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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    99001 5k8q:A (1.739) BS02 CA ? GO:0000086 ... P0DP23 27563101
    99002 5k8q:A (1.739) BS03 CA ? GO:0000086 ... P0DP23 27563101
    99003 5k8q:A (1.739) BS04 CA ? GO:0000086 ... P0DP23 27563101
    99004 5k8q:A (1.739) BS05 CA ? GO:0000086 ... P0DP23 27563101
    99005 5k8r:A (2.5) BS01 CA ? GO:0005509 ... Q9Y5G1 27472898
    99006 5k8r:A (2.5) BS02 CA ? GO:0005509 ... Q9Y5G1 27472898
    99007 5k8r:A (2.5) BS03 CA ? GO:0005509 ... Q9Y5G1 27472898
    99008 5k8r:A (2.5) BS04 CA ? GO:0005509 ... Q9Y5G1 27472898
    99009 5k8r:A (2.5) BS05 CA ? GO:0005509 ... Q9Y5G1 27472898
    99010 5k8r:A (2.5) BS06 CA ? GO:0005509 ... Q9Y5G1 27472898
    99011 5k8r:A (2.5) BS07 CA ? GO:0005509 ... Q9Y5G1 27472898
    99012 5k8r:A (2.5) BS08 CA ? GO:0005509 ... Q9Y5G1 27472898
    99013 5k8r:A (2.5) BS09 CA ? GO:0005509 ... Q9Y5G1 27472898
    99014 5k8t:A (1.848) BS02 MG 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A146CJG7 27915293
    99015 5k8u:A (1.601) BS02 MN 3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... A0A146CJG7 27915293
    99016 5k8y:A (2.4) BS01 CA ? N/A Q8VBX4 27903635
    99017 5k8y:B (2.4) BS01 CA ? N/A Q8VBX4 27903635
    99018 5k95:B (2.77) BS02 ZN 3.5.4.16 GO:0003933 ... Q5F9K6 28126741
    99019 5k9g:A (1.9) BS01 ZN 3.5.4.16 GO:0003933 ... Q5F9K6 28126741
    99020 5k9g:B (1.9) BS01 ZN 3.5.4.16 GO:0003933 ... Q5F9K6 28126741
    99021 5k9r:A (2.7) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 27491708
    99022 5k9r:A (2.7) BS02 MG 3.1.4.17 GO:0004114 ... Q9Y233 27491708
    99023 5k9r:B (2.7) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 27491708
    99024 5kaf:A (3.00001) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 27871088
    99025 5kaf:D (3.00001) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    99026 5kaf:a (3.00001) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 27871088
    99027 5kaf:d (3.00001) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    99028 5kai:A (2.80001) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 27871088
    99029 5kai:D (2.80001) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    99030 5kai:a (2.80001) BS02 FE2 1.10.3.9 GO:0005506 ... P0A444 27871088
    99031 5kai:d (2.80001) BS01 FE2 1.10.3.9 GO:0005506 ... Q8CM25 27871088
    99032 5kal:A (2.75) BS03 MG 2.7.7.52 GO:0000166 ... Q381M1 27744351
    99033 5kal:B (2.75) BS03 MG 2.7.7.52 GO:0000166 ... Q381M1 27744351
    99034 5kal:B (2.75) BS04 MG 2.7.7.52 GO:0000166 ... Q381M1 27744351
    99035 5kam:A (2.481) BS02 MG 2.4.2.8 GO:0000166 ... Q07010 27786284
    99036 5kam:C (2.481) BS02 MG 2.4.2.8 GO:0000166 ... Q07010 27786284
    99037 5kap:A (2.95) BS02 MG 2.4.2.8 GO:0000166 ... Q07010 27786284
    99038 5kap:B (2.95) BS02 MG 2.4.2.8 GO:0000166 ... Q07010 27786284
    99039 5kap:B (2.95) BS03 MG 2.4.2.8 GO:0000166 ... Q07010 27786284
    99040 5kar:A (1.142) BS01 ZN 3.1.4.- GO:0004767 ... P58242 27687724
    99041 5kar:A (1.142) BS02 ZN 3.1.4.- GO:0004767 ... P58242 27687724
    99042 5kas:A (1.619) BS01 ZN 3.1.4.- GO:0004767 ... P58242 27687724
    99043 5kas:A (1.619) BS02 ZN 3.1.4.- GO:0004767 ... P58242 27687724
    99044 5kas:A (1.619) BS03 ZN 3.1.4.- GO:0004767 ... P58242 27687724
    99045 5kay:A (1.8) BS01 ZN N/A GO:0005198 ... N/A 27358168
    99046 5kay:B (1.8) BS01 ZN N/A GO:0005198 ... N/A 27358168
    99047 5kb0:A (2.13) BS01 ZN N/A N/A N/A 27532255
    99048 5kb1:A (2.09) BS01 ZN N/A N/A N/A 27532255
    99049 5kb2:A (1.89) BS01 ZN N/A N/A N/A 27532255
    99050 5kbd:A (2.8) BS02 ZN ? GO:0000976 ... O15350 N/A
    99051 5kbd:B (2.8) BS02 ZN ? GO:0000976 ... O15350 N/A
    99052 5kbe:A (2.5) BS01 ZN ? N/A Q43965 27362503
    99053 5kbe:B (2.5) BS01 ZN ? N/A Q43965 27362503
    99054 5kbg:A (2.8) BS01 ZN ? N/A Q43965 27362503
    99055 5kbg:B (2.8) BS01 ZN ? N/A Q43965 27362503
    99056 5kbh:A (2.55) BS01 ZN ? N/A Q43965 27362503
    99057 5kbh:B (2.55) BS01 ZN ? N/A Q43965 27362503
    99058 5kbi:A (2.9) BS01 ZN ? N/A Q43965 27362503
    99059 5kbi:B (2.9) BS01 ZN ? N/A Q43965 27362503
    99060 5kbk:A (1.411) BS01 CU1 1.15.1.1 GO:0005507 ... Q5AD07 27535222
    99061 5kbl:A (1.414) BS01 CU1 1.15.1.1 GO:0005507 ... Q5AD07 27535222
    99062 5kbm:A (1.416) BS01 CU1 1.15.1.1 GO:0005507 ... Q5AD07 27535222
    99063 5kc8:A (1.751) BS01 CA ? N/A O43424 27418511
    99064 5kca:A (3.1) BS01 CA ? N/A O43424
    P23435
    27418511
    99065 5kcp:A (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28025168
