? GO:0004180 ... A0A1L1QK30 27754586
    99768 5l52:G (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P21243 27789522
    99769 5l52:I (2.7) BS01 MG 3.4.25.1 GO:0000502 ... P25451 27789522
    99770 5l52:K (2.7) BS02 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    99771 5l52:N (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P38624 27789522
    99772 5l52:V (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P25043 27789522
    99773 5l52:Y (2.7) BS01 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    99774 5l52:Z (2.7) BS02 MG 3.4.25.1 GO:0000502 ... P23724 27789522
    99775 5l54:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 27789522
    99776 5l54:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 27789522
    99777 5l54:K (2.8) BS02 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    99778 5l54:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 27789522
    99779 5l54:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 27789522
    99780 5l54:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    99781 5l54:Z (2.8) BS02 MG 3.4.25.1 GO:0000502 ... P23724 27789522
    99782 5l55:G (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P21243 27789522
    99783 5l55:K (2.9) BS02 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    99784 5l55:N (2.9) BS01 MG 3.4.25.1 GO:0000502 ... P38624 27789522
    99785 5l55:V (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043 27789522
    99786 5l55:Y (2.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 27789522
    99787 5l55:Z (2.9) BS02 MG 3.4.25.1 GO:0000502 ... P23724 27789522
    99788 5l5a:G (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P21243 27789522
    99789 5l5a:I (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P25451 27789522
    99790 5l5a:K (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P28062
    P30656    		 27789522
    99791 5l5a:N (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P38624 27789522
    99792 5l5a:V (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P25043 27789522
    99793 5l5a:Y (2.4) BS01 MG 3.4.25.1 GO:0004298 ... P28062
    P30656    		 27789522
    99794 5l5a:Z (2.4) BS01 MG 3.4.25.1 GO:0000502 ... P23724 27789522
    99795 5l5b:G (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P21243 27789522
    99796 5l5b:I (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P25451 27789522
    99797 5l5b:K (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P28062
    P30656    		 27789522
    99798 5l5b:N (2.8) BS01 MG 3.4.25.1 GO:0000502 ... P38624 27789522
    99799 5l5b:V (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P25043 27789522
    99800 5l5b:Y (2.8) BS01 MG 3.4.25.1 GO:0004298 ... P28062
    P30656    		 27789522
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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