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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    99401 5kn0:B (2.729) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99402 5kn0:B (2.729) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99403 5kn0:B (2.729) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99404 5kn0:C (2.729) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99405 5kn0:C (2.729) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99406 5kn0:C (2.729) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99407 5kn0:D (2.729) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99408 5kn0:D (2.729) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99409 5kn0:D (2.729) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99410 5kn0:D (2.729) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    99411 5kn1:A (2.137) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99412 5kn1:A (2.137) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99413 5kn1:A (2.137) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99414 5kn1:A (2.137) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    99415 5kn1:A (2.137) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    99416 5kn1:B (2.137) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99417 5kn1:B (2.137) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99418 5kn1:B (2.137) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99419 5kn1:B (2.137) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    99420 5kn1:B (2.137) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    99421 5kn1:B (2.137) BS06 CA ? GO:0005509 ... Q05JF3 27649144
    99422 5kn1:B (2.137) BS07 CA ? GO:0005509 ... Q05JF3 27649144
    99423 5kn1:B (2.137) BS08 CA ? GO:0005509 ... Q05JF3 27649144
    99424 5kn1:B (2.137) BS09 CA ? GO:0005509 ... Q05JF3 27649144
    99425 5kn1:B (2.137) BS10 CA ? GO:0005509 ... Q05JF3 27649144
    99426 5kn1:C (2.137) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99427 5kn1:C (2.137) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99428 5kn1:C (2.137) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99429 5kn1:C (2.137) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    99430 5kn1:C (2.137) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    99431 5kn1:C (2.137) BS06 CA ? GO:0005509 ... Q05JF3 27649144
    99432 5kn1:C (2.137) BS07 CA ? GO:0005509 ... Q05JF3 27649144
    99433 5kn1:C (2.137) BS08 CA ? GO:0005509 ... Q05JF3 27649144
    99434 5kn1:C (2.137) BS09 CA ? GO:0005509 ... Q05JF3 27649144
    99435 5kn2:A (2.601) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99436 5kn2:A (2.601) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99437 5kn2:A (2.601) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99438 5kn2:A (2.601) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    99439 5kn2:A (2.601) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    99440 5kn2:B (2.601) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99441 5kn2:B (2.601) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99442 5kn2:B (2.601) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99443 5kn2:B (2.601) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    99444 5kn2:B (2.601) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    99445 5kn2:B (2.601) BS06 CA ? GO:0005509 ... Q05JF3 27649144
    99446 5kn2:B (2.601) BS07 CA ? GO:0005509 ... Q05JF3 27649144
    99447 5kn2:B (2.601) BS08 CA ? GO:0005509 ... Q05JF3 27649144
