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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    98801 5k2m:J (2.18) BS03 MG ? GO:0003824 ... Q5JFW0 27566549
    98802 5k2o:A (2.873) BS01 MG 2.2.1.6 GO:0000287 ... P17597 28137884
    98803 5k31:A (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    98804 5k31:B (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    98805 5k31:C (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    98806 5k31:D (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    98807 5k31:E (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    98808 5k31:F (2.2) BS01 CA ? GO:0005201 ... P02452 28281531
    98809 5k32:A (1.99) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29502405
    98810 5k32:B (1.99) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 29502405
    98811 5k36:K (3.1) BS02 ZN 3.1.13.-
    3.1.26.-    		 GO:0000049 ... Q08162 27818140
    98812 5k39:B (1.98) BS01 CA ? GO:0000272 ... A3DGE8 27924829
    98813 5k39:B (1.98) BS02 CA ? GO:0000272 ... A3DGE8 27924829
    98814 5k3k:A (1.644) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98815 5k3k:A (1.644) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98816 5k3k:A (1.644) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98817 5k3q:A (1.8) BS01 ZN 2.3.2.27 GO:0008270 ... Q0PF16 27402535
    98818 5k3q:A (1.8) BS02 ZN 2.3.2.27 GO:0008270 ... Q0PF16 27402535
    98819 5k3q:B (1.8) BS01 ZN 2.3.2.27 GO:0008270 ... Q0PF16 27402535
    98820 5k3q:B (1.8) BS02 ZN 2.3.2.27 GO:0008270 ... Q0PF16 27402535
    98821 5k3q:C (1.8) BS01 ZN 2.3.2.27 GO:0008270 ... Q0PF16 27402535
    98822 5k3q:C (1.8) BS02 ZN 2.3.2.27 GO:0008270 ... Q0PF16 27402535
    98823 5k3q:D (1.8) BS01 ZN 2.3.2.27 GO:0008270 ... Q0PF16 27402535
    98824 5k3q:D (1.8) BS02 ZN 2.3.2.27 GO:0008270 ... Q0PF16 27402535
    98825 5k3s:A (2.873) BS01 MG 2.2.1.6 GO:0000287 ... P17597 28137884
    98826 5k48:A (1.744) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29271657
    98827 5k48:A (1.744) BS03 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29271657
    98828 5k48:B (1.744) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29271657
    98829 5k48:B (1.744) BS03 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 29271657
    98830 5k4l:A (3.179) BS02 ZN 1.14.11.67 GO:0003677 ... P29375 27499454
    98831 5k4l:A (3.179) BS03 ZN 1.14.11.67 GO:0003677 ... P29375 27499454
    98832 5k4l:B (3.179) BS02 ZN 1.14.11.67 GO:0003677 ... P29375 27499454
    98833 5k4l:B (3.179) BS03 ZN 1.14.11.67 GO:0003677 ... P29375 27499454
    98834 5k4m:A (1.98) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    98835 5k4m:A (1.98) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 N/A
    98836 5k4m:A (1.98) BS03 MG 3.5.2.6 GO:0008270 ... C7C422 N/A
    98837 5k4p:A (1.318) BS01 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 27655155
    98838 5k4p:A (1.318) BS02 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 27655155
    98839 5k4p:A (1.318) BS03 ZN 2.7.-.- GO:0016772 ... A0A0R6L508 27655155
    98840 5k53:A (1.8) BS01 FE 4.1.99.5 GO:0016829 ... A0A1D5B390 27329814
    98841 5k53:A (1.8) BS02 FE 4.1.99.5 GO:0016829 ... A0A1D5B390 27329814
    98842 5k53:B (1.8) BS01 FE 4.1.99.5 GO:0016829 ... A0A1D5B390 27329814
    98843 5k53:B (1.8) BS02 FE 4.1.99.5 GO:0016829 ... A0A1D5B390 27329814
    98844 5k5h:A (3.108) BS03 ZN ? N/A P49711 28529057
    98845 5k5h:A (3.108) BS04 ZN ? N/A P49711 28529057
    98846 5k5h:A (3.108) BS05 ZN ? N/A P49711 28529057
    98847 5k5h:A (3.108) BS06 ZN ? N/A P49711 28529057
