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BioLiP
Download all results in tab-seperated text for 197122 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    98601 5jwb:H (2.7) BS04 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98602 5jwb:H (2.7) BS05 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98603 5jwb:H (2.7) BS06 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98604 5jwc:A (2.051) BS02 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98605 5jwc:A (2.051) BS03 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98606 5jwc:A (2.051) BS04 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98607 5jwc:A (2.051) BS05 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98608 5jwc:H (2.051) BS05 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98609 5jwc:H (2.051) BS06 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98610 5jwc:H (2.051) BS07 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98611 5jwc:H (2.051) BS08 MG 1.6.5.9 GO:0000166 ... Q8I302 28195463
    98612 5jwk:A (2.3) BS02 FE2 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 N/A
    98613 5jwl:A (2.4) BS02 ZN 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 N/A
    98614 5jwp:A (2.1) BS03 ZN 1.14.11.30
    1.14.11.n4
    GO:0003714 ... Q9NWT6 27815979
    98615 5jwz:A (1.695) BS01 CA ? N/A G2NK78 N/A
    98616 5jwz:A (1.695) BS02 CA ? N/A G2NK78 N/A
    98617 5jwz:B (1.695) BS01 CA ? N/A G2NK78 N/A
    98618 5jx2:A (2.0504) BS01 CA ? GO:0005886 ... Q08255 27536942
    98619 5jx9:A (1.599) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98620 5jx9:A (1.599) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98621 5jx9:A (1.599) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98622 5jxa:L (1.6) BS01 CU N/A N/A N/A 27477385
    98623 5jxa:L (1.6) BS02 CU N/A N/A N/A 27477385
    98624 5jxg:A (1.8) BS01 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    98625 5jxg:A (1.8) BS02 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    98626 5jxg:A (1.8) BS03 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    98627 5jxh:A (2.0) BS02 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    98628 5jxh:A (2.0) BS03 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    98629 5jxh:A (2.0) BS04 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    98630 5jxi:A (2.0) BS01 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    98631 5jxj:A (2.0) BS02 CA 3.4.21.75 GO:0004252 ... P09958 27647913
    98632 5jxn:E (1.38) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 27933956
    98633 5jxn:E (1.38) BS02 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98634 5jxn:E (1.38) BS03 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98635 5jxn:E (1.38) BS04 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98636 5jxn:E (1.38) BS05 CA 3.4.24.27 GO:0004222 ... P00800 27933956
    98637 5jxp:A (2.5) BS01 CA 3.4.14.- GO:0004177 ... F8WQK8 28588213
    98638 5jxq:A (1.2) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 27501913
    98639 5jxs:A (2.8) BS03 MG 2.7.7.48
    3.4.22.28
    3.4.22.46
    3.6.1.15
    GO:0003723 ... P03311 27194768
    98640 5jxz:A (1.88) BS01 MG 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    98641 5jxz:B (1.88) BS01 MG 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    98642 5jy4:A (2.11) BS01 MG 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    98643 5jy4:B (2.11) BS01 MG 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    98644 5jy6:A (2.0) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 27875551
    98645 5jy6:B (2.0) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 27875551
    98646 5jy6:C (2.0) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 27875551
    98647 5jy6:D (2.0) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 27875551
    98648 5jy7:A (3.6) BS01 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... A0R6E0 30877199
    98649 5jy7:B (3.6) BS01 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... A0R6E0 30877199
    98650 5jy7:C (3.6) BS01 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... A0R6E0 30877199
    98651 5jy7:D (3.6) BS01 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... A0R6E0 30877199
    98652 5jy7:E (3.6) BS01 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... A0R6E0 30877199
    98653 5jy7:F (3.6) BS01 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... A0R6E0 30877199
    98654 5jy7:G (3.6) BS01 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... A0R6E0 30877199
    98655 5jy7:H (3.6) BS01 CA 3.2.1.1
    5.4.99.16
    GO:0000023 ... A0R6E0 30877199
    98656 5jy8:A (2.942) BS01 FE 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    98657 5jy8:A (2.942) BS02 FE 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    98658 5jy8:B (2.942) BS01 FE 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    98659 5jy8:B (2.942) BS02 FE 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    98660 5jy8:B (2.942) BS03 FE 5.4.4.2 GO:0000287 ... P0AEJ3 27373320