    99448 5kn2:C (2.601) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99449 5kn2:C (2.601) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99450 5kn2:C (2.601) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99451 5kn2:C (2.601) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    99452 5kn2:C (2.601) BS05 CA ? GO:0005509 ... Q05JF3 27649144
    99453 5kn2:C (2.601) BS06 CA ? GO:0005509 ... Q05JF3 27649144
    99454 5kn2:C (2.601) BS07 CA ? GO:0005509 ... Q05JF3 27649144
    99455 5kn2:C (2.601) BS08 CA ? GO:0005509 ... Q05JF3 27649144
    99456 5kn2:C (2.601) BS09 CA ? GO:0005509 ... Q05JF3 27649144
    99457 5kn2:C (2.601) BS10 CA ? GO:0005509 ... Q05JF3 27649144
    99458 5kn3:A (1.849) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99459 5kn3:A (1.849) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99460 5kn3:A (1.849) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99461 5kn5:C (2.8) BS01 ZN ? N/A P01135 27543934
    99462 5kn5:F (2.8) BS01 ZN ? N/A P01135 27543934
    99463 5kn8:A (1.81) BS04 CA 3.2.2.31 GO:0003677 ... P83847 28130451
    99464 5kn9:A (1.93) BS04 CA 3.2.2.31 GO:0003677 ... P83847 28130451
    99465 5knb:B (3.251) BS01 MG 7.2.2.1 GO:0005515 ... Q08636 27807367
    99466 5knp:A (2.45) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 N/A
    99467 5knp:B (2.45) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 N/A
    99468 5knp:C (2.45) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 N/A
    99469 5knp:D (2.45) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 N/A
    99470 5knq:A (2.553) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 N/A
    99471 5knq:B (2.553) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 N/A
    99472 5knq:C (2.553) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 N/A
    99473 5knq:D (2.553) BS02 MG 2.4.2.8 GO:0000166 ... P9WHQ9 N/A
    99474 5knr:A (2.864) BS02 MG 2.4.2.8 GO:0000166 ... P0A9M2 N/A
    99475 5kns:A (2.792) BS02 MG 2.4.2.8 GO:0000166 ... P0A9M2 N/A
    99476 5kns:B (2.792) BS02 MG 2.4.2.8 GO:0000166 ... P0A9M2 N/A
    99477 5knu:A (2.808) BS02 MG 2.4.2.8 GO:0000166 ... P0A9M2 N/A
    99478 5knu:B (2.808) BS02 MG 2.4.2.8 GO:0000166 ... P0A9M2 N/A
    99479 5knv:A (2.861) BS02 MG 2.4.2.8 GO:0000166 ... P0A9M2 N/A
    99480 5knv:B (2.861) BS02 MG 2.4.2.8 GO:0000166 ... P0A9M2 N/A
    99481 5knx:A (2.4) BS02 MG 2.4.2.8 GO:0000166 ... P0A9M2 N/A
    99482 5ko3:A (1.949) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... K9N7C7 28079137
    99483 5kob:A (1.6) BS01 FE2 3.5.1.88 GO:0006412 ... Q13XB1 N/A
    99484 5kob:B (1.6) BS01 FE2 3.5.1.88 GO:0006412 ... Q13XB1 N/A
    99485 5kob:C (1.6) BS01 FE2 3.5.1.88 GO:0006412 ... Q13XB1 N/A
    99486 5kob:D (1.6) BS01 FE2 3.5.1.88 GO:0006412 ... Q13XB1 N/A
    99487 5koh:B (1.83) BS02 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    99488 5koh:B (1.83) BS03 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    99489 5koh:D (1.83) BS01 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    99490 5koh:D (1.83) BS02 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    99491 5koj:B (2.592) BS02 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    99492 5koj:B (2.592) BS03 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    99493 5koj:D (2.592) BS01 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    99494 5koj:D (2.592) BS03 FE 1.18.6.1 GO:0005524 ... A9H5W8 27487256