    99066 5kcp:A (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28025168
    99067 5kcp:B (1.1) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28025168
    99068 5kcp:B (1.1) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28025168
    99069 5kcr:19 (3.6) BS02 ZN ? GO:0002181 ... P0A7Q6 27330110
    99070 5kcz:A (1.14) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28025168
    99071 5kcz:A (1.14) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28025168
    99072 5kcz:B (1.14) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 28025168
    99073 5kcz:B (1.14) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 28025168
    99074 5kd2:A (2.15) BS01 ZN ? N/A Q89ZX7 28096352
    99075 5kd5:A (1.65) BS01 ZN ? N/A Q89ZX7 28096352
    99076 5kd8:A (2.3) BS01 ZN ? N/A Q89ZX7 28096352
    99077 5kdf:A (2.45) BS02 CA 3.6.1.1 GO:0000287 ... P9WI55 27622287
    99078 5kdf:A (2.45) BS03 CA 3.6.1.1 GO:0000287 ... P9WI55 27622287
    99079 5kdj:A (2.15) BS01 ZN ? N/A A0A0H2YN38 28096352
    99080 5kdj:B (2.15) BS01 ZN ? N/A A0A0H2YN38 28096352
    99081 5kdl:A (2.665) BS01 MG ? GO:0000287 ... P10824 27462082
    99082 5kdl:B (2.665) BS01 MG ? GO:0000287 ... P10824 27462082
    99083 5kdn:A (1.66) BS01 ZN ? N/A A0A0H2YN38 28096352
    99084 5kdr:B (2.6) BS02 ZN 2.1.3.15 GO:0003989 ... Q2FXM6 27471863
    99085 5kds:A (1.6) BS03 ZN ? N/A A0A0H2YN38 28096352
    99086 5kdu:A (2.0) BS02 ZN ? N/A A0A0H2YN38 28096352
    99087 5kdv:A (1.93) BS01 ZN 3.4.24.- GO:0005576 ... Q9I5W4 28096352
    99088 5kdw:A (1.85) BS01 ZN 3.4.24.- GO:0005576 ... Q9I5W4 28096352
    99089 5kdw:B (1.85) BS01 ZN 3.4.24.- GO:0005576 ... Q9I5W4 28096352
    99090 5kdx:A (2.4) BS01 ZN 3.4.24.- GO:0005576 ... Q9I5W4 28096352
    99091 5kdx:B (2.4) BS01 ZN 3.4.24.- GO:0005576 ... Q9I5W4 28096352
    99092 5ke6:A (1.99) BS03 ZN ? N/A Q60793 27596594
    99093 5ke6:A (1.99) BS04 ZN ? N/A Q60793 27596594
    99094 5ke6:A (1.99) BS05 ZN ? N/A Q60793 27596594
    99095 5ke7:A (2.06) BS03 ZN ? N/A Q60793 27596594
    99096 5ke7:A (2.06) BS04 ZN ? N/A Q60793 27596594
    99097 5ke7:A (2.06) BS05 ZN ? N/A Q60793 27596594
    99098 5ke8:A (2.45) BS03 ZN ? N/A Q60793 27596594
    99099 5ke8:A (2.45) BS04 ZN ? N/A Q60793 27596594
    99100 5ke8:A (2.45) BS05 ZN ? N/A Q60793 27596594
    99101 5ke9:A (2.336) BS03 ZN ? N/A Q60793 27596594
    99102 5ke9:A (2.336) BS04 ZN ? N/A Q60793 27596594
    99103 5ke9:A (2.336) BS05 ZN ? N/A Q60793 27596594
    99104 5kea:A (2.458) BS03 ZN ? N/A Q60793 27596594
    99105 5kea:A (2.458) BS04 ZN ? N/A Q60793 27596594
    99106 5kea:A (2.458) BS05 ZN ? N/A Q60793 27596594
    99107 5keb:A (2.453) BS03 ZN ? N/A Q60793 27596594
    99108 5keb:A (2.453) BS04 ZN ? N/A Q60793 27596594
    99109 5keb:A (2.453) BS05 ZN ? N/A Q60793 27596594
    99110 5kee:A (1.5) BS01 CA 3.1.31.1 N/A P00644 N/A
    99111 5kef:B (2.23) BS01 ZN N/A N/A N/A 28034013
    99112 5keg:A (2.2) BS02 ZN 3.5.4.38 GO:0000932 ... P31941 28452355
    99113 5keu:A (1.85) BS01 MG ? GO:0005737 ... Q13IQ2 N/A
    99114 5keu:B (1.85) BS01 MG ? GO:0005737 ... Q13IQ2 N/A
    99115 5kez:A (1.83) BS02 CA 3.2.1.1 GO:0003824 ... P04746 28262556
    99116 5kf0:A (1.7) BS02 MG ? GO:0000166 ... A4JLJ7 N/A
    99117 5kfa:A (1.51) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99118 5kfb:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99119 5kfb:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99120 5kfb:A (1.55) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99121 5kfc:A (1.5) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99122 5kfc:A (1.5) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99123 5kfc:A (1.5) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99124 5kfd:A (1.65) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99125 5kfd:A (1.65) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99126 5kfd:A (1.65) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99127 5kfe:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99128 5kfe:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99129 5kfe:A (1.55) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99130 5kff:A (1.7) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99131 5kff:A (1.7) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99132 5kfg:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99133 5kfg:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99134 5kfg:A (1.55) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99135 5kfh:A (1.72) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99136 5kfh:A (1.72) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99137 5kfh:A (1.72) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99138 5kfi:A (1.65) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99139 5kfi:A (1.65) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99140 5kfi:A (1.65) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99141 5kfj:A (1.7) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99142 5kfj:A (1.7) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99143 5kfj:A (1.7) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99144 5kfk:A (1.7) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99145 5kfk:A (1.7) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99146 5kfk:A (1.7) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99147 5kfl:A (1.65) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99148 5kfl:A (1.65) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99149 5kfm:A (1.6) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99150 5kfn:A (1.45) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99151 5kfn:A (1.45) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99152 5kfn:A (1.45) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99153 5kfo:A (1.52) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99154 5kfo:A (1.52) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99155 5kfo:A (1.52) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99156 5kfp:A (1.7) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99157 5kfp:A (1.7) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99158 5kfp:A (1.7) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99159 5kfq:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99160 5kfq:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99161 5kfq:A (1.55) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99162 5kfr:A (1.75) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99163 5kfr:A (1.75) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99164 5kfs:A (1.46) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99165 5kft:A (1.52) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99166 5kft:A (1.52) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99167 5kft:A (1.52) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99168 5kfu:A (1.55) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99169 5kfu:A (1.55) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99170 5kfu:A (1.55) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99171 5kfv:A (1.6) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99172 5kfv:A (1.6) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99173 5kfv:A (1.6) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99174 5kfw:A (1.62) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99175 5kfw:A (1.62) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99176 5kfw:A (1.62) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99177 5kfx:A (1.52) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99178 5kfx:A (1.52) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99179 5kfx:A (1.52) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99180 5kfy:A (1.7) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99181 5kfy:A (1.7) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99182 5kfz:A (1.44) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99183 5kfz:A (1.44) BS05 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99184 5kg0:A (1.6) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99185 5kg0:A (1.6) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99186 5kg1:A (1.62) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99187 5kg1:A (1.62) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99188 5kg2:A (1.6) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99189 5kg2:A (1.6) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99190 5kg3:A (1.7) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99191 5kg3:A (1.7) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99192 5kg4:A (1.6) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99193 5kg4:A (1.6) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99194 5kg5:A (1.6) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99195 5kg5:A (1.6) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99196 5kg6:A (1.55) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99197 5kg6:A (1.55) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99198 5kg7:A (1.75) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99199 5kg7:A (1.75) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 27284197
    99200 5kgl:A (2.45) BS01 MN 5.4.2.12 GO:0003824 ... G5EFZ1 28368002

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218