    98848 5k5i:A (2.19) BS03 ZN ? N/A P49711 28529057
    98849 5k5i:A (2.19) BS04 ZN ? N/A P49711 28529057
    98850 5k5i:A (2.19) BS05 ZN ? N/A P49711 28529057
    98851 5k5i:A (2.19) BS06 ZN ? N/A P49711 28529057
    98852 5k5i:A (2.19) BS07 ZN ? N/A P49711 28529057
    98853 5k5j:A (2.287) BS03 ZN ? N/A P49711 28529057
    98854 5k5j:A (2.287) BS04 ZN ? N/A P49711 28529057
    98855 5k5j:A (2.287) BS05 ZN ? N/A P49711 28529057
    98856 5k5j:A (2.287) BS06 ZN ? N/A P49711 28529057
    98857 5k5k:A (1.796) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98858 5k5k:A (1.796) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98859 5k5k:A (1.796) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98860 5k5l:E (3.125) BS03 ZN ? N/A P49711 28529057
    98861 5k5l:E (3.125) BS04 ZN ? N/A P49711 28529057
    98862 5k5l:F (3.125) BS02 ZN ? N/A P49711 28529057
    98863 5k5l:F (3.125) BS03 ZN ? N/A P49711 28529057
    98864 5k5l:G (3.125) BS04 ZN ? N/A P49711 28529057
    98865 5k5l:G (3.125) BS05 ZN ? N/A P49711 28529057
    98866 5k5l:G (3.125) BS06 ZN ? N/A P49711 28529057
    98867 5k5m:A (2.01) BS01 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... A0A097PIE2 27500641
    98868 5k5m:A (2.01) BS02 ZN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0003968 ... A0A097PIE2 27500641
    98869 5k5s:A (2.6) BS02 CA ? GO:0004930 ... P41180 27434672
    98870 5k5s:A (2.6) BS03 CA ? GO:0004930 ... P41180 27434672
    98871 5k5s:A (2.6) BS04 CA ? GO:0004930 ... P41180 27434672
    98872 5k5s:B (2.6) BS01 CA ? GO:0004930 ... P41180 27434672
    98873 5k5s:B (2.6) BS03 CA ? GO:0004930 ... P41180 27434672
    98874 5k5s:B (2.6) BS04 CA ? GO:0004930 ... P41180 27434672
    98875 5k5t:A (3.1) BS01 CA ? GO:0004930 ... P41180 27434672
    98876 5k5w:A (2.591) BS01 ZN ? N/A Q0ZAI6 27911826
    98877 5k5w:B (2.591) BS01 ZN ? N/A Q0ZAI6 27911826
    98878 5k5z:A (2.369) BS02 MG ? GO:0046872 ... O93708 26339031
    98879 5k5z:D (2.369) BS03 MG ? GO:0046872 ... O93708 26339031
    98880 5k6j:A (1.86) BS01 ZN 3.1.4.53 GO:0004114 ... Q07343 N/A
    98881 5k6q:A (2.952) BS01 MG 2.2.1.6 GO:0000287 ... P17597 28485824
    98882 5k6r:A (2.734) BS01 MG 2.2.1.6 GO:0000287 ... P17597 28137884
    98883 5k6t:A (2.763) BS01 MG 2.2.1.6 GO:0000287 ... P17597 28137884
    98884 5k6v:A (3.208) BS01 ZN ? N/A Q3UH53 27644106
    98885 5k6v:A (3.208) BS02 ZN ? N/A Q3UH53 27644106
    98886 5k73:A (2.08) BS01 FE2 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98887 5k73:A (2.08) BS02 ZN 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98888 5k73:B (2.08) BS01 FE2 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98889 5k73:B (2.08) BS02 ZN 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98890 5k73:C (2.08) BS01 FE2 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98891 5k73:C (2.08) BS02 ZN 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98892 5k73:D (2.08) BS01 FE2 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98893 5k73:D (2.08) BS02 ZN 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98894 5k73:E (2.08) BS01 FE2 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98895 5k73:E (2.08) BS02 ZN 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98896 5k77:A (2.17) BS03 ZN 3.1.4.- GO:0000375 ... C4M1P9 27930312
    98897 5k77:A (2.17) BS04 FE2 3.1.4.- GO:0000375 ... C4M1P9 27930312
    98898 5k77:B (2.17) BS03 FE2 3.1.4.- GO:0000375 ... C4M1P9 27930312
    98899 5k77:B (2.17) BS04 ZN 3.1.4.- GO:0000375 ... C4M1P9 27930312
    98900 5k77:C (2.17) BS03 ZN 3.1.4.- GO:0000375 ... C4M1P9 27930312
    98901 5k77:C (2.17) BS04 FE2 3.1.4.- GO:0000375 ... C4M1P9 27930312