    99495 5koz:A (2.3) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99496 5koz:B (2.3) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99497 5koz:C (2.3) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99498 5koz:D (2.3) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99499 5koz:E (2.3) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99500 5koz:F (2.3) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99501 5koz:G (2.3) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99502 5koz:H (2.3) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99503 5koz:I (2.3) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99504 5koz:J (2.3) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99505 5koz:K (2.3) BS02 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99506 5koz:L (2.3) BS03 MG 4.1.1.39 GO:0000287 ... Q6N0W9 N/A
    99507 5kqb:A (-1.00) BS01 ZN 3.4.24.75 N/A Q2G1F1 28729697
    99508 5kqc:A (-1.00) BS01 ZN 3.4.24.75 N/A Q2G1F1 28729697
    99509 5kr5:A (2.1) BS02 CA N/A GO:0008483 ... N/A N/A
    99510 5kr5:A (2.1) BS03 CA N/A GO:0008483 ... N/A N/A
    99511 5kr5:B (2.1) BS03 CA N/A GO:0008483 ... N/A N/A
    99512 5kr7:A (1.9) BS01 FE2 1.14.11.66 N/A Q9H3R0 27476424
    99513 5kr7:A (1.9) BS02 ZN 1.14.11.66 N/A Q9H3R0 27476424
    99514 5kr7:B (1.9) BS01 FE2 1.14.11.66 N/A Q9H3R0 27476424
    99515 5kr7:B (1.9) BS02 ZN 1.14.11.66 N/A Q9H3R0 27476424
    99516 5krb:B (2.101) BS03 ZN ? GO:0003700 ... Q64249 27984042
    99517 5krb:B (2.101) BS04 ZN ? GO:0003700 ... Q64249 27984042
    99518 5krb:G (2.101) BS03 ZN ? GO:0003700 ... Q64249 27984042
    99519 5krb:G (2.101) BS04 ZN ? GO:0003700 ... Q64249 27984042
    99520 5krr:A (2.5) BS01 MN 1.1.1.267 GO:0008299 ... Q8DBF5 30278288
    99521 5krr:B (2.5) BS01 MN 1.1.1.267 GO:0008299 ... Q8DBF5 30278288
    99522 5kru:A (1.6) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    99523 5ks1:A (2.4) BS01 MN 1.1.1.267 GO:0008299 ... Q8DBF5 30278288
    99524 5ks1:B (2.4) BS02 MN 1.1.1.267 GO:0008299 ... Q8DBF5 30278288
    99525 5ks8:C (3.01) BS02 MN ? GO:0003824 ... Q1H157 27708276
    99526 5ks8:D (3.01) BS03 MN ? GO:0003824 ... Q1H157 27708276
    99527 5ks8:F (3.01) BS01 MN ? GO:0003824 ... Q1H157 27708276
    99528 5ks9:C (2.55) BS02 CA ? GO:0006955 ... L8E864 27568928
    99529 5ks9:E (2.55) BS02 CA ? GO:0002250 ... A0A0B4J274
    P01848    		 27568928
    99530 5ks9:G (2.55) BS02 CA ? GO:0002250 ... A0A0B4J274
    P01848    		 27568928
    99531 5ksq:A (2.63) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99532 5ksq:B (2.63) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99533 5ksr:A (1.96) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99534 5ksr:B (1.96) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99535 5ksr:C (1.96) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99536 5ksr:D (1.96) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99537 5kss:A (2.82) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99538 5kss:B (2.82) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99539 5kst:A (2.759) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99540 5kst:B (2.759) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99541 5kst:C (2.759) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99542 5kst:D (2.759) BS01 MN 3.1.3.5 GO:0000166 ... Q9PF20 28677327
    99543 5ksz:A (2.5) BS01 MG 3.6.5.- GO:0003924 ... Q8IXI2 27605430
    99544 5ksz:A (2.5) BS02 MG 3.6.5.- GO:0003924 ... Q8IXI2 27605430
