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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    99201 5kgl:A (2.45) BS02 ZN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99202 5kgl:B (2.45) BS01 MN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99203 5kgl:B (2.45) BS02 ZN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99204 5kgm:A (2.95) BS01 MN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99205 5kgm:A (2.95) BS02 ZN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99206 5kgm:B (2.95) BS01 MN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99207 5kgm:B (2.95) BS02 ZN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99208 5kgn:A (1.95) BS02 MG 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99209 5kgn:A (1.95) BS03 MN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99210 5kgn:A (1.95) BS04 ZN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99211 5kgn:B (1.95) BS02 MG 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99212 5kgn:B (1.95) BS03 MN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99213 5kgn:B (1.95) BS04 ZN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002
    99214 5kgu:A (1.9) BS01 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    99215 5kh3:A (1.6) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    99216 5kh3:A (1.6) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    99217 5kh3:A (1.6) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    99218 5kh7:A (1.7) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    99219 5kh7:A (1.7) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    99220 5kh7:A (1.7) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    99221 5kh9:A (1.07) BS01 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    99222 5kh9:A (1.07) BS02 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    99223 5kh9:A (1.07) BS03 ZN 3.5.1.-
    3.5.1.98    		 GO:0008270 ... Q9UBN7 29019676
    99224 5kho:C (2.78) BS01 MG 3.6.5.2 GO:0003924 ... P61224 27839947
    99225 5kho:D (2.78) BS01 MG 3.6.5.2 GO:0003924 ... P61224 27839947
    99226 5khw:A (2.47) BS02 MG 2.7.10.2 GO:0004672 ... P23458 27827355
    99227 5khw:B (2.47) BS02 MG 2.7.10.2 GO:0004672 ... P23458 27827355
    99228 5kia:A (2.1) BS01 ZN 1.1.1.103 GO:0005737 ... Q2T9E1 N/A
    99229 5kia:A (2.1) BS02 CA 1.1.1.103 GO:0005737 ... Q2T9E1 N/A
    99230 5kik:A (2.2) BS01 FE 1.14.99.65 GO:0005737 ... F2RB80 27668828
    99231 5kik:A (2.2) BS02 FE 1.14.99.65 GO:0005737 ... F2RB80 27668828
    99232 5kiq:A (1.638) BS02 CA ? N/A A3CM52 27685666
    99233 5kiq:A (1.638) BS03 CA ? N/A A3CM52 27685666
    99234 5kiq:B (1.638) BS01 CA ? N/A A3CM52 27685666
    99235 5kiq:B (1.638) BS02 CA ? N/A A3CM52 27685666
    99236 5kis:A (2.4) BS01 CA ? GO:0005515 ... B6A880 N/A
    99237 5kiv:A (1.75) BS01 ZN 3.2.1.- GO:0016798 ... P67344 27345688
    99238 5kiw:B (3.41) BS02 MG 3.6.4.6 GO:0005524 ... P55072 29238611
    99239 5kix:A (1.75) BS02 CA 3.1.31.1 GO:0003676 ... P00644 N/A
    99240 5kj1:A (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 36189742
    99241 5kj1:A (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 36189742
    99242 5kj1:B (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 36189742
    99243 5kj1:B (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 36189742
    99244 5kj4:A (3.35) BS01 CA ? GO:0005509 ... Q99PJ1 27857071
    99245 5kj4:A (3.35) BS02 CA ? GO:0005509 ... Q99PJ1 27857071
    99246 5kj4:A (3.35) BS03 CA ? GO:0005509 ... Q99PJ1 27857071
    99247 5kj4:B (3.35) BS01 CA ? GO:0005509 ... Q99PJ1 27857071
    99248 5kj4:B (3.35) BS02 CA ? GO:0005509 ... Q99PJ1 27857071
    99249 5kj4:B (3.35) BS03 CA ? GO:0005509 ... Q99PJ1 27857071
    99250 5kj4:C (3.35) BS01 CA ? GO:0005509 ... Q99PJ1 27857071
    99251 5kj4:C (3.35) BS02 CA ? GO:0005509 ... Q99PJ1 27857071
    99252 5kj4:C (3.35) BS03 CA ? GO:0005509 ... Q99PJ1 27857071
    99253 5kj4:D (3.35) BS01 CA ? GO:0005509 ... Q99PJ1 27857071
    99254 5kj4:D (3.35) BS02 CA ? GO:0005509 ... Q99PJ1 27857071
    99255 5kj4:D (3.35) BS03 CA ? GO:0005509 ... Q99PJ1 27857071
    99256 5kj6:A (1.14) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99257 5kj6:A (1.14) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99258 5kj6:B (1.14) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99259 5kj6:B (1.14) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99260 5kj7:E (3.5) BS01 CA ? GO:0016020 ... P21707 27731796
    99261 5kj7:E (3.5) BS02 CA ? GO:0016020 ... P21707 27731796
    99262 5kj7:E (3.5) BS03 CA ? GO:0016020 ... P21707 27731796
    99263 5kj7:E (3.5) BS04 CA ? GO:0016020 ... P21707 27731796
    99264 5kj7:F (3.5) BS01 CA ? GO:0016020 ... P21707 27731796
    99265 5kj7:F (3.5) BS02 CA ? GO:0016020 ... P21707 27731796