    98902 5k77:D (2.17) BS03 FE2 3.1.4.- GO:0000375 ... C4M1P9 27930312
    98903 5k77:D (2.17) BS04 ZN 3.1.4.- GO:0000375 ... C4M1P9 27930312
    98904 5k77:E (2.17) BS03 FE2 3.1.4.- GO:0000375 ... C4M1P9 27930312
    98905 5k77:E (2.17) BS04 ZN 3.1.4.- GO:0000375 ... C4M1P9 27930312
    98906 5k78:A (2.64) BS01 FE2 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98907 5k78:A (2.64) BS02 ZN 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98908 5k78:B (2.64) BS01 FE2 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98909 5k78:B (2.64) BS02 ZN 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98910 5k78:C (2.64) BS03 FE2 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98911 5k78:C (2.64) BS04 ZN 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98912 5k78:D (2.64) BS03 FE2 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98913 5k78:D (2.64) BS04 ZN 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98914 5k78:E (2.64) BS01 FE2 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98915 5k78:E (2.64) BS02 ZN 3.1.4.- GO:0000375 ... C4M1P9 N/A
    98916 5k7a:A (1.5) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98917 5k7a:A (1.5) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98918 5k7a:A (1.5) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98919 5k7j:A (1.39) BS01 ZN 4.1.1.48 GO:0000162 ... Q06121 27358168
    98920 5k7j:B (1.39) BS01 ZN 4.1.1.48 GO:0000162 ... Q06121 27358168
    98921 5k7r:A (1.7) BS01 CA 3.4.21.4 GO:0004175 ... P00760 28192420
    98922 5k7r:A (1.7) BS02 CA 3.4.21.4 GO:0004175 ... P00760 28192420
    98923 5k7s:A (1.6) BS01 CA 3.4.21.64 GO:0004252 ... P06873 28192420
    98924 5k7s:A (1.6) BS02 CA 3.4.21.64 GO:0004252 ... P06873 28192420
    98925 5k7t:A (2.5) BS01 CA 3.4.24.27 GO:0004222 ... P00800 28192420
    98926 5k7t:A (2.5) BS02 CA 3.4.24.27 GO:0004222 ... P00800 28192420
    98927 5k7t:A (2.5) BS03 CA 3.4.24.27 GO:0004222 ... P00800 28192420
    98928 5k7t:A (2.5) BS04 CA 3.4.24.27 GO:0004222 ... P00800 28192420
    98929 5k7t:A (2.5) BS05 ZN 3.4.24.27 GO:0004222 ... P00800 28192420
    98930 5k7x:A (2.803) BS04 MG 6.3.4.4 GO:0000166 ... O58187 N/A
    98931 5k7x:B (2.803) BS04 MG 6.3.4.4 GO:0000166 ... O58187 N/A
    98932 5k7x:C (2.803) BS04 MG 6.3.4.4 GO:0000166 ... O58187 N/A
    98933 5k7x:D (2.803) BS04 MG 6.3.4.4 GO:0000166 ... O58187 N/A
    98934 5k7x:E (2.803) BS04 MG 6.3.4.4 GO:0000166 ... O58187 N/A
    98935 5k7x:F (2.803) BS04 MG 6.3.4.4 GO:0000166 ... O58187 N/A
    98936 5k81:A (2.006) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98937 5k81:B (2.006) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98938 5k81:C (2.006) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98939 5k81:D (2.006) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98940 5k81:E (2.006) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98941 5k81:F (2.006) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98942 5k82:A (2.913) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98943 5k82:B (2.913) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98944 5k82:C (2.913) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98945 5k82:D (2.913) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98946 5k83:A (2.39) BS02 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98947 5k83:B (2.39) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98948 5k83:C (2.39) BS02 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98949 5k83:D (2.39) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98950 5k83:E (2.39) BS02 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98951 5k83:F (2.39) BS01 ZN 3.5.4.-