    98661 5jy9:A (2.162) BS01 FE2 ? GO:0000162 ... A1JTF3 27373320
    98662 5jy9:B (2.162) BS01 FE2 ? GO:0000162 ... A1JTF3 27373320
    98663 5jyd:A (1.65) BS02 MG ? GO:0016491 ... B4EEE3 N/A
    98664 5jyd:B (1.65) BS02 MG ? GO:0016491 ... B4EEE3 N/A
    98665 5jyd:C (1.65) BS02 MG ? GO:0016491 ... B4EEE3 N/A
    98666 5jyd:D (1.65) BS02 MG ? GO:0016491 ... B4EEE3 N/A
    98667 5jyd:E (1.65) BS02 MG ? GO:0016491 ... B4EEE3 N/A
    98668 5jyd:F (1.65) BS02 MG ? GO:0016491 ... B4EEE3 N/A
    98669 5jyd:G (1.65) BS02 MG ? GO:0016491 ... B4EEE3 N/A
    98670 5jyd:H (1.65) BS02 MG ? GO:0016491 ... B4EEE3 N/A
    98671 5jye:A (2.23) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 27875551
    98672 5jye:C (2.23) BS02 MG 1.2.1.- GO:0000166 ... Q9ALW2 27875551
    98673 5jyi:A (1.914) BS01 CA 3.4.21.4 GO:0004252 ... P00760 N/A
    98674 5jym:A (2.45) BS01 CA ? GO:0005509 ... P22223 28045038
    98675 5jym:A (2.45) BS02 CA ? GO:0005509 ... P22223 28045038
    98676 5jym:A (2.45) BS03 CA ? GO:0005509 ... P22223 28045038
    98677 5jym:C (2.45) BS01 CA ? GO:0005509 ... P22223 28045038
    98678 5jym:C (2.45) BS02 CA ? GO:0005509 ... P22223 28045038
    98679 5jym:C (2.45) BS03 CA ? GO:0005509 ... P22223 28045038
    98680 5jys:A (1.901) BS01 MG ? GO:0005576 ... P47032 27344972
    98681 5jyy:A (2.1) BS01 CA 3.2.1.18 GO:0004308 ... R4NFR6 27341624
    98682 5jz6:A (2.354) BS01 MN 1.14.11.16 GO:0018193 ... Q12797 31659163
    98683 5jz8:A (2.095) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 31659163
    98684 5jza:A (2.14) BS01 MN 1.14.11.16 GO:0018193 ... Q12797 31659163
    98685 5jzd:A (2.303) BS02 MG 5.4.4.2 GO:0000287 ... P0AEJ2 27373320
    98686 5jzd:B (2.303) BS02 MG 5.4.4.2 GO:0000287 ... P0AEJ2 27373320
    98687 5jzj:A (1.71) BS01 MG 2.7.11.1 GO:0004672 ... O15075 27545623
    98688 5jzj:B (1.71) BS01 MG 2.7.11.1 GO:0004672 ... O15075 27545623
    98689 5jzu:A (2.5) BS02 MN 1.14.11.16 GO:0018193 ... Q12797 31659163
    98690 5k02:A (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98691 5k02:A (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98692 5k02:B (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98693 5k02:B (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98694 5k02:C (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98695 5k02:C (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98696 5k02:D (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98697 5k02:D (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98698 5k02:E (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98699 5k02:E (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98700 5k02:F (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98701 5k02:F (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98702 5k02:G (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98703 5k02:G (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98704 5k02:H (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98705 5k02:H (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98706 5k02:I (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98707 5k02:I (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98708 5k02:J (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98709 5k02:J (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98710 5k02:K (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98711 5k02:K (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98712 5k02:L (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98713 5k02:L (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98714 5k02:M (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98715 5k02:M (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98716 5k02:N (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98717 5k02:N (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98718 5k02:O (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98719 5k02:O (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98720 5k02:P (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98721 5k02:P (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98722 5k02:Q (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98723 5k02:Q (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98724 5k02:R (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98725 5k02:R (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98726 5k02:S (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98727 5k02:S (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98728 5k02:T (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98729 5k02:T (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98730 5k02:U (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98731 5k02:U (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98732 5k02:V (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98733 5k02:V (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98734 5k02:W (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98735 5k02:W (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98736 5k02:X (1.99) BS01 CU 1.15.1.1 GO:0000302 ... P00441 27667694