    99266 5kj7:F (3.5) BS03 CA ? GO:0016020 ... P21707 27731796
    99267 5kj7:K (3.5) BS01 CA ? GO:0016020 ... P21707 27731796
    99268 5kj7:K (3.5) BS02 CA ? GO:0016020 ... P21707 27731796
    99269 5kj7:K (3.5) BS03 CA ? GO:0016020 ... P21707 27731796
    99270 5kj7:K (3.5) BS04 CA ? GO:0016020 ... P21707 27731796
    99271 5kj8:E (4.1) BS01 CA ? GO:0016020 ... P21707 27731796
    99272 5kj8:E (4.1) BS02 CA ? GO:0016020 ... P21707 27731796
    99273 5kj8:E (4.1) BS03 CA ? GO:0016020 ... P21707 27731796
    99274 5kj8:E (4.1) BS04 CA ? GO:0016020 ... P21707 27731796
    99275 5kj8:F (4.1) BS01 CA ? GO:0016020 ... P21707 27731796
    99276 5kj8:F (4.1) BS02 CA ? GO:0016020 ... P21707 27731796
    99277 5kj8:F (4.1) BS03 CA ? GO:0016020 ... P21707 27731796
    99278 5kj8:F (4.1) BS04 CA ? GO:0016020 ... P21707 27731796
    99279 5kj8:K (4.1) BS01 CA ? GO:0016020 ... P21707 27731796
    99280 5kj8:K (4.1) BS02 CA ? GO:0016020 ... P21707 27731796
    99281 5kj8:K (4.1) BS03 CA ? GO:0016020 ... P21707 27731796
    99282 5kj8:K (4.1) BS04 CA ? GO:0016020 ... P21707 27731796
    99283 5kja:A (2.8) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99284 5kja:B (2.8) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99285 5kja:C (2.8) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99286 5kja:D (2.8) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99287 5kja:E (2.8) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99288 5kjb:A (2.81) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99289 5kjb:B (2.81) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99290 5kjb:C (2.81) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99291 5kjb:D (2.81) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99292 5kjb:E (2.81) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99293 5kjc:A (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99294 5kjc:A (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99295 5kjc:B (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99296 5kjc:B (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99297 5kjd:A (2.75) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99298 5kjd:B (2.75) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99299 5kjd:C (2.75) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99300 5kjd:D (2.75) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99301 5kjd:E (2.75) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 27453555
    99302 5kje:A (1.26) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99303 5kje:A (1.26) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99304 5kje:B (1.26) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99305 5kje:B (1.26) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99306 5kjf:A (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99307 5kjf:A (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99308 5kjf:B (1.2) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99309 5kjf:B (1.2) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 29271062
    99310 5kjh:B (2.27) BS02 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99311 5kjh:B (2.27) BS03 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99312 5kjh:B (2.27) BS04 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99313 5kjh:B (2.27) BS05 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99314 5kjh:B (2.27) BS06 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99315 5kjh:B (2.27) BS07 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99316 5kjh:B (2.27) BS08 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99317 5kjh:B (2.27) BS09 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99318 5kji:B (2.71) BS01 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99319 5kji:B (2.71) BS02 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99320 5kji:B (2.71) BS03 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99321 5kji:B (2.71) BS04 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99322 5kji:B (2.71) BS05 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99323 5kji:B (2.71) BS06 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99324 5kji:B (2.71) BS07 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99325 5kji:B (2.71) BS08 ZN ? GO:0006338 ... G0RYC6
    G0SDW4    		 28008038
    99326 5kjk:A (1.93) BS05 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99327 5kjk:A (1.93) BS06 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99328 5kjk:A (1.93) BS07 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99329 5kjl:A (2.7) BS02 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99330 5kjl:A (2.7) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99331 5kjl:A (2.7) BS04 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99332 5kjm:A (2.19) BS03 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99333 5kjm:A (2.19) BS04 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99334 5kjm:A (2.19) BS05 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99335 5kjn:A (2.72) BS08 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99336 5kjn:A (2.72) BS09 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99337 5kjn:A (2.72) BS10 ZN 2.1.1.-