    99545 5kt2:A (2.488) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99546 5kt2:A (2.488) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99547 5kt2:A (2.488) BS06 MG 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99548 5kt3:A (2.64) BS04 MN 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99549 5kt3:A (2.64) BS05 MN 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99550 5kt3:A (2.64) BS06 MN 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99551 5kt4:A (2.78) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99552 5kt5:A (2.798) BS03 MN 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99553 5kt5:A (2.798) BS05 MN 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99554 5kt6:A (3.54) BS04 MG 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99555 5kt6:A (3.54) BS05 MG 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99556 5kt7:A (3.151) BS03 MN 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99557 5kt7:A (3.151) BS05 MN 2.7.7.7 GO:0003684 ... Q9UNA4 27555320
    99558 5ktc:A (1.8) BS03 MG ? GO:0016747 ... V5RDR9 27404806
    99559 5ktd:A (1.9) BS03 MG ? GO:0016747 ... V5RDR9 27404806
    99560 5kth:A (2.21) BS03 CA ? N/A E1BHM0 27542410
    99561 5kth:A (2.21) BS04 CA ? N/A E1BHM0 27542410
    99562 5kth:A (2.21) BS05 CA ? N/A E1BHM0 27542410
    99563 5kti:A (1.8) BS03 CA ? N/A E1BHM0 27542410
    99564 5kti:A (1.8) BS04 CA ? N/A E1BHM0 27542410
    99565 5kti:A (1.8) BS05 CA ? N/A E1BHM0 27542410
    99566 5ktl:A (1.92) BS01 MN 4.3.3.7 GO:0005737 ... Q3M723 27845445
    99567 5ktl:A (1.92) BS02 MN 4.3.3.7 GO:0005737 ... Q3M723 27845445
    99568 5ktl:B (1.92) BS01 MN 4.3.3.7 GO:0005737 ... Q3M723 27845445
    99569 5kty:A (2.522) BS03 CA 3.6.5.- GO:0003924 ... Q8IXI2 27605430
    99570 5kty:A (2.522) BS04 CA 3.6.5.- GO:0003924 ... Q8IXI2 27605430
    99571 5ku1:A (2.501) BS02 MG 3.6.5.- GO:0003924 ... Q8IXI2 27605430
    99572 5ku1:A (2.501) BS03 MG 3.6.5.- GO:0003924 ... Q8IXI2 27605430
    99573 5ku6:A (1.8) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    99574 5ku6:B (1.8) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    99575 5ku6:C (1.8) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    99576 5ku6:D (1.8) BS02 ZN 4.2.1.1 GO:0004089 ... P22748 28975383
    99577 5kue:A (1.5) BS01 MG ? GO:0051560 ... Q8NE86 27569754
    99578 5kue:A (1.5) BS02 MG ? GO:0051560 ... Q8NE86 27569754
    99579 5kut:A (1.693) BS02 MG 3.6.5.- GO:0003924 ... Q8IXI1 27605430
    99580 5kut:B (1.693) BS02 MG 3.6.5.- GO:0003924 ... Q8IXI1 27605430
    99581 5kut:C (1.693) BS02 MG 3.6.5.- GO:0003924 ... Q8IXI1 27605430
    99582 5kv8:A (1.949) BS01 CA 3.2.1.18 GO:0004308 ... G8G134 28674426
    99583 5kv8:B (1.949) BS01 CA 3.2.1.18 GO:0004308 ... G8G134 28674426
    99584 5kv9:B (2.0) BS01 CA 3.2.1.18 GO:0004308 ... G8G134 28674426
    99585 5kva:A (1.827) BS02 CA 2.1.1.104 GO:0008168 ... C5Z4W3 27457122
    99586 5kva:B (1.827) BS02 CA 2.1.1.104 GO:0008168 ... C5Z4W3 27457122
    99587 5kvl:L (1.74) BS02 ZN N/A N/A N/A N/A
    99588 5kvp:A (-1.00) BS01 ZN 3.4.24.75 N/A O54308 27699884
    99589 5kw9:A (2.3) BS01 MG ? N/A Q83884 27647885
    99590 5kw9:A (2.3) BS02 MG ? N/A Q83884 27647885
    99591 5kwb:A (1.91) BS01 MG ? N/A Q5MQD0 28534504
    99592 5kwb:A (1.91) BS02 MG ? N/A Q5MQD0 28534504
    99593 5kwb:A (1.91) BS03 MG ? N/A Q5MQD0 28534504
    99594 5kws:A (1.316) BS02 CA ? GO:0030246 ... Q8D072 N/A
    99595 5kx5:A (2.5) BS02 MG ? GO:0000226 ... D0VWZ0 27882198
    99596 5kx5:A (2.5) BS03 CA ? GO:0000226 ... D0VWZ0 27882198
    99597 5kx5:B (2.5) BS03 MG ? GO:0000226 ... D0VWY9 27882198
    99598 5kx5:C (2.5) BS03 MG ? GO:0000226 ... D0VWZ0 27882198
    99599 5kx5:C (2.5) BS04 CA ? GO:0000226 ... D0VWZ0 27882198
    99600 5kxa:A (2.59) BS01 ZN 3.1.4.39 GO:0003676 ... Q13822 27754931
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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