    98737 5k02:X (1.99) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 27667694
    98738 5k0d:A (1.824) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98739 5k0d:A (1.824) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98740 5k0d:A (1.824) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98741 5k0h:A (2.2) BS01 CA 3.4.21.6 GO:0004252 ... P00742 16848746
    98742 5k0h:A (2.2) BS02 CA 3.4.21.6 GO:0004252 ... P00742 16848746
    98743 5k0k:B (2.545) BS01 MG 2.7.10.1 GO:0004672 ... Q12866 27994735
    98744 5k0l:A (2.02) BS01 MG 2.1.1.6 GO:0000287 ... P22734 27685665
    98745 5k0l:B (2.02) BS01 MG 2.1.1.6 GO:0000287 ... P22734 27685665
    98746 5k0l:C (2.02) BS01 MG 2.1.1.6 GO:0000287 ... P22734 27685665
    98747 5k0l:D (2.02) BS01 MG 2.1.1.6 GO:0000287 ... P22734 27685665
    98748 5k0n:A (1.99) BS01 MG 2.1.1.6 GO:0000287 ... P22734 27685665
    98749 5k0n:B (1.99) BS01 MG 2.1.1.6 GO:0000287 ... P22734 27685665
    98750 5k0n:C (1.99) BS01 MG 2.1.1.6 GO:0000287 ... P22734 27685665
    98751 5k0n:D (1.99) BS01 MG 2.1.1.6 GO:0000287 ... P22734 27685665
    98752 5k0w:A (2.61) BS01 ZN ? N/A Q4JRB6 27458232
    98753 5k0w:A (2.61) BS02 ZN ? N/A Q4JRB6 27458232
    98754 5k0w:B (2.61) BS01 ZN ? N/A Q4JRB6 27458232
    98755 5k0w:B (2.61) BS02 ZN ? N/A Q4JRB6 27458232
    98756 5k15:A (1.55) BS01 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98757 5k15:A (1.55) BS02 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98758 5k15:A (1.55) BS03 CU 1.10.3.2 GO:0005507 ... Q72HW2 N/A
    98759 5k16:A (2.599) BS01 ZN 3.4.19.12 GO:0004197 ... O75317 27373336
    98760 5k16:B (2.599) BS01 ZN 3.4.19.12 GO:0004197 ... O75317 27373336
    98761 5k1a:A (2.3) BS01 ZN 3.4.19.12 GO:0004843 ... O75317 27373336
    98762 5k1a:C (2.3) BS01 ZN 3.4.19.12 GO:0004843 ... O75317 27373336
    98763 5k1a:E (2.3) BS01 ZN 3.4.19.12 GO:0004843 ... O75317 27373336
    98764 5k1a:G (2.3) BS01 ZN 3.4.19.12 GO:0004843 ... O75317 27373336
    98765 5k1b:A (3.3) BS01 ZN 3.4.19.12 GO:0004197 ... O75317 27373336
    98766 5k1c:A (3.0) BS01 ZN 3.4.19.12 GO:0004197 ... O75317 27373336
    98767 5k1i:A (2.61) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 27933955
    98768 5k1i:A (2.61) BS03 MG 3.1.4.53 GO:0004114 ... Q08499 27933955
    98769 5k1i:B (2.61) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 27933955
    98770 5k1i:B (2.61) BS03 MG 3.1.4.53 GO:0004114 ... Q08499 27933955
    98771 5k1i:C (2.61) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 27933955
    98772 5k1i:D (2.61) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 27933955
    98773 5k1i:E (2.61) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 27933955
    98774 5k1i:F (2.61) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 27933955
    98775 5k1i:G (2.61) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 27933955
    98776 5k1i:H (2.61) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 27933955
    98777 5k1p:A (1.499) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 27711380
    98778 5k1s:A (2.55) BS01 ZN ? GO:0003723 ... Q1D4I2 27487931
    98779 5k1s:A (2.55) BS02 ZN ? GO:0003723 ... Q1D4I2 27487931
    98780 5k1s:B (2.55) BS01 ZN ? GO:0003723 ... Q1D4I2 27487931
    98781 5k1s:B (2.55) BS02 ZN ? GO:0003723 ... Q1D4I2 27487931
    98782 5k1s:C (2.55) BS01 ZN ? GO:0003723 ... Q1D4I2 27487931
    98783 5k1s:D (2.55) BS01 ZN ? GO:0003723 ... Q1D4I2 27487931
    98784 5k1s:D (2.55) BS02 ZN ? GO:0003723 ... Q1D4I2 27487931
    98785 5k1v:A (2.897) BS01 ZN 3.4.11.- GO:0002250 ... Q6P179 28337326
    98786 5k1v:B (2.897) BS01 ZN 3.4.11.- GO:0002250 ... Q6P179 28337326
    98787 5k1x:A (1.95) BS02 MG 6.1.1.26 GO:0000049 ... Q8PWY1 27711380
    98788 5k21:A (1.8) BS02 CA ? GO:0016853 ... K0V2D8 27940577
    98789 5k21:B (1.8) BS02 CA ? GO:0016853 ... K0V2D8 27940577
    98790 5k21:C (1.8) BS02 CA ? GO:0016853 ... K0V2D8 27940577
    98791 5k2m:A (2.18) BS02 MG ? GO:0003824 ... Q5JFW0 27566549
    98792 5k2m:A (2.18) BS03 MG ? GO:0003824 ... Q5JFW0 27566549
    98793 5k2m:B (2.18) BS02 MG ? GO:0003824 ... Q5JFW0 27566549
    98794 5k2m:B (2.18) BS03 MG ? GO:0003824 ... Q5JFW0 27566549
    98795 5k2m:E (2.18) BS01 ZN ? GO:0046872 ... Q5JFV9 27566549
    98796 5k2m:F (2.18) BS01 ZN ? GO:0046872 ... Q5JFV9 27566549
    98797 5k2m:G (2.18) BS03 MG ? GO:0003824 ... Q5JFW0 27566549
    98798 5k2m:H (2.18) BS02 MG ? GO:0003824 ... Q5JFW0 27566549
    98799 5k2m:H (2.18) BS03 MG ? GO:0003824 ... Q5JFW0 27566549
    98800 5k2m:J (2.18) BS02 MG ? GO:0003824 ... Q5JFW0 27566549

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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