    3.5.4.38    		 GO:0003824 ... M1GSK9 27480941
    98952 5k84:A (1.78) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98953 5k84:A (1.78) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98954 5k84:A (1.78) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98955 5k89:A (2.249) BS01 CA ? GO:0005509 ... P23297 28368280
    98956 5k89:A (2.249) BS02 CA ? GO:0005509 ... P23297 28368280
    98957 5k89:C (2.249) BS01 CA ? GO:0005509 ... P23297 28368280
    98958 5k89:C (2.249) BS02 CA ? GO:0005509 ... P23297 28368280
    98959 5k89:H (2.249) BS01 CA ? GO:0005509 ... P23297 28368280
    98960 5k89:H (2.249) BS02 CA ? GO:0005509 ... P23297 28368280
    98961 5k8c:A (1.85) BS03 ZN 1.1.3.48 GO:0004022 ... Q8EEB0 27275764
    98962 5k8d:A (4.19) BS01 CA ? GO:0005507 ... P00451 28397397
    98963 5k8d:A (4.19) BS02 CA ? GO:0005507 ... P00451 28397397
    98964 5k8d:A (4.19) BS03 CA ? GO:0005507 ... P00451 28397397
    98965 5k8d:A (4.19) BS04 CU ? GO:0005507 ... P00451 28397397
    98966 5k8d:B (4.19) BS01 CU ? GO:0005507 ... P00451
    P01857    		 28397397
    98967 5k8f:C (2.45) BS03 MG 6.2.1.1 GO:0003987 ... J9VFT1 N/A
    98968 5k8g:A (2.0) BS01 CA ? N/A A1YIY3 28808685
    98969 5k8g:A (2.0) BS02 CA ? N/A A1YIY3 28808685
    98970 5k8g:A (2.0) BS03 CA ? N/A A1YIY3 28808685
    98971 5k8g:A (2.0) BS04 CA ? N/A A1YIY3 28808685
    98972 5k8g:A (2.0) BS05 CA ? N/A A1YIY3 28808685
    98973 5k8g:A (2.0) BS06 CA ? N/A A1YIY3 28808685
    98974 5k8g:A (2.0) BS07 CA ? N/A A1YIY3 28808685
    98975 5k8g:A (2.0) BS08 CA ? N/A A1YIY3 28808685
    98976 5k8g:A (2.0) BS09 CA ? N/A A1YIY3 28808685
    98977 5k8g:A (2.0) BS10 CA ? N/A A1YIY3 28808685
    98978 5k8g:A (2.0) BS11 CA ? N/A A1YIY3 28808685
    98979 5k8g:A (2.0) BS12 CA ? N/A A1YIY3 28808685
    98980 5k8g:A (2.0) BS13 CA ? N/A A1YIY3 28808685
    98981 5k8g:A (2.0) BS14 CA ? N/A A1YIY3 28808685
    98982 5k8i:A (1.694) BS02 MN 3.4.21.91
    3.6.1.15
    3.6.4.13    		 GO:0004386 ... A0A146CJG7 27915293
    98983 5k8k:A (2.55) BS01 MN 3.6.1.54 GO:0005737 ... P44046 27780190
    98984 5k8k:A (2.55) BS02 MN 3.6.1.54 GO:0005737 ... P44046 27780190
    98985 5k8o:A (2.893) BS01 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98986 5k8o:B (2.893) BS01 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98987 5k8o:C (2.893) BS01 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98988 5k8o:D (2.893) BS02 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98989 5k8o:E (2.893) BS02 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98990 5k8o:F (2.893) BS01 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98991 5k8o:G (2.893) BS02 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98992 5k8o:H (2.893) BS02 MN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98993 5k8p:A (2.2) BS01 ZN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98994 5k8p:B (2.2) BS01 ZN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98995 5k8p:C (2.2) BS01 ZN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98996 5k8p:D (2.2) BS01 ZN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98997 5k8p:E (2.2) BS01 ZN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98998 5k8p:F (2.2) BS02 ZN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    98999 5k8p:G (2.2) BS01 ZN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    99000 5k8p:H (2.2) BS01 ZN 3.5.99.8 GO:0016787 ... D3WZ85 27694799
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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