    2.1.1.354    		 GO:0000122 ... Q9NRG4 28002961
    99338 5kk0:A (2.8) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 26499794
    99339 5kk0:B (2.8) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 26499794
    99340 5kk0:C (2.8) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 26499794
    99341 5kk0:D (2.8) BS01 FE2 1.13.11.75 GO:0010436 ... P74334 26499794
    99342 5kkl:B (2.94) BS01 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    P68431    		 28008038
    99343 5kkl:B (2.94) BS02 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    P68431    		 28008038
    99344 5kkl:B (2.94) BS03 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    P68431    		 28008038
    99345 5kkl:B (2.94) BS04 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    P68431    		 28008038
    99346 5kkl:B (2.94) BS05 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    P68431    		 28008038
    99347 5kkl:B (2.94) BS06 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    P68431    		 28008038
    99348 5kkl:B (2.94) BS07 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    P68431    		 28008038
    99349 5kkl:B (2.94) BS08 ZN ? GO:0006338 ... G0RYC6
    G0SDW4
    P68431    		 28008038
    99350 5kkq:A (1.744) BS03 ZN ? N/A P49711 28529057
    99351 5kkq:A (1.744) BS04 ZN ? N/A P49711 28529057
    99352 5kkq:A (1.744) BS05 ZN ? N/A P49711 28529057
    99353 5kkq:A (1.744) BS06 ZN ? N/A P49711 28529057
    99354 5kkq:A (1.744) BS07 ZN ? N/A P49711 28529057
    99355 5kkq:D (1.744) BS03 ZN ? N/A P49711 28529057
    99356 5kkq:D (1.744) BS04 ZN ? N/A P49711 28529057
    99357 5kkq:D (1.744) BS05 ZN ? N/A P49711 28529057
    99358 5kkq:D (1.744) BS06 ZN ? N/A P49711 28529057
    99359 5kkq:D (1.744) BS07 ZN ? N/A P49711 28529057
    99360 5kl0:A (1.853) BS02 MG N/A GO:0000287 ... N/A 27567706
    99361 5kl1:B (3.701) BS02 ZN ? GO:0003723 ... P25724 27482653
    99362 5kl1:B (3.701) BS03 ZN ? GO:0003723 ... P25724 27482653
    99363 5kl2:A (1.692) BS03 ZN ? N/A P19544 27596598
    99364 5kl2:A (1.692) BS04 ZN ? N/A P19544 27596598
    99365 5kl2:A (1.692) BS05 ZN ? N/A P19544 27596598
    99366 5kl3:A (1.449) BS03 ZN ? N/A P19544 27596598
    99367 5kl3:A (1.449) BS04 ZN ? N/A P19544 27596598
    99368 5kl3:A (1.449) BS05 ZN ? N/A P19544 27596598
    99369 5kl4:A (1.783) BS03 ZN ? N/A P19544 27596598
    99370 5kl4:A (1.783) BS04 ZN ? N/A P19544 27596598
    99371 5kl4:A (1.783) BS05 ZN ? N/A P19544 27596598
    99372 5kl4:A (1.783) BS06 CA ? N/A P19544 27596598
    99373 5kl4:D (1.783) BS03 ZN ? N/A P19544 27596598
    99374 5kl4:D (1.783) BS04 ZN ? N/A P19544 27596598
    99375 5kl4:D (1.783) BS05 ZN ? N/A P19544 27596598
    99376 5kl4:D (1.783) BS06 CA ? N/A P19544 27596598
    99377 5kl5:A (2.289) BS03 ZN ? N/A P19544 27596598
    99378 5kl5:A (2.289) BS04 ZN ? N/A P19544 27596598
    99379 5kl5:A (2.289) BS05 ZN ? N/A P19544 27596598
    99380 5kl6:A (1.641) BS03 ZN ? N/A P19544 27596598
    99381 5kl6:A (1.641) BS04 ZN ? N/A P19544 27596598
    99382 5kl6:A (1.641) BS05 ZN ? N/A P19544 27596598
    99383 5kl7:A (1.579) BS03 ZN ? N/A P19544 27596598
    99384 5kl7:A (1.579) BS04 ZN ? N/A P19544 27596598
    99385 5kl7:A (1.579) BS05 ZN ? N/A P19544 27596598
    99386 5kl8:B (4.0) BS02 ZN ? GO:0003723 ... P25724 27482653
    99387 5kl8:B (4.0) BS03 ZN ? GO:0003723 ... P25724 27482653
    99388 5klb:A (2.7) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    99389 5klb:B (2.7) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    99390 5klb:C (2.7) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    99391 5klb:D (2.7) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    99392 5klg:D (3.3) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    99393 5klx:A (2.45) BS02 MG 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38    		 N/A
    99394 5klx:B (2.45) BS02 MG 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38    		 N/A
    99395 5klx:D (2.45) BS03 MG 5.2.1.8 GO:0003755 ... Q12306
    Q3JK38    		 N/A
    99396 5kmh:A (3.2) BS01 CA ? GO:0001518 ... A8EVM5 27556947
    99397 5kn0:A (2.729) BS01 CA ? GO:0005509 ... Q05JF3 27649144
    99398 5kn0:A (2.729) BS02 CA ? GO:0005509 ... Q05JF3 27649144
    99399 5kn0:A (2.729) BS03 CA ? GO:0005509 ... Q05JF3 27649144
    99400 5kn0:A (2.729) BS04 CA ? GO:0005509 ... Q05JF3 27649